Strain Fitness in Shewanella amazonensis SB2B around Sama_3049

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
3,626,145	+	tolC	Sama_3048	0.33	-0.8
3,626,145	+	tolC	Sama_3048	0.33	-1.0
3,626,145	+	tolC	Sama_3048	0.33	+1.6
3,626,145	+	tolC	Sama_3048	0.33	-0.2
3,626,145	+	tolC	Sama_3048	0.33	+0.3
3,626,145	+	tolC	Sama_3048	0.33	-0.0
3,626,239	+	tolC	Sama_3048	0.40	-0.4
3,626,239	+	tolC	Sama_3048	0.40	+1.2
3,626,239	+	tolC	Sama_3048	0.40	+0.6
3,626,239	+	tolC	Sama_3048	0.40	+1.2
3,626,239	+	tolC	Sama_3048	0.40	-0.5
3,626,240	-	tolC	Sama_3048	0.40	+1.2
3,626,297	+	tolC	Sama_3048	0.44	+0.6
3,626,313	+	tolC	Sama_3048	0.46	+2.2
3,626,313	+	tolC	Sama_3048	0.46	-0.0
3,626,313	+	tolC	Sama_3048	0.46	+0.3
3,626,313	+	tolC	Sama_3048	0.46	-0.0
3,626,348	+	tolC	Sama_3048	0.48	+0.2
3,626,348	+	tolC	Sama_3048	0.48	-0.8
3,626,348	+	tolC	Sama_3048	0.48	+0.3
3,626,348	+	tolC	Sama_3048	0.48	+1.6
3,626,348	+	tolC	Sama_3048	0.48	+0.3
3,626,354	+	tolC	Sama_3048	0.49	+0.3
3,626,354	+	tolC	Sama_3048	0.49	-0.8
3,626,444	+	tolC	Sama_3048	0.56	-0.0
3,626,471	+	tolC	Sama_3048	0.58	+0.8
3,626,544	+	tolC	Sama_3048	0.64	+0.6
3,626,580	+	tolC	Sama_3048	0.66	-0.5
3,626,580	+	tolC	Sama_3048	0.66	+0.2
3,626,612	+	tolC	Sama_3048	0.69	+1.6
3,626,612	+	tolC	Sama_3048	0.69	-0.8
3,626,650	+	tolC	Sama_3048	0.72	+0.2
3,626,650	+	tolC	Sama_3048	0.72	+0.8
3,626,664	+	tolC	Sama_3048	0.73	-0.2
3,626,664	+	tolC	Sama_3048	0.73	+0.6
3,626,664	+	tolC	Sama_3048	0.73	-0.3
3,626,666	+	tolC	Sama_3048	0.73	+0.2
3,626,666	+	tolC	Sama_3048	0.73	+1.6
3,626,666	+	tolC	Sama_3048	0.73	-0.8
3,626,666	+	tolC	Sama_3048	0.73	+0.6
3,626,666	+	tolC	Sama_3048	0.73	-1.4
3,626,666	+	tolC	Sama_3048	0.73	-0.2
3,626,666	+	tolC	Sama_3048	0.73	+0.6
3,626,666	+	tolC	Sama_3048	0.73	+0.6
3,626,666	+	tolC	Sama_3048	0.73	+0.6
3,626,670	+	tolC	Sama_3048	0.73	-0.8
3,626,670	+	tolC	Sama_3048	0.73	-0.3
3,626,670	+	tolC	Sama_3048	0.73	+0.2
3,626,670	+	tolC	Sama_3048	0.73	+0.2
3,626,670	+	tolC	Sama_3048	0.73	-0.3
3,626,670	+	tolC	Sama_3048	0.73	-1.8
3,626,671	-	tolC	Sama_3048	0.73	-1.0
3,626,692	+	tolC	Sama_3048	0.75	-1.0
3,626,703	+	tolC	Sama_3048	0.76	+0.6
3,626,725	+	tolC	Sama_3048	0.77	+0.3
3,626,725	+	tolC	Sama_3048	0.77	+1.2
3,626,729	+	tolC	Sama_3048	0.78	-0.0
3,626,765	+	tolC	Sama_3048	0.81	+0.8
3,626,775	+	tolC	Sama_3048	0.81	+0.6
3,626,775	+	tolC	Sama_3048	0.81	-0.4
3,626,775	+	tolC	Sama_3048	0.81	+0.3
3,626,775	+	tolC	Sama_3048	0.81	+0.3
3,626,851	+	tolC	Sama_3048	0.87	+0.6
