Strain Fitness in Shewanella oneidensis MR-1 around SO0725

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0721 and katG-1 are separated by 667 nucleotideskatG-1 and SO0726 are separated by 303 nucleotides SO0721: SO0721 - conserved hypothetical protein (NCBI ptt file), at 737,575 to 737,826 SO0721 SO0725: katG-1 - catalase/peroxidase HPI (NCBI ptt file), at 738,494 to 740,719 katG-1 SO0726: SO0726 - ABC transporter, ATP-binding protein (NCBI ptt file), at 741,023 to 742,435 SO0726 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -2 -1 0 1 2at 737.517 kb on - strandat 737.617 kb on + strand, within SO0721at 737.617 kb on + strand, within SO0721at 737.642 kb on + strand, within SO0721at 737.650 kb on - strand, within SO0721at 737.685 kb on - strand, within SO0721at 738.411 kb on + strandat 738.427 kb on - strandat 738.481 kb on - strandat 738.532 kb on - strandat 738.572 kb on + strandat 738.583 kb on + strandat 738.671 kb on + strandat 738.679 kb on - strandat 738.683 kb on + strandat 738.814 kb on - strand, within katG-1at 738.824 kb on - strand, within katG-1at 738.881 kb on + strand, within katG-1at 738.981 kb on + strand, within katG-1at 738.981 kb on + strand, within katG-1at 738.997 kb on - strand, within katG-1at 739.078 kb on - strand, within katG-1at 739.111 kb on + strand, within katG-1at 739.149 kb on - strand, within katG-1at 739.157 kb on - strand, within katG-1at 739.160 kb on + strand, within katG-1at 739.201 kb on - strand, within katG-1at 739.205 kb on + strand, within katG-1at 739.214 kb on + strand, within katG-1at 739.222 kb on - strand, within katG-1at 739.238 kb on + strand, within katG-1at 739.298 kb on + strand, within katG-1at 739.350 kb on + strand, within katG-1at 739.358 kb on - strand, within katG-1at 739.385 kb on + strand, within katG-1at 739.385 kb on + strand, within katG-1at 739.385 kb on + strand, within katG-1at 739.393 kb on - strand, within katG-1at 739.393 kb on - strand, within katG-1at 739.393 kb on - strand, within katG-1at 739.393 kb on - strand, within katG-1at 739.409 kb on + strand, within katG-1at 739.508 kb on + strand, within katG-1at 739.509 kb on + strand, within katG-1at 739.509 kb on + strand, within katG-1at 739.608 kb on - strand, within katG-1at 739.666 kb on - strand, within katG-1at 739.717 kb on + strand, within katG-1at 739.903 kb on - strand, within katG-1at 739.933 kb on - strand, within katG-1at 739.992 kb on + strand, within katG-1at 740.025 kb on + strand, within katG-1at 740.058 kb on - strand, within katG-1at 740.085 kb on - strand, within katG-1at 740.144 kb on - strand, within katG-1at 740.204 kb on + strand, within katG-1at 740.254 kb on + strand, within katG-1at 740.262 kb on - strand, within katG-1at 740.269 kb on - strand, within katG-1at 740.289 kb on + strand, within katG-1at 740.385 kb on - strand, within katG-1at 740.450 kb on - strand, within katG-1at 740.542 kb on - strandat 740.576 kb on - strandat 740.601 kb on + strandat 740.609 kb on - strandat 740.645 kb on + strandat 740.653 kb on - strandat 740.660 kb on + strandat 740.668 kb on - strandat 740.733 kb on + strandat 740.792 kb on + strandat 740.870 kb on + strandat 740.893 kb on - strandat 740.910 kb on + strandat 740.955 kb on - strandat 740.964 kb on + strandat 740.969 kb on + strandat 740.977 kb on - strandat 741.055 kb on - strandat 741.140 kb on + strandat 741.149 kb on + strandat 741.172 kb on + strand, within SO0726at 741.210 kb on - strand, within SO0726at 741.218 kb on + strand, within SO0726at 741.226 kb on - strand, within SO0726at 741.319 kb on + strand, within SO0726at 741.364 kb on + strand, within SO0726at 741.397 kb on + strand, within SO0726at 741.397 kb on + strand, within SO0726at 741.405 kb on - strand, within SO0726at 741.409 kb on + strand, within SO0726at 741.409 kb on + strand, within SO0726at 741.415 kb on - strand, within SO0726at 741.417 kb on - strand, within SO0726at 741.417 kb on - strand, within SO0726at 741.470 kb on - strand, within SO0726at 741.532 kb on + strand, within SO0726at 741.540 kb on - strand, within SO0726at 741.540 kb on - strand, within SO0726at 741.540 kb on - strand, within SO0726at 741.540 kb on - strand, within SO0726at 741.540 kb on - strand, within SO0726at 741.555 kb on - strand, within SO0726at 741.555 kb on - strand, within SO0726at 741.558 kb on + strand, within SO0726at 741.561 kb on + strand, within SO0726at 741.577 kb on - strand, within SO0726at 741.621 kb on - strand, within SO0726at 741.638 kb on + strand, within SO0726at 741.646 kb on - strand, within SO0726at 741.673 kb on + strand, within SO0726at 741.688 kb on + strand, within SO0726at 741.695 kb on + strand, within SO0726at 741.701 kb on + strand, within SO0726

