Strain Fitness in Shewanella oneidensis MR-1 around SO0098

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthutU and hutH are separated by 64 nucleotideshutH and fdnG are separated by 625 nucleotides SO0097: hutU - urocanate hydratase (NCBI ptt file), at 104,801 to 106,471 hutU SO0098: hutH - histidine ammonia-lyase (NCBI ptt file), at 106,536 to 108,077 hutH SO0101: fdnG - selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit (NCBI ptt file), at 108,703 to 111,717 fdnG Position (kb) 106 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 105.567 kb on + strand, within hutUat 105.567 kb on + strand, within hutUat 105.575 kb on - strand, within hutUat 105.592 kb on - strand, within hutUat 105.592 kb on - strand, within hutUat 105.599 kb on - strand, within hutUat 105.628 kb on + strand, within hutUat 105.628 kb on + strand, within hutUat 105.628 kb on + strand, within hutUat 105.636 kb on - strand, within hutUat 105.637 kb on - strand, within hutUat 105.724 kb on - strand, within hutUat 105.839 kb on + strand, within hutUat 105.839 kb on + strand, within hutUat 105.839 kb on + strand, within hutUat 105.847 kb on - strand, within hutUat 105.847 kb on - strand, within hutUat 105.957 kb on + strand, within hutUat 105.962 kb on + strand, within hutUat 105.965 kb on - strand, within hutUat 105.965 kb on - strand, within hutUat 105.980 kb on + strand, within hutUat 106.011 kb on + strand, within hutUat 106.046 kb on - strand, within hutUat 106.061 kb on + strand, within hutUat 106.061 kb on + strand, within hutUat 106.061 kb on + strand, within hutUat 106.061 kb on + strand, within hutUat 106.069 kb on - strand, within hutUat 106.161 kb on - strand, within hutUat 106.161 kb on - strand, within hutUat 106.183 kb on - strand, within hutUat 106.193 kb on - strand, within hutUat 106.223 kb on + strand, within hutUat 106.231 kb on - strand, within hutUat 106.231 kb on - strand, within hutUat 106.233 kb on - strand, within hutUat 106.264 kb on - strand, within hutUat 106.264 kb on - strand, within hutUat 106.382 kb on + strandat 106.436 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.443 kb on + strandat 106.451 kb on - strandat 106.451 kb on - strandat 106.451 kb on - strandat 106.451 kb on - strandat 106.573 kb on + strandat 106.581 kb on - strandat 106.618 kb on + strandat 106.630 kb on + strandat 106.741 kb on - strand, within hutHat 106.747 kb on - strand, within hutHat 106.785 kb on - strand, within hutHat 106.899 kb on - strand, within hutHat 106.922 kb on + strand, within hutHat 106.934 kb on + strand, within hutHat 106.934 kb on + strand, within hutHat 106.942 kb on - strand, within hutHat 106.942 kb on - strand, within hutHat 106.942 kb on - strand, within hutHat 106.942 kb on - strand, within hutHat 106.995 kb on + strand, within hutHat 107.038 kb on + strand, within hutHat 107.043 kb on + strand, within hutHat 107.046 kb on - strand, within hutHat 107.116 kb on + strand, within hutHat 107.116 kb on + strand, within hutHat 107.116 kb on + strand, within hutHat 107.116 kb on + strand, within hutHat 107.123 kb on - strand, within hutHat 107.124 kb on - strand, within hutHat 107.124 kb on - strand, within hutHat 107.129 