Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0751

Experiment: Nalidixic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0749 and Psest_0750 are separated by 108 nucleotidesPsest_0750 and Psest_0751 are separated by 22 nucleotidesPsest_0751 and Psest_0752 are separated by 99 nucleotides Psest_0749: Psest_0749 - Transcriptional regulator, at 820,936 to 821,646 _0749 Psest_0750: Psest_0750 - hypothetical protein, at 821,755 to 822,129 _0750 Psest_0751: Psest_0751 - Arabinose efflux permease, at 822,152 to 823,333 _0751 Psest_0752: Psest_0752 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 823,433 to 824,422 _0752 Position (kb) 822 823 824Strain fitness (log2 ratio) -1 0 1 2at 821.176 kb on + strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.204 kb on - strand, within Psest_0749at 821.296 kb on + strand, within Psest_0749at 821.525 kb on - strand, within Psest_0749at 821.700 kb on - strandat 821.755 kb on - strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.785 kb on - strandat 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.833 kb on + strand, within Psest_0750at 821.833 kb on + strand, within Psest_0750at 822.407 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.982 kb on - strand, within Psest_0751at 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.325 kb on + strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.326 kb on - strandat 823.449 kb on + strandat 823.449 kb on + strandat 823.449 kb on + strandat 823.449 kb on + strandat 823.449 kb on + strandat 823.602 kb on + strand, within Psest_0752at 823.602 kb on + strand, within Psest_0752at 823.602 kb on + strand, within Psest_0752at 823.603 kb on - strand, within Psest_0752at 823.603 kb on - strand, within Psest_0752at 823.603 kb on - strand, within Psest_0752at 823.664 kb on - strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.990 kb on - strand, within Psest_0752at 824.296 kb on - strand, within Psest_0752at 824.296 kb on - strand, within Psest_0752

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.001 mg/ml
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821,176 + Psest_0749 0.34 +0.3
821,177 - Psest_0749 0.34 +1.5
821,177 - Psest_0749 0.34 +2.2
821,177 - Psest_0749 0.34 +0.3
821,180 - Psest_0749 0.34 +1.2
821,180 - Psest_0749 0.34 +0.7
821,180 - Psest_0749 0.34 +1.0
821,180 - Psest_0749 0.34 -0.2
821,180 - Psest_0749 0.34 +1.7
821,203 + Psest_0749 0.38 +0.7
821,203 + Psest_0749 0.38 -1.5
821,203 + Psest_0749 0.38 +0.4
821,203 + Psest_0749 0.38 +1.4
821,204 - Psest_0749 0.38 +2.1
821,296 + Psest_0749 0.51 +0.7
821,525 - Psest_0749 0.83 +0.1
821,700 - +0.6
821,755 - +0.8
821,784 + +2.0
821,784 + +2.7
821,784 + +0.8
821,784 + +1.1
821,785 - +0.2
821,812 + Psest_0750 0.15 +0.7
821,812 + Psest_0750 0.15 -0.9
821,812 + Psest_0750 0.15 +0.7
821,812 + Psest_0750 0.15 -0.8
821,812 + Psest_0750 0.15 +0.7
821,813 - Psest_0750 0.15 +0.8
821,813 - Psest_0750 0.15 +0.1
821,813 - Psest_0750 0.15 +1.4
821,813 - Psest_0750 0.15 +0.5
821,813 - Psest_0750 0.15 -0.9
821,833 + Psest_0750 0.21 +0.1
821,833 + Psest_0750 0.21 +0.0
822,407 + Psest_0751 0.22 +2.0
822,828 + Psest_0751 0.57 -0.9
822,828 + Psest_0751 0.57 +0.1
822,828 + Psest_0751 0.57 -0.1
822,828 + Psest_0751 0.57 -0.7
822,828 + Psest_0751 0.57 +1.9
822,828 + Psest_0751 0.57 +0.7
822,828 + Psest_0751 0.57 +1.2
822,828 + Psest_0751 0.57 +0.7
822,829 - Psest_0751 0.57 +1.2
822,829 - Psest_0751 0.57 +0.7
822,829 - Psest_0751 0.57 +0.7
822,829 - Psest_0751 0.57 -0.2
822,981 + Psest_0751 0.70 +0.1
822,981 + Psest_0751 0.70 +1.1
822,981 + Psest_0751 0.70 -0.9
822,981 + Psest_0751 0.70 +0.7
822,981 + Psest_0751 0.70 +0.7
822,981 + Psest_0751 0.70 +1.6
822,981 + Psest_0751 0.70 +1.2
822,982 - Psest_0751 0.70 +0.8
823,325 + +0.7
823,325 + +2.2
823,325 + +0.7
823,325 + +2.2
823,325 + +2.0
823,325 + +1.1
823,325 + -0.3
823,325 + +0.5
823,325 + -0.2
823,325 + +1.0
823,325 + +0.3
823,325 + +1.5
823,325 + +0.7
823,325 + +0.7
823,325 + +0.7
823,326 - -0.3
823,326 - +0.1
823,326 - +2.7
823,326 - +2.2
823,326 - +0.2
823,326 - +0.2
823,326 - +1.7
823,326 - +0.7
823,326 - -1.7
823,449 + -1.5
823,449 + +0.7
823,449 + -0.9
823,449 + +1.2
823,449 + -0.0
823,602 + Psest_0752 0.17 +0.3
823,602 + Psest_0752 0.17 -1.2
823,602 + Psest_0752 0.17 -0.4
823,603 - Psest_0752 0.17 -0.7
823,603 - Psest_0752 0.17 +0.2
823,603 - Psest_0752 0.17 +1.1
823,664 - Psest_0752 0.23 -0.3
823,950 + Psest_0752 0.52 +0.1
823,950 + Psest_0752 0.52 +0.4
823,950 + Psest_0752 0.52 -0.7
823,950 + Psest_0752 0.52 -0.3
823,950 + Psest_0752 0.52 +1.1
823,950 + Psest_0752 0.52 -0.5
823,951 - Psest_0752 0.52 -0.2
823,951 - Psest_0752 0.52 -0.8
823,951 - Psest_0752 0.52 +1.2
823,951 - Psest_0752 0.52 -0.1
823,951 - Psest_0752 0.52 -0.3
823,990 - Psest_0752 0.56 +0.4
824,296 - Psest_0752 0.87 +0.2
824,296 - Psest_0752 0.87 +1.5

Or see this region's nucleotide sequence