Strain Fitness in Shewanella amazonensis SB2B around Sama_3050

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
3,626,851	+	tolC	Sama_3048	0.87	+0.6
3,626,851	+	tolC	Sama_3048	0.87	-0.3
3,626,851	+	tolC	Sama_3048	0.87	+0.8
3,626,851	+	tolC	Sama_3048	0.87	+0.6
3,626,870	+	tolC	Sama_3048	0.89	-0.8
3,626,897	+				-0.8
3,626,897	+				-0.2
3,626,897	+				-0.8
3,626,897	+				+1.2
3,626,916	+				+0.8
3,626,922	+				-0.3
3,627,029	-				-1.3
3,627,078	-				-0.2
3,627,078	-				+0.8
3,627,078	-				-1.6
3,627,118	-				+1.4
3,627,118	-				+0.8
3,627,129	+				+0.8
3,627,201	+		Sama_3049	0.17	+0.7
3,627,202	-		Sama_3049	0.17	-0.5
3,627,202	-		Sama_3049	0.17	-0.0
3,627,233	+		Sama_3049	0.21	+0.9
3,627,233	+		Sama_3049	0.21	-0.7
3,627,233	+		Sama_3049	0.21	-0.0
3,627,234	-		Sama_3049	0.21	+0.2
3,627,234	-		Sama_3049	0.21	+1.2
3,627,234	-		Sama_3049	0.21	+1.2
3,627,240	-		Sama_3049	0.22	+1.2
3,627,323	+		Sama_3049	0.33	+0.3
3,627,333	+		Sama_3049	0.35	-1.2
3,627,333	+		Sama_3049	0.35	+1.0
3,627,334	-		Sama_3049	0.35	-0.2
3,627,334	-		Sama_3049	0.35	+1.1
3,627,334	-		Sama_3049	0.35	+1.2
3,627,334	-		Sama_3049	0.35	-2.5
3,627,334	-		Sama_3049	0.35	+1.3
3,627,334	-		Sama_3049	0.35	+0.2
3,627,346	-		Sama_3049	0.36	-0.5
3,627,411	-		Sama_3049	0.45	+0.4
3,627,411	-		Sama_3049	0.45	-1.4
3,627,436	+		Sama_3049	0.49	+1.8
3,627,436	+		Sama_3049	0.49	+0.2
3,627,436	-		Sama_3049	0.49	+0.3
3,627,436	+		Sama_3049	0.49	-0.3
3,627,436	+		Sama_3049	0.49	+1.6
3,627,436	+		Sama_3049	0.49	-1.1
3,627,437	-		Sama_3049	0.49	-0.5
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+2.2
3,627,437	-		Sama_3049	0.49	+0.3
3,627,437	-		Sama_3049	0.49	+0.2
3,627,437	-		Sama_3049	0.49	-0.3
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+0.2
3,627,437	-		Sama_3049	0.49	+0.5
3,627,437	-		Sama_3049	0.49	-1.2
3,627,437	-		Sama_3049	0.49	-0.0
3,627,437	-		Sama_3049	0.49	+1.2
3,627,437	-		Sama_3049	0.49	+1.3
3,627,437	-		Sama_3049	0.49	-0.1
3,627,437	-		Sama_3049	0.49	+0.6
3,627,438	+		Sama_3049	0.49	-0.4
3,627,438	+		Sama_3049	0.49	-0.9
3,627,438	+		Sama_3049	0.49	+0.5
3,627,439	-		Sama_3049	0.49	-0.3
3,627,439	-		Sama_3049	0.49	-0.3
3,627,439	-		Sama_3049	0.49	+1.0
3,627,439	-		Sama_3049	0.49	-0.1
3,627,439	-		Sama_3049	0.49	-2.1
3,627,458	+		Sama_3049	0.52	+1.3
3,627,459	-		Sama_3049	0.52	+0.7