kb on - strand, within hutHat 107.134 kb on + strand, within hutHat 107.149 kb on - strand, within hutHat 107.166 kb on + strand, within hutHat 107.174 kb on - strand, within hutHat 107.208 kb on - strand, within hutHat 107.221 kb on + strand, within hutHat 107.307 kb on + strand, within hutHat 107.365 kb on + strand, within hutHat 107.389 kb on - strand, within hutHat 107.389 kb on - strand, within hutHat 107.411 kb on - strand, within hutHat 107.416 kb on - strand, within hutHat 107.416 kb on - strand, within hutHat 107.460 kb on + strand, within hutHat 107.468 kb on - strand, within hutHat 107.606 kb on + strand, within hutHat 107.629 kb on + strand, within hutHat 107.629 kb on + strand, within hutHat 107.629 kb on + strand, within hutHat 107.629 kb on + strand, within hutHat 107.637 kb on - strand, within hutHat 107.637 kb on - strand, within hutHat 107.637 kb on - strand, within hutHat 107.647 kb on - strand, within hutHat 107.723 kb on - strand, within hutHat 107.723 kb on - strand, within hutHat 107.839 kb on - strand, within hutHat 107.889 kb on + strand, within hutHat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.936 kb on + strandat 107.944 kb on - strandat 107.944 kb on - strandat 107.944 kb on - strandat 107.944 kb on - strandat 107.944 kb on - strandat 107.944 kb on - strandat 107.949 kb on - strandat 108.020 kb on + strandat 108.028 kb on - strandat 108.034 kb on + strandat 108.078 kb on + strandat 108.078 kb on + strandat 108.078 kb on + strandat 108.106 kb on - strandat 108.140 kb on + strandat 108.217 kb on + strandat 108.242 kb on + strandat 108.242 kb on + strandat 108.242 kb on + strandat 108.250 kb on + strandat 108.250 kb on - strandat 108.250 kb on - strandat 108.344 kb on - strandat 108.395 kb on + strandat 108.799 kb on - strandat 108.806 kb on + strandat 108.806 kb on + strandat 108.806 kb on + strandat 108.814 kb on - strandat 108.816 kb on + strandat 108.980 kb on + strandat 108.980 kb on + strandat 108.988 kb on - strandat 109.005 kb on + strand, within fdnGat 109.025 kb on + strand, within fdnGat 109.025 kb on + strand, within fdnGat 109.033 kb on - strand, within fdnGat 109.033 kb on - strand, within fdnGat 109.070 kb on + strand, within fdnG

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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105,567 + hutU SO0097 0.46 +0.1
105,567 + hutU SO0097 0.46 +0.3
105,575 - hutU SO0097 0.46 +0.7
105,592 - hutU SO0097 0.47 +0.4
105,592 - hutU SO0097 0.47 +0.2
105,599 - hutU SO0097 0.48 -1.3
105,628 + hutU SO0097 0.49 +2.0
105,628 + hutU SO0097 0.49 +2.1
105,628 + hutU SO0097 0.49 +1.3
105,636 - hutU SO0097 0.50 +0.5
105,637 - hutU SO0097 0.50 +0.7
105,724 - hutU SO0097 0.55 -0.3
105,839 + hutU SO0097 0.62 +0.7
105,839 + hutU SO0097 0.62 +0.8
105,839 + hutU SO0097 0.62 -0.7
105,847 - hutU SO0097 0.63 +1.4
105,847 - hutU SO0097 0.63 +0.7
105,957 + hutU SO0097 0.69 +0.5
105,962 + hutU SO0097 0.69 +0.9
105,965 - hutU SO0097 0.70 -0.4
105,965 - hutU SO0097 0.70 +0.5
105,980 + hutU SO0097 0.71 +0.3
106,011 + hutU SO0097 0.72 -1.5
106,046 - hutU SO0097 0.75 -0.9
106,061 + hutU SO0097 0.75 -0.4
106,061 + hutU SO0097 0.75 -0.3
106,061 + hutU SO0097 0.75 +2.4