3,626,851	+	tolC	Sama_3048	0.87	-0.3
3,626,851	+	tolC	Sama_3048	0.87	+0.8
3,626,851	+	tolC	Sama_3048	0.87	+0.6
3,626,870	+	tolC	Sama_3048	0.89	-0.8
3,626,897	+				-0.8
3,626,897	+				-0.2
3,626,897	+				-0.8
3,626,897	+				+1.2
3,626,916	+				+0.8
3,626,922	+				-0.3
3,627,029	-				-1.3
3,627,078	-				-0.2
3,627,078	-				+0.8
3,627,078	-				-1.6
3,627,118	-				+1.4
3,627,118	-				+0.8
3,627,129	+				+0.8
3,627,201	+		Sama_3049	0.17	+0.7
3,627,202	-		Sama_3049	0.17	-0.5
3,627,202	-		Sama_3049	0.17	-0.0
3,627,233	+		Sama_3049	0.21	+0.9
3,627,233	+		Sama_3049	0.21	-0.7
3,627,233	+		Sama_3049	0.21	-0.0
3,627,234	-		Sama_3049	0.21	+0.2
3,627,234	-		Sama_3049	0.21	+1.2
3,627,234	-		Sama_3049	0.21	+1.2
3,627,240	-		Sama_3049	0.22	+1.2
3,627,323	+		Sama_3049	0.33	+0.3
3,627,333	+		Sama_3049	0.35	-1.2
3,627,333	+		Sama_3049	0.35	+1.0
3,627,334	-		Sama_3049	0.35	-0.2
3,627,334	-		Sama_3049	0.35	+1.1
3,627,334	-		Sama_3049	0.35	+1.2
3,627,334	-		Sama_3049	0.35	-2.5
3,627,334	-		Sama_3049	0.35	+1.3
3,627,334	-		Sama_3049	0.35	+0.2
3,627,346	-		Sama_3049	0.36	-0.5
3,627,411	-		Sama_3049	0.45	+0.4
3,627,411	-		Sama_3049	0.45	-1.4
3,627,436	+		Sama_3049	0.49	+1.8
3,627,436	+		Sama_3049	0.49	+0.2
3,627,436	-		Sama_3049	0.49	+0.3
3,627,436	+		Sama_3049	0.49	-0.3
3,627,436	+		Sama_3049	0.49	+1.6
3,627,436	+		Sama_3049	0.49	-1.1
3,627,437	-		Sama_3049	0.49	-0.5
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+2.2
3,627,437	-		Sama_3049	0.49	+0.3
3,627,437	-		Sama_3049	0.49	+0.2
3,627,437	-		Sama_3049	0.49	-0.3
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+0.2
3,627,437	-		Sama_3049	0.49	+0.5
3,627,437	-		Sama_3049	0.49	-1.2
3,627,437	-		Sama_3049	0.49	-0.0
3,627,437	-		Sama_3049	0.49	+1.2
3,627,437	-		Sama_3049	0.49	+1.3
3,627,437	-		Sama_3049	0.49	-0.1
3,627,437	-		Sama_3049	0.49	+0.6
3,627,438	+		Sama_3049	0.49	-0.4
3,627,438	+		Sama_3049	0.49	-0.9
3,627,438	+		Sama_3049	0.49	+0.5
3,627,439	-		Sama_3049	0.49	-0.3
3,627,439	-		Sama_3049	0.49	-0.3
3,627,439	-		Sama_3049	0.49	+1.0
3,627,439	-		Sama_3049	0.49	-0.1
3,627,439	-		Sama_3049	0.49	-2.1
3,627,458	+		Sama_3049	0.52	+1.3
3,627,459	-		Sama_3049	0.52	+0.7
3,627,459	-		Sama_3049	0.52	+0.3
3,627,461	+		Sama_3049	0.52	-0.9
3,627,461	+		Sama_3049	0.52	+0.2
3,627,462	-		Sama_3049	0.52	+1.4
3,627,462	-		Sama_3049	0.52	-1.2
3,627,498	+		Sama_3049	0.57	-0.3
3,627,499	-		Sama_3049	0.57	-0.2
3,627,499	-		Sama_3049	0.57	-0.2
3,627,499	-		Sama_3049	0.57	+1.4
