Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3082 and Sama_3083 are separated by 43 nucleotides Sama_3083 and Sama_3084 overlap by 1 nucleotides Sama_3084 and Sama_3085 overlap by 4 nucleotides
Sama_3082: Sama_3082 - K+-dependent Na+/Ca+ exchanger related-protein (RefSeq), at 3,659,041 to 3,660,003
_3082
Sama_3083: Sama_3083 - arabinose-5-phosphate isomerase (RefSeq), at 3,660,047 to 3,661,024
_3083
Sama_3084: Sama_3084 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 3,661,024 to 3,661,572
_3084
Sama_3085: Sama_3085 - hypothetical protein (RefSeq), at 3,661,569 to 3,662,126
_3085
Position (kb)
3660
3661
3662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3659.312 kb on + strand, within Sama_3082 at 3659.389 kb on + strand, within Sama_3082 at 3659.436 kb on + strand, within Sama_3082 at 3659.436 kb on + strand, within Sama_3082 at 3659.464 kb on + strand, within Sama_3082 at 3659.464 kb on + strand, within Sama_3082 at 3659.464 kb on + strand, within Sama_3082 at 3659.464 kb on + strand, within Sama_3082 at 3659.464 kb on + strand, within Sama_3082 at 3659.547 kb on + strand, within Sama_3082 at 3659.547 kb on + strand, within Sama_3082 at 3659.585 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.641 kb on + strand, within Sama_3082 at 3659.664 kb on + strand, within Sama_3082 at 3659.679 kb on + strand, within Sama_3082 at 3659.679 kb on + strand, within Sama_3082 at 3659.756 kb on + strand, within Sama_3082 at 3659.763 kb on + strand, within Sama_3082 at 3659.784 kb on + strand, within Sama_3082 at 3659.784 kb on + strand, within Sama_3082 at 3659.784 kb on + strand, within Sama_3082 at 3659.784 kb on + strand, within Sama_3082 at 3659.784 kb on + strand, within Sama_3082 at 3659.863 kb on + strand, within Sama_3082 at 3659.863 kb on + strand, within Sama_3082 at 3659.863 kb on + strand, within Sama_3082 at 3659.863 kb on + strand, within Sama_3082 at 3659.863 kb on + strand, within Sama_3082 at 3659.870 kb on + strand, within Sama_3082 at 3659.870 kb on + strand, within Sama_3082 at 3659.963 kb on + strand at 3659.963 kb on + strand at 3660.020 kb on + strand at 3660.020 kb on + strand at 3660.700 kb on + strand, within Sama_3083 at 3660.700 kb on + strand, within Sama_3083 at 3661.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 3,659,312 + Sama_3082 0.28 +1.1 3,659,389 + Sama_3082 0.36 -2.5 3,659,436 + Sama_3082 0.41 +1.5 3,659,436 + Sama_3082 0.41 +1.0 3,659,464 + Sama_3082 0.44 -0.7 3,659,464 + Sama_3082 0.44 -1.5 3,659,464 + Sama_3082 0.44 -0.7 3,659,464 + Sama_3082 0.44 +0.1 3,659,464 + Sama_3082 0.44 -0.1 3,659,547 + Sama_3082 0.53 -1.3 3,659,547 + Sama_3082 0.53 -0.8 3,659,585 + Sama_3082 0.56 +0.2 3,659,641 + Sama_3082 0.62 -0.1 3,659,641 + Sama_3082 0.62 -2.6 3,659,641 + Sama_3082 0.62 -0.3 3,659,641 + Sama_3082 0.62 +1.0 3,659,641 + Sama_3082 0.62 +0.1 3,659,641 + Sama_3082 0.62 -2.5 3,659,641 + Sama_3082 0.62 +0.1 3,659,664 + Sama_3082 0.65 +0.0 3,659,679 + Sama_3082 0.66 -1.5 3,659,679 + Sama_3082 0.66 -1.0 3,659,756 + Sama_3082 0.74 -0.5 3,659,763 + Sama_3082 0.75 -1.8 3,659,784 + Sama_3082 0.77 -1.1 3,659,784 + Sama_3082 0.77 +0.3 3,659,784 + Sama_3082 0.77 +0.8 3,659,784 + Sama_3082 0.77 -0.4 3,659,784 + Sama_3082 0.77 -1.1 3,659,863 + Sama_3082 0.85 -1.3 3,659,863 + Sama_3082 0.85 -0.1 3,659,863 + Sama_3082 0.85 -1.2 3,659,863 + Sama_3082 0.85 -0.0 3,659,863 + Sama_3082 0.85 +1.8 3,659,870 + Sama_3082 0.86 -0.2 3,659,870 + Sama_3082 0.86 -0.1 3,659,963 + +0.0 3,659,963 + -1.6 3,660,020 + +0.4 3,660,020 + -1.8 3,660,700 + Sama_3083 0.67 +0.5 3,660,700 + Sama_3083 0.67 +1.6 3,661,006 + -0.2
Or see this region's nucleotide sequence