3,627,459	-		Sama_3049	0.52	+0.3
3,627,461	+		Sama_3049	0.52	-0.9
3,627,461	+		Sama_3049	0.52	+0.2
3,627,462	-		Sama_3049	0.52	+1.4
3,627,462	-		Sama_3049	0.52	-1.2
3,627,498	+		Sama_3049	0.57	-0.3
3,627,499	-		Sama_3049	0.57	-0.2
3,627,499	-		Sama_3049	0.57	-0.2
3,627,499	-		Sama_3049	0.57	+1.4
3,627,499	-		Sama_3049	0.57	+1.7
3,627,499	-		Sama_3049	0.57	-0.5
3,627,500	+		Sama_3049	0.57	+1.2
3,627,500	+		Sama_3049	0.57	-0.6
3,627,500	+		Sama_3049	0.57	-1.0
3,627,500	+		Sama_3049	0.57	+0.8
3,627,501	-		Sama_3049	0.57	+1.0
3,627,501	-		Sama_3049	0.57	-0.3
3,627,501	-		Sama_3049	0.57	+0.2
3,627,501	-		Sama_3049	0.57	+1.3
3,627,501	-		Sama_3049	0.57	+0.6
3,627,501	-		Sama_3049	0.57	-1.9
3,627,523	-		Sama_3049	0.60	-0.8
3,627,553	-		Sama_3049	0.64	+0.6
3,627,595	-		Sama_3049	0.70	+0.6
3,627,656	+		Sama_3049	0.78	+1.5
3,627,657	-		Sama_3049	0.78	-0.0
3,627,720	-		Sama_3049	0.87	+0.8
3,627,735	+		Sama_3049	0.89	+1.3
3,627,736	-		Sama_3049	0.89	+0.2
3,627,816	+				+1.2
3,627,817	-				+1.6
3,627,817	-				+0.0
3,627,820	+				+0.8
3,627,820	+				+0.6
3,627,844	-				-0.2
3,627,877	+				+0.8
3,627,877	+				-0.8
3,627,877	+				-0.7
3,627,877	+				+1.2
3,627,878	-				+1.3
3,627,878	-				-1.3
3,627,878	-				+1.0
3,627,878	-				-2.3
3,627,878	-				-0.6
3,627,878	-				-1.3
3,627,878	-				+0.6
3,627,878	-				-0.7
3,627,878	-				+0.3
3,627,878	-				+1.6
3,627,910	+				+1.6
3,627,910	+				+1.8
3,627,911	-				-0.8
3,627,911	-				-0.0
3,627,948	+		Sama_3050	0.13	+0.2
3,627,949	-		Sama_3050	0.13	-1.0
3,627,963	-		Sama_3050	0.15	-0.2
3,627,978	+		Sama_3050	0.16	-1.3
3,627,978	+		Sama_3050	0.16	+0.4
3,627,978	+		Sama_3050	0.16	+1.2
3,627,979	-		Sama_3050	0.16	+0.7
3,627,979	-		Sama_3050	0.16	-1.4
3,627,979	-		Sama_3050	0.16	-1.2
3,627,979	-		Sama_3050	0.16	+1.0
3,627,979	-		Sama_3050	0.16	+1.3
3,627,979	-		Sama_3050	0.16	-1.2
3,627,991	-		Sama_3050	0.18	-0.4
3,627,991	-		Sama_3050	0.18	+0.6
3,628,058	+		Sama_3050	0.25	+1.1
3,628,058	+		Sama_3050	0.25	+0.6
3,628,058	+		Sama_3050	0.25	+0.7
3,628,058	+		Sama_3050	0.25	-1.8
3,628,059	-		Sama_3050	0.25	+0.2
3,628,059	-		Sama_3050	0.25	+0.6
3,628,059	-		Sama_3050	0.25	+0.6
3,628,090	+		Sama_3050	0.28	-0.4
3,628,090	+		Sama_3050	0.28	-0.2
3,628,091	-		Sama_3050	0.28	+1.7
3,628,091	-		Sama_3050	0.28	-0.7
3,628,091	-		Sama_3050	0.28	+0.5