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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737,517 - +0.0
737,617 + SO0721 0.17 +1.2
737,617 + SO0721 0.17 +0.2
737,642 + SO0721 0.27 +0.6
737,650 - SO0721 0.30 -0.3
737,685 - SO0721 0.44 +0.2
738,411 + +0.4
738,427 - -0.3
738,481 - +0.1
738,532 - +2.0
738,572 + +1.0
738,583 + +0.2
738,671 + -0.1
738,679 - +0.1
738,683 + -0.1
738,814 - katG-1 SO0725 0.14 -0.1
738,824 - katG-1 SO0725 0.15 +0.2
738,881 + katG-1 SO0725 0.17 -0.0
738,981 + katG-1 SO0725 0.22 +0.7
738,981 + katG-1 SO0725 0.22 +0.4
738,997 - katG-1 SO0725 0.23 -0.1
739,078 - katG-1 SO0725 0.26 +0.1
739,111 + katG-1 SO0725 0.28 +0.6
739,149 - katG-1 SO0725 0.29 -2.4
739,157 - katG-1 SO0725 0.30 +0.1
739,160 + katG-1 SO0725 0.30 +0.2
739,201 - katG-1 SO0725 0.32 -1.3
739,205 + katG-1 SO0725 0.32 +0.5
739,214 + katG-1 SO0725 0.32 -0.8
739,222 - katG-1 SO0725 0.33 +0.4
739,238 + katG-1 SO0725 0.33 -0.1
739,298 + katG-1 SO0725 0.36 +1.0
739,350 + katG-1 SO0725 0.38 -0.1
739,358 - katG-1 SO0725 0.39 +0.9
739,385 + katG-1 SO0725 0.40 +0.5
739,385 + katG-1 SO0725 0.40 -0.2
739,385 + katG-1 SO0725 0.40 -0.2
739,393 - katG-1 SO0725 0.40 +0.7
739,393 - katG-1 SO0725 0.40 +0.5
739,393 - katG-1 SO0725 0.40 +0.2
739,393 - katG-1 SO0725 0.40 +0.4
739,409 + katG-1 SO0725 0.41 +1.2
739,508 + katG-1 SO0725 0.46 +0.1
739,509 + katG-1 SO0725 0.46 +0.4
739,509 + katG-1 SO0725 0.46 -1.3
739,608 - katG-1 SO0725 0.50 +0.3
739,666 - katG-1 SO0725 0.53 -0.6
739,717 + katG-1 SO0725 0.55 +0.3
739,903 - katG-1 SO0725 0.63 -0.5
739,933 - katG-1 SO0725 0.65 +0.6
739,992 + katG-1 SO0725 0.67 -0.5
740,025 + katG-1 SO0725 0.69 +0.2
740,058 - katG-1 SO0725 0.70 -0.2
740,085 - katG-1 SO0725 0.71 +0.3
740,144 - katG-1 SO0725 0.74 +0.3
740,204 + katG-1 SO0725 0.77 -1.6
740,254 + katG-1 SO0725 0.79 -0.2
740,262 - katG-1 SO0725 0.79 +0.1
740,269 - katG-1 SO0725 0.80 -0.1
740,289 + katG-1 SO0725 0.81 +0.4
740,385 - katG-1 SO0725 0.85 +0.8
740,450 - katG-1 SO0725 0.88 +0.5
740,542 - +1.0
740,576 - +0.2
740,601 + -0.2
740,609 - +0.9
740,645 + +0.3
740,653 - -0.4
740,660 + +0.2
740,668 - +0.5
740,733 + +0.8
740,792 + -1.0
740,870 + +0.3
740,893 - +1.1
740,910 + +0.5
740,955 - +0.1
740,964 + +0.5
740,969 + +0.0
740,977 - +0.8
741,055 - +0.6
741,140 + +0.4
741,149 + +0.4
741,172 + SO0726 0.11 -0.5
741,210 - SO0726 0.13 +0.3
741,218 + SO0726 0.14 +0.1
741,226 - SO0726 0.14 -0.7
741,319 + SO0726 0.21 -0.3
741,364 + SO0726 0.24 +0.4
741,397 + SO0726 0.26 -0.2
741,397 + SO0726 0.26 -0.7
741,405 - SO0726 0.27 -0.2
741,409 + SO0726 0.27 -0.3
741,409 + SO0726 0.27 +0.2
741,415 - SO0726 0.28 -0.3
741,417 - SO0726 0.28 +1.1
741,417 - SO0726 0.28 +0.5
741,470 - SO0726 0.32 +0.7
741,532 + SO0726 0.36 +0.7
741,540 - SO0726 0.37 +0.5
741,540 - SO0726 0.37 -0.3
741,540 - SO0726 0.37 +0.4
741,540 - SO0726 0.37 -0.1
741,540 - SO0726 0.37 -0.2
741,555 - SO0726 0.38 -0.3
741,555 - SO0726 0.38 -0.9
741,558 + SO0726 0.38 -1.2
741,561 + SO0726 0.38 +0.1
741,577 - SO0726 0.39 +0.0
741,621 - SO0726 0.42 +1.0
741,638 + SO0726 0.44 -0.6
741,646 - SO0726 0.44 +0.2
741,673 + SO0726 0.46 +0.4
741,688 + SO0726 0.47 +0.2
741,695 + SO0726 0.48 -0.2
741,701 + SO0726 0.48 -0.3

Or see this region's nucleotide sequence