Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0961

Experiment: Nalidixic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0958 and Psest_0959 overlap by 8 nucleotidesPsest_0959 and Psest_0960 are separated by 40 nucleotidesPsest_0960 and Psest_0961 are separated by 95 nucleotidesPsest_0961 and Psest_0962 are separated by 58 nucleotides Psest_0958: Psest_0958 - Oligoketide cyclase/lipid transport protein, at 1,039,953 to 1,040,387 _0958 Psest_0959: Psest_0959 - Uncharacterized protein conserved in bacteria, at 1,040,380 to 1,040,694 _0959 Psest_0960: Psest_0960 - Small protein A (tmRNA-binding), at 1,040,735 to 1,041,250 _0960 Psest_0961: Psest_0961 - Fe2+/Zn2+ uptake regulation proteins, at 1,041,346 to 1,041,750 _0961 Psest_0962: Psest_0962 - DNA repair protein RecN, at 1,041,809 to 1,043,482 _0962 Position (kb) 1041 1042Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1040.379 kb on + strandat 1040.379 kb on + strandat 1040.379 kb on + strandat 1040.380 kb on - strandat 1040.413 kb on + strand, within Psest_0959at 1040.413 kb on + strand, within Psest_0959at 1040.467 kb on - strand, within Psest_0959at 1040.561 kb on + strand, within Psest_0959at 1040.611 kb on + strand, within Psest_0959at 1040.612 kb on - strand, within Psest_0959at 1042.004 kb on + strand, within Psest_0962at 1042.022 kb on + strand, within Psest_0962at 1042.022 kb on + strand, within Psest_0962at 1042.023 kb on - strand, within Psest_0962at 1042.023 kb on - strand, within Psest_0962at 1042.023 kb on - strand, within Psest_0962at 1042.109 kb on + strand, within Psest_0962at 1042.110 kb on - strand, within Psest_0962at 1042.110 kb on - strand, within Psest_0962at 1042.173 kb on - strand, within Psest_0962at 1042.173 kb on - strand, within Psest_0962at 1042.260 kb on + strand, within Psest_0962at 1042.426 kb on - strand, within Psest_0962at 1042.426 kb on - strand, within Psest_0962at 1042.517 kb on + strand, within Psest_0962at 1042.517 kb on + strand, within Psest_0962at 1042.518 kb on - strand, within Psest_0962at 1042.518 kb on - strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.557 kb on + strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962at 1042.558 kb on - strand, within Psest_0962

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.001 mg/ml
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1,040,379 + -0.2
1,040,379 + +0.9
1,040,379 + +0.0
1,040,380 - -0.2
1,040,413 + Psest_0959 0.10 -0.4
1,040,413 + Psest_0959 0.10 +1.1
1,040,467 - Psest_0959 0.28 -0.4
1,040,561 + Psest_0959 0.57 +1.1
1,040,611 + Psest_0959 0.73 +1.5
1,040,612 - Psest_0959 0.74 +0.5
1,042,004 + Psest_0962 0.12 -1.2
1,042,022 + Psest_0962 0.13 -0.3
1,042,022 + Psest_0962 0.13 -0.7
1,042,023 - Psest_0962 0.13 -1.9
1,042,023 - Psest_0962 0.13 -0.4
1,042,023 - Psest_0962 0.13 -2.1
1,042,109 + Psest_0962 0.18 -1.7
1,042,110 - Psest_0962 0.18 -1.2
1,042,110 - Psest_0962 0.18 -2.6
1,042,173 - Psest_0962 0.22 -2.1
1,042,173 - Psest_0962 0.22 -0.9
1,042,260 + Psest_0962 0.27 -4.5
1,042,426 - Psest_0962 0.37 -2.1
1,042,426 - Psest_0962 0.37 -1.9
1,042,517 + Psest_0962 0.42 -3.5
1,042,517 + Psest_0962 0.42 -1.4
1,042,518 - Psest_0962 0.42 -1.8
1,042,518 - Psest_0962 0.42 -1.0
1,042,557 + Psest_0962 0.45 -1.2
1,042,557 + Psest_0962 0.45 -0.7
1,042,557 + Psest_0962 0.45 -1.2
1,042,557 + Psest_0962 0.45 -2.2
1,042,557 + Psest_0962 0.45 -1.8
1,042,557 + Psest_0962 0.45 -3.6
1,042,557 + Psest_0962 0.45 -3.3
1,042,557 + Psest_0962 0.45 -3.1
1,042,557 + Psest_0962 0.45 -2.4
1,042,557 + Psest_0962 0.45 -1.4
1,042,557 + Psest_0962 0.45 -2.0
1,042,558 - Psest_0962 0.45 -1.7
1,042,558 - Psest_0962 0.45 -1.6
1,042,558 - Psest_0962 0.45 -1.6
1,042,558 - Psest_0962 0.45 -1.3
1,042,558 - Psest_0962 0.45 -2.2
1,042,558 - Psest_0962 0.45 -1.9
1,042,558 - Psest_0962 0.45 -0.3

Or see this region's nucleotide sequence