3,628,091	-		Sama_3050	0.28	+0.5
3,628,141	-		Sama_3050	0.33	+0.7
3,628,170	-		Sama_3050	0.36	-0.2
3,628,190	+		Sama_3050	0.38	+1.2
3,628,190	+		Sama_3050	0.38	-0.7
3,628,311	-		Sama_3050	0.51	-0.3
3,628,336	+		Sama_3050	0.53	-1.0
3,628,336	+		Sama_3050	0.53	-1.4
3,628,366	+		Sama_3050	0.56	+0.3
3,628,367	-		Sama_3050	0.56	-0.2
3,628,367	-		Sama_3050	0.56	-0.0
3,628,410	-		Sama_3050	0.61	-0.7
3,628,481	+		Sama_3050	0.68	-1.8
3,628,481	+		Sama_3050	0.68	+1.2
3,628,541	+		Sama_3050	0.74	+0.5
3,628,541	+		Sama_3050	0.74	-0.9
3,628,541	+		Sama_3050	0.74	-0.5
3,628,541	+		Sama_3050	0.74	-0.7
3,628,542	-		Sama_3050	0.74	-1.2
3,628,542	-		Sama_3050	0.74	-0.4
3,628,542	-		Sama_3050	0.74	+1.7
3,628,542	-		Sama_3050	0.74	+0.2
3,628,544	+		Sama_3050	0.75	+1.7
3,628,544	+		Sama_3050	0.75	-0.2
3,628,544	+		Sama_3050	0.75	-0.8
3,628,545	-		Sama_3050	0.75	+0.5
3,628,545	-		Sama_3050	0.75	+0.3
3,628,545	-		Sama_3050	0.75	-2.1
3,628,550	+		Sama_3050	0.75	-2.4
3,628,550	+		Sama_3050	0.75	-0.7
3,628,568	+		Sama_3050	0.77	+0.2
3,628,568	+		Sama_3050	0.77	-1.0
3,628,569	-		Sama_3050	0.77	+0.8
3,628,569	-		Sama_3050	0.77	-0.4
3,628,569	-		Sama_3050	0.77	-0.9
3,628,569	-		Sama_3050	0.77	+0.7
3,628,572	-		Sama_3050	0.77	+1.2
3,628,572	-		Sama_3050	0.77	+1.3
3,628,572	-		Sama_3050	0.77	-1.0
3,628,572	-		Sama_3050	0.77	-1.5
3,628,572	-		Sama_3050	0.77	+0.7
3,628,619	+		Sama_3050	0.82	+1.6
3,628,620	-		Sama_3050	0.82	-0.2
3,628,645	+		Sama_3050	0.85	+0.6
3,628,646	-		Sama_3050	0.85	+1.0
3,628,654	-		Sama_3050	0.86	+0.6
3,628,732	+				-1.7
3,628,732	+				-0.0
3,628,733	-				-0.8
3,628,733	-				+0.7
3,628,733	-				-1.5
3,628,746	+				+0.6
3,628,746	+				-0.3
3,628,747	-				+0.2
3,628,747	-				-0.5
3,628,747	-				-0.0
3,628,747	-				-0.1
3,628,747	-				-0.8
3,628,747	-				-0.8
3,628,747	-				+1.2
3,628,747	-				+0.1
3,628,747	-				-1.1
3,628,747	-				-1.7
3,628,747	-				-1.1
3,628,747	-				-1.8
3,628,747	-				-0.4
3,628,806	+				+0.3
3,628,807	-				-0.3
3,628,807	-				-1.1
3,628,807	-				+0.6
3,628,807	-				-0.0
3,628,807	-				+1.0
3,628,868	+		Sama_3051	0.13	+1.2
3,628,868	+		Sama_3051	0.13	+0.5
3,628,869	-		Sama_3051	0.13	+0.1
3,628,869	-		Sama_3051	0.13	-0.2
3,628,869	-		Sama_3051	0.13	-0.7
3,628,869	-		Sama_3051	0.13	-1.2
3,628,897	+		Sama_3051	0.19	+1.2
3,628,897	+		Sama_3051	0.19	+0.5