106,061 + hutU SO0097 0.75 -0.4
106,069 - hutU SO0097 0.76 +1.2
106,161 - hutU SO0097 0.81 +0.2
106,161 - hutU SO0097 0.81 +1.2
106,183 - hutU SO0097 0.83 +1.9
106,193 - hutU SO0097 0.83 +1.0
106,223 + hutU SO0097 0.85 -0.2
106,231 - hutU SO0097 0.86 +0.8
106,231 - hutU SO0097 0.86 +1.4
106,233 - hutU SO0097 0.86 +0.5
106,264 - hutU SO0097 0.88 +0.5
106,264 - hutU SO0097 0.88 +0.2
106,382 + +0.1
106,436 + -0.6
106,443 + -0.1
106,443 + +2.1
106,443 + +0.2
106,443 + +0.5
106,443 + +0.1
106,443 + -0.6
106,443 + -0.2
106,451 - +0.2
106,451 - +0.5
106,451 - +0.7
106,451 - +0.2
106,573 + +0.7
106,581 - +0.5
106,618 + +1.3
106,630 + -0.3
106,741 - hutH SO0098 0.13 +0.7
106,747 - hutH SO0098 0.14 +0.8
106,785 - hutH SO0098 0.16 +0.9
106,899 - hutH SO0098 0.24 -0.6
106,922 + hutH SO0098 0.25 -0.1
106,934 + hutH SO0098 0.26 +0.7
106,934 + hutH SO0098 0.26 -0.4
106,942 - hutH SO0098 0.26 -0.8
106,942 - hutH SO0098 0.26 -0.0
106,942 - hutH SO0098 0.26 +0.4
106,942 - hutH SO0098 0.26 +1.1
106,995 + hutH SO0098 0.30 +1.5
107,038 + hutH SO0098 0.33 -0.1
107,043 + hutH SO0098 0.33 +0.6
107,046 - hutH SO0098 0.33 +0.6
107,116 + hutH SO0098 0.38 +1.7
107,116 + hutH SO0098 0.38 +0.1
107,116 + hutH SO0098 0.38 +0.2
107,116 + hutH SO0098 0.38 -2.6
107,123 - hutH SO0098 0.38 +0.6
107,124 - hutH SO0098 0.38 +0.3
107,124 - hutH SO0098 0.38 +1.3
107,129 - hutH SO0098 0.38 +0.6
107,134 + hutH SO0098 0.39 +0.7
107,149 - hutH SO0098 0.40 +0.2
107,166 + hutH SO0098 0.41 +0.3
107,174 - hutH SO0098 0.41 +0.9
107,208 - hutH SO0098 0.44 +0.6
107,221 + hutH SO0098 0.44 +0.2
107,307 + hutH SO0098 0.50 +1.0
107,365 + hutH SO0098 0.54 +0.8
107,389 - hutH SO0098 0.55 +1.6
107,389 - hutH SO0098 0.55 +1.4
107,411 - hutH SO0098 0.57 +0.1
107,416 - hutH SO0098 0.57 +1.1
107,416 - hutH SO0098 0.57 +0.2
107,460 + hutH SO0098 0.60 +0.7
107,468 - hutH SO0098 0.60 +0.6
107,606 + hutH SO0098 0.69 +1.2
107,629 + hutH SO0098 0.71 +0.6
107,629 + hutH SO0098 0.71 +1.1
107,629 + hutH SO0098 0.71 +0.5
107,629 + hutH SO0098 0.71 +0.6
107,637 - hutH SO0098 0.71 +0.8
107,637 - hutH SO0098 0.71 -1.4
107,637 - hutH SO0098 0.71 +0.5
107,647 - hutH SO0098 0.72 +0.2
107,723 - hutH SO0098 0.77 -0.1
107,723 - hutH SO0098 0.77 -2.1
107,839 - hutH SO0098 0.85 +0.1
107,889 + hutH SO0098 0.88 +0.4
107,936 + +0.3
107,936 + +0.3
107,936 + +0.6
107,936 + +0.5
107,936 + +0.5
107,936 + +1.2
107,936 + +0.3
107,936 + +1.0
107,936 + +0.5
107,936 + +0.2
107,936 + +0.4
107,936 + +1.5
107,936 + +0.7
107,944 - +1.3
107,944 - +1.4
107,944 - +0.9
107,944 - +0.8
107,944 - +0.6
107,944 - +0.4
107,949 - +1.0
108,020 + -0.1
108,028 - +0.4
108,034 + +0.5
108,078 + +0.8
108,078 + +0.1
108,078 + +0.6
108,106 - +0.2
108,140 + +0.7
108,217 + +0.1
108,242 + +0.2
108,242 + +1.1
108,242 + -0.5
108,250 + -0.3
108,250 - -0.2
108,250 - +0.8
108,344 - -0.3
108,395 + +1.2
108,799 - -0.3
108,806 + -0.2
108,806 + -1.7
108,806 + +0.4
108,814 - -0.3
108,816 + -1.0
108,980 + +0.4
108,980 + -0.6
108,988 - +0.6
109,005 + fdnG SO0101 0.10 -0.2
109,025 + fdnG SO0101 0.11 +0.2
109,025 + fdnG SO0101 0.11 +0.1
109,033 - fdnG SO0101 0.11 -0.2
109,033 - fdnG SO0101 0.11 -0.3
109,070 + fdnG SO0101 0.12 -0.3

Or see this region's nucleotide sequence