Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0584 and SO0585 are separated by 84 nucleotides SO0585 and SO0586 are separated by 89 nucleotides SO0586 and SO0587 are separated by 27 nucleotides
SO0584: SO0584 - methyl-accepting chemotaxis protein (NCBI ptt file), at 609,335 to 610,909
SO0584
SO0585: SO0585 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (NCBI ptt file), at 610,994 to 611,929
SO0585
SO0586: SO0586 - conserved hypothetical protein (NCBI ptt file), at 612,019 to 612,354
SO0586
SO0587: SO0587 - glycerophosphoryl diester phosphodiesterase, putative (NCBI ptt file), at 612,382 to 613,104
SO0587
Position (kb) 610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 610.052 kb on + strand, within SO0584 at 610.052 kb on + strand, within SO0584 at 610.052 kb on + strand, within SO0584 at 610.134 kb on + strand, within SO0584 at 610.223 kb on - strand, within SO0584 at 610.327 kb on - strand, within SO0584 at 610.535 kb on - strand, within SO0584 at 610.582 kb on + strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.612 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.664 kb on - strand, within SO0584 at 610.860 kb on + strand at 610.876 kb on - strand at 610.896 kb on + strand at 611.000 kb on + strand at 611.179 kb on + strand, within SO0585 at 611.187 kb on - strand, within SO0585 at 611.280 kb on + strand, within SO0585 at 611.280 kb on + strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.296 kb on + strand, within SO0585 at 611.304 kb on - strand, within SO0585 at 611.364 kb on - strand, within SO0585 at 611.366 kb on + strand, within SO0585 at 611.374 kb on - strand, within SO0585 at 611.380 kb on - strand, within SO0585 at 611.412 kb on - strand, within SO0585 at 611.430 kb on + strand, within SO0585 at 611.434 kb on + strand, within SO0585 at 611.560 kb on - strand, within SO0585 at 611.698 kb on + strand, within SO0585 at 611.765 kb on + strand, within SO0585 at 611.773 kb on - strand, within SO0585 at 611.793 kb on - strand, within SO0585 at 611.853 kb on - strand at 612.002 kb on + strand at 612.010 kb on - strand at 612.010 kb on - strand at 612.069 kb on + strand, within SO0586 at 612.069 kb on + strand, within SO0586 at 612.077 kb on - strand, within SO0586 at 612.084 kb on - strand, within SO0586 at 612.237 kb on + strand, within SO0586 at 612.348 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.349 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.354 kb on + strand at 612.357 kb on - strand at 612.357 kb on - strand at 612.361 kb on + strand at 612.362 kb on - strand at 612.362 kb on - strand at 612.454 kb on - strand at 612.478 kb on - strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.480 kb on + strand, within SO0587 at 612.488 kb on - strand, within SO0587 at 612.505 kb on + strand, within SO0587 at 612.528 kb on + strand, within SO0587 at 612.529 kb on - strand, within SO0587 at 612.564 kb on - strand, within SO0587 at 612.773 kb on + strand, within SO0587 at 612.843 kb on + strand, within SO0587 at 612.850 kb on - strand, within SO0587
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 610,052 + SO0584 0.46 +0.2 610,052 + SO0584 0.46 +0.2 610,052 + SO0584 0.46 +0.7 610,134 + SO0584 0.51 +0.4 610,223 - SO0584 0.56 +0.7 610,327 - SO0584 0.63 -1.8 610,535 - SO0584 0.76 +0.4 610,582 + SO0584 0.79 +0.1 610,590 - SO0584 0.80 -0.4 610,590 - SO0584 0.80 +0.2 610,590 - SO0584 0.80 -0.3 610,612 + SO0584 0.81 -0.0 610,656 + SO0584 0.84 -0.3 610,656 + SO0584 0.84 +0.3 610,656 + SO0584 0.84 +0.5 610,664 - SO0584 0.84 -0.7 610,860 + -1.3 610,876 - +0.1 610,896 + +1.1 611,000 + -0.1 611,179 + SO0585 0.20 +0.3 611,187 - SO0585 0.21 +0.3 611,280 + SO0585 0.31 +0.8 611,280 + SO0585 0.31 -0.3 611,288 - SO0585 0.31 +0.0 611,288 - SO0585 0.31 +0.7 611,288 - SO0585 0.31 +0.1 611,296 + SO0585 0.32 -0.2 611,304 - SO0585 0.33 -1.5 611,364 - SO0585 0.40 -0.2 611,366 + SO0585 0.40 +0.4 611,374 - SO0585 0.41 +0.2 611,380 - SO0585 0.41 -1.0 611,412 - SO0585 0.45 -0.5 611,430 + SO0585 0.47 -0.7 611,434 + SO0585 0.47 +0.1 611,560 - SO0585 0.60 +0.6 611,698 + SO0585 0.75 +0.1 611,765 + SO0585 0.82 +0.3 611,773 - SO0585 0.83 -0.1 611,793 - SO0585 0.85 -3.1 611,853 - -0.1 612,002 + +0.5 612,010 - +0.9 612,010 - -0.0 612,069 + SO0586 0.15 -1.6 612,069 + SO0586 0.15 -0.6 612,077 - SO0586 0.17 -0.2 612,084 - SO0586 0.19 +0.6 612,237 + SO0586 0.65 +0.2 612,348 + -0.0 612,349 + +0.1 612,349 + -0.1 612,349 + -1.0 612,349 + +0.5 612,349 + +0.2 612,349 + -0.8 612,349 + +0.6 612,354 + +1.0 612,354 + +1.0 612,354 + +0.2 612,357 - -0.1 612,357 - -0.2 612,361 + +0.4 612,362 - +0.7 612,362 - -0.1 612,454 - -0.5 612,478 - SO0587 0.13 +0.3 612,480 + SO0587 0.14 +0.6 612,480 + SO0587 0.14 +0.6 612,480 + SO0587 0.14 -0.0 612,480 + SO0587 0.14 +0.6 612,488 - SO0587 0.15 +1.2 612,505 + SO0587 0.17 -0.1 612,528 + SO0587 0.20 +0.4 612,529 - SO0587 0.20 -0.0 612,564 - SO0587 0.25 -0.1 612,773 + SO0587 0.54 -0.3 612,843 + SO0587 0.64 -0.8 612,850 - SO0587 0.65 +0.3
Or see this region's nucleotide sequence