3,628,987	+		Sama_3051	0.38	+0.3
3,628,987	+		Sama_3051	0.38	+0.6
3,628,988	-		Sama_3051	0.38	-0.3
3,628,988	-		Sama_3051	0.38	+0.3
3,629,029	+		Sama_3051	0.47	+1.6
3,629,029	+		Sama_3051	0.47	-0.8
3,629,029	+		Sama_3051	0.47	-1.6
3,629,030	-		Sama_3051	0.47	+0.8
3,629,030	-		Sama_3051	0.47	+1.2
3,629,030	-		Sama_3051	0.47	-0.0
3,629,030	-		Sama_3051	0.47	-0.2
3,629,030	-		Sama_3051	0.47	+0.8
3,629,030	-		Sama_3051	0.47	-0.0
3,629,030	-		Sama_3051	0.47	+0.2
3,629,030	-		Sama_3051	0.47	+0.5
3,629,033	+		Sama_3051	0.47	+2.2
3,629,033	+		Sama_3051	0.47	+0.3
3,629,034	-		Sama_3051	0.48	+1.7
3,629,034	-		Sama_3051	0.48	-0.4
3,629,034	-		Sama_3051	0.48	-2.5
3,629,034	-		Sama_3051	0.48	+0.6
3,629,034	-		Sama_3051	0.48	-1.0
3,629,034	-		Sama_3051	0.48	-1.1
3,629,034	-		Sama_3051	0.48	+0.8
3,629,034	-		Sama_3051	0.48	-0.8
3,629,034	-		Sama_3051	0.48	-0.7
3,629,034	-		Sama_3051	0.48	-0.8
3,629,136	+		Sama_3051	0.69	-0.1
3,629,137	-		Sama_3051	0.69	-2.3
3,629,137	+		Sama_3051	0.69	+0.2
3,629,147	-		Sama_3051	0.71	-0.4
3,629,147	-		Sama_3051	0.71	-0.2
3,629,147	-		Sama_3051	0.71	-0.6
3,629,149	+		Sama_3051	0.72	+0.6
3,629,189	+		Sama_3051	0.80	+1.0
3,629,189	+		Sama_3051	0.80	-1.4
3,629,189	+		Sama_3051	0.80	-0.1
3,629,190	-		Sama_3051	0.80	-1.7
3,629,190	-		Sama_3051	0.80	+0.7
3,629,190	-		Sama_3051	0.80	-1.2
3,629,192	+		Sama_3051	0.81	+0.1
3,629,192	+		Sama_3051	0.81	+3.3
3,629,193	-		Sama_3051	0.81	+0.8
3,629,194	+		Sama_3051	0.81	-0.2
3,629,194	+		Sama_3051	0.81	-0.5
3,629,194	+		Sama_3051	0.81	+1.9
3,629,195	-		Sama_3051	0.81	-1.2
3,629,242	+				+0.2
3,629,275	+				-0.0
3,629,275	+				-0.8
3,629,275	+				+0.7
3,629,275	+				-0.8
3,629,275	+				-1.1
3,629,275	+				-0.0
3,629,276	-				-0.4
3,629,276	-				-0.0
3,629,276	-				-0.0
3,629,276	-				+0.4
3,629,276	-				+1.8
3,629,276	-				-0.5
3,629,276	-				+0.2
3,629,276	-				+1.2
3,629,298	-				-0.1
3,629,298	-				+0.4
3,629,298	-				-1.4
3,629,321	+				+0.2
3,629,321	+				+0.6
3,629,321	+				+1.2
3,629,322	-				+0.3
3,629,322	-				-0.1
3,629,326	+				+0.8
3,629,327	-				-1.2
3,629,356	+				+0.4
3,629,356	+				-2.2
3,629,357	-				-1.2
3,629,357	-				+0.3
3,629,367	-				+2.2
3,629,393	-		Sama_3052	0.10	+0.5
3,629,393	-		Sama_3052	0.10	-0.8
3,629,402	+		Sama_3052	0.12	-0.5
3,629,402	+		Sama_3052	0.12	+0.1
