Strain Fitness in Shewanella amazonensis SB2B around Sama_3083

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3082 and Sama_3083 are separated by 43 nucleotidesSama_3083 and Sama_3084 overlap by 1 nucleotidesSama_3084 and Sama_3085 overlap by 4 nucleotides Sama_3082: Sama_3082 - K+-dependent Na+/Ca+ exchanger related-protein (RefSeq), at 3,659,041 to 3,660,003 _3082 Sama_3083: Sama_3083 - arabinose-5-phosphate isomerase (RefSeq), at 3,660,047 to 3,661,024 _3083 Sama_3084: Sama_3084 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 3,661,024 to 3,661,572 _3084 Sama_3085: Sama_3085 - hypothetical protein (RefSeq), at 3,661,569 to 3,662,126 _3085 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -2 -1 0 1 2at 3659.312 kb on + strand, within Sama_3082at 3659.389 kb on + strand, within Sama_3082at 3659.436 kb on + strand, within Sama_3082at 3659.436 kb on + strand, within Sama_3082at 3659.464 kb on + strand, within Sama_3082at 3659.464 kb on + strand, within Sama_3082at 3659.464 kb on + strand, within Sama_3082at 3659.464 kb on + strand, within Sama_3082at 3659.464 kb on + strand, within Sama_3082at 3659.547 kb on + strand, within Sama_3082at 3659.547 kb on + strand, within Sama_3082at 3659.585 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.641 kb on + strand, within Sama_3082at 3659.664 kb on + strand, within Sama_3082at 3659.679 kb on + strand, within Sama_3082at 3659.679 kb on + strand, within Sama_3082at 3659.756 kb on + strand, within Sama_3082at 3659.763 kb on + strand, within Sama_3082at 3659.784 kb on + strand, within Sama_3082at 3659.784 kb on + strand, within Sama_3082at 3659.784 kb on + strand, within Sama_3082at 3659.784 kb on + strand, within Sama_3082at 3659.784 kb on + strand, within Sama_3082at 3659.863 kb on + strand, within Sama_3082at 3659.863 kb on + strand, within Sama_3082at 3659.863 kb on + strand, within Sama_3082at 3659.863 kb on + strand, within Sama_3082at 3659.863 kb on + strand, within Sama_3082at 3659.870 kb on + strand, within Sama_3082at 3659.870 kb on + strand, within Sama_3082at 3659.963 kb on + strandat 3659.963 kb on + strandat 3660.020 kb on + strandat 3660.020 kb on + strandat 3660.700 kb on + strand, within Sama_3083at 3660.700 kb on + strand, within Sama_3083at 3661.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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3,659,312 + Sama_3082 0.28 +1.1
3,659,389 + Sama_3082 0.36 -2.5
3,659,436 + Sama_3082 0.41 +1.5
3,659,436 + Sama_3082 0.41 +1.0
3,659,464 + Sama_3082 0.44 -0.7
3,659,464 + Sama_3082 0.44 -1.5
3,659,464 + Sama_3082 0.44 -0.7
3,659,464 + Sama_3082 0.44 +0.1
3,659,464 + Sama_3082 0.44 -0.1
3,659,547 + Sama_3082 0.53 -1.3
3,659,547 + Sama_3082 0.53 -0.8
3,659,585 + Sama_3082 0.56 +0.2
3,659,641 + Sama_3082 0.62 -0.1
3,659,641 + Sama_3082 0.62 -2.6
3,659,641 + Sama_3082 0.62 -0.3
3,659,641 + Sama_3082 0.62 +1.0
3,659,641 + Sama_3082 0.62 +0.1
3,659,641 + Sama_3082 0.62 -2.5
3,659,641 + Sama_3082 0.62 +0.1
3,659,664 + Sama_3082 0.65 +0.0
3,659,679 + Sama_3082 0.66 -1.5
3,659,679 + Sama_3082 0.66 -1.0
3,659,756 + Sama_3082 0.74 -0.5
3,659,763 + Sama_3082 0.75 -1.8
3,659,784 + Sama_3082 0.77 -1.1
3,659,784 + Sama_3082 0.77 +0.3
3,659,784 + Sama_3082 0.77 +0.8
3,659,784 + Sama_3082 0.77 -0.4
3,659,784 + Sama_3082 0.77 -1.1
3,659,863 + Sama_3082 0.85 -1.3
3,659,863 + Sama_3082 0.85 -0.1
3,659,863 + Sama_3082 0.85 -1.2
3,659,863 + Sama_3082 0.85 -0.0
3,659,863 + Sama_3082 0.85 +1.8
3,659,870 + Sama_3082 0.86 -0.2
3,659,870 + Sama_3082 0.86 -0.1
3,659,963 + +0.0
3,659,963 + -1.6
3,660,020 + +0.4
3,660,020 + -1.8
3,660,700 + Sama_3083 0.67 +0.5
3,660,700 + Sama_3083 0.67 +1.6
3,661,006 + -0.2

Or see this region's nucleotide sequence