3,629,402	+		Sama_3052	0.12	+0.5
3,629,402	+		Sama_3052	0.12	-0.2
3,629,402	+		Sama_3052	0.12	-1.1
3,629,402	+		Sama_3052	0.12	+0.2
3,629,402	+		Sama_3052	0.12	+1.0
3,629,402	+		Sama_3052	0.12	+0.7
3,629,403	-		Sama_3052	0.12	-0.3
3,629,403	-		Sama_3052	0.12	-2.3
3,629,403	-		Sama_3052	0.12	-1.3
3,629,403	-		Sama_3052	0.12	-0.7
3,629,403	-		Sama_3052	0.12	-3.3
3,629,403	-		Sama_3052	0.12	+0.7
3,629,406	+		Sama_3052	0.12	+0.0
3,629,406	+		Sama_3052	0.12	-0.8
3,629,406	+		Sama_3052	0.12	+1.0
3,629,407	-		Sama_3052	0.12	+0.2
3,629,407	-		Sama_3052	0.12	-0.8
3,629,407	-		Sama_3052	0.12	-0.8
3,629,407	-		Sama_3052	0.12	+0.6
3,629,407	-		Sama_3052	0.12	-0.8
3,629,407	-		Sama_3052	0.12	-0.3
3,629,424	+		Sama_3052	0.15	-1.1
3,629,424	+		Sama_3052	0.15	+0.5
3,629,424	+		Sama_3052	0.15	+1.2
3,629,425	-		Sama_3052	0.15	-0.8
3,629,425	-		Sama_3052	0.15	-0.7
3,629,425	-		Sama_3052	0.15	-0.0
3,629,425	-		Sama_3052	0.15	-0.7
3,629,425	-		Sama_3052	0.15	+0.8
3,629,429	+		Sama_3052	0.15	-0.1
3,629,429	+		Sama_3052	0.15	-1.6
3,629,429	+		Sama_3052	0.15	+0.6
3,629,430	-		Sama_3052	0.15	-0.4
3,629,430	-		Sama_3052	0.15	-1.9
3,629,430	-		Sama_3052	0.15	+1.2
3,629,430	-		Sama_3052	0.15	+0.6
3,629,467	+		Sama_3052	0.20	+1.4
3,629,468	-		Sama_3052	0.21	-0.0
3,629,468	-		Sama_3052	0.21	+0.8
3,629,468	-		Sama_3052	0.21	+0.2
3,629,468	-		Sama_3052	0.21	-0.9
3,629,537	-		Sama_3052	0.30	-0.8
3,629,568	+		Sama_3052	0.34	+0.3
3,629,586	-		Sama_3052	0.36	-1.7
3,629,586	-		Sama_3052	0.36	-0.7
3,629,627	+		Sama_3052	0.42	-0.2
3,629,636	+		Sama_3052	0.43	+0.3
3,629,636	+		Sama_3052	0.43	-1.3
3,629,636	+		Sama_3052	0.43	-0.6
3,629,637	-		Sama_3052	0.43	+0.5
3,629,637	-		Sama_3052	0.43	+0.3
3,629,641	+		Sama_3052	0.44	-0.5
3,629,641	+		Sama_3052	0.44	-1.0
3,629,641	+		Sama_3052	0.44	-0.9
3,629,642	-		Sama_3052	0.44	-1.3
3,629,642	-		Sama_3052	0.44	-1.4
3,629,642	-		Sama_3052	0.44	+2.4
3,629,642	-		Sama_3052	0.44	-0.1
3,629,664	+		Sama_3052	0.47	+1.9
3,629,665	-		Sama_3052	0.47	+1.6
3,629,735	+		Sama_3052	0.57	-0.9
3,629,736	-		Sama_3052	0.57	+0.2
3,629,736	-		Sama_3052	0.57	-0.3
3,629,736	-		Sama_3052	0.57	-1.5
3,629,744	-		Sama_3052	0.58	+1.2
3,629,782	+		Sama_3052	0.63	-0.8
3,629,783	-		Sama_3052	0.63	-0.7
3,629,783	-		Sama_3052	0.63	+0.3
3,629,783	-		Sama_3052	0.63	+0.2
3,629,783	-		Sama_3052	0.63	-0.3