3,627,499	-		Sama_3049	0.57	+1.7
3,627,499	-		Sama_3049	0.57	-0.5
3,627,500	+		Sama_3049	0.57	+1.2
3,627,500	+		Sama_3049	0.57	-0.6
3,627,500	+		Sama_3049	0.57	-1.0
3,627,500	+		Sama_3049	0.57	+0.8
3,627,501	-		Sama_3049	0.57	+1.0
3,627,501	-		Sama_3049	0.57	-0.3
3,627,501	-		Sama_3049	0.57	+0.2
3,627,501	-		Sama_3049	0.57	+1.3
3,627,501	-		Sama_3049	0.57	+0.6
3,627,501	-		Sama_3049	0.57	-1.9
3,627,523	-		Sama_3049	0.60	-0.8
3,627,553	-		Sama_3049	0.64	+0.6
3,627,595	-		Sama_3049	0.70	+0.6
3,627,656	+		Sama_3049	0.78	+1.5
3,627,657	-		Sama_3049	0.78	-0.0
3,627,720	-		Sama_3049	0.87	+0.8
3,627,735	+		Sama_3049	0.89	+1.3
3,627,736	-		Sama_3049	0.89	+0.2
3,627,816	+				+1.2
3,627,817	-				+1.6
3,627,817	-				+0.0
3,627,820	+				+0.8
3,627,820	+				+0.6
3,627,844	-				-0.2
3,627,877	+				+0.8
3,627,877	+				-0.8
3,627,877	+				-0.7
3,627,877	+				+1.2
3,627,878	-				+1.3
3,627,878	-				-1.3
3,627,878	-				+1.0
3,627,878	-				-2.3
3,627,878	-				-0.6
3,627,878	-				-1.3
3,627,878	-				+0.6
3,627,878	-				-0.7
3,627,878	-				+0.3
3,627,878	-				+1.6
3,627,910	+				+1.6
3,627,910	+				+1.8
3,627,911	-				-0.8
3,627,911	-				-0.0
3,627,948	+		Sama_3050	0.13	+0.2
3,627,949	-		Sama_3050	0.13	-1.0
3,627,963	-		Sama_3050	0.15	-0.2
3,627,978	+		Sama_3050	0.16	-1.3
3,627,978	+		Sama_3050	0.16	+0.4
3,627,978	+		Sama_3050	0.16	+1.2
3,627,979	-		Sama_3050	0.16	+0.7
3,627,979	-		Sama_3050	0.16	-1.4
3,627,979	-		Sama_3050	0.16	-1.2
3,627,979	-		Sama_3050	0.16	+1.0
3,627,979	-		Sama_3050	0.16	+1.3
3,627,979	-		Sama_3050	0.16	-1.2
3,627,991	-		Sama_3050	0.18	-0.4
3,627,991	-		Sama_3050	0.18	+0.6
3,628,058	+		Sama_3050	0.25	+1.1
3,628,058	+		Sama_3050	0.25	+0.6
3,628,058	+		Sama_3050	0.25	+0.7
3,628,058	+		Sama_3050	0.25	-1.8
3,628,059	-		Sama_3050	0.25	+0.2
3,628,059	-		Sama_3050	0.25	+0.6
3,628,059	-		Sama_3050	0.25	+0.6
3,628,090	+		Sama_3050	0.28	-0.4
3,628,090	+		Sama_3050	0.28	-0.2
3,628,091	-		Sama_3050	0.28	+1.7
3,628,091	-		Sama_3050	0.28	-0.7
3,628,091	-		Sama_3050	0.28	+0.5
3,628,091	-		Sama_3050	0.28	+0.5
3,628,141	-		Sama_3050	0.33	+0.7
3,628,170	-		Sama_3050	0.36	-0.2
3,628,190	+		Sama_3050	0.38	+1.2
3,628,190	+		Sama_3050	0.38	-0.7
3,628,311	-		Sama_3050	0.51	-0.3
3,628,336	+		Sama_3050	0.53	-1.0
3,628,336	+		Sama_3050	0.53	-1.4
3,628,366	+		Sama_3050	0.56	+0.3
3,628,367	-		Sama_3050	0.56	-0.2
3,628,367	-		Sama_3050	0.56	-0.0
3,628,410	-		Sama_3050	0.61	-0.7
3,628,481	+		Sama_3050	0.68	-1.8
3,628,481	+		Sama_3050	0.68	+1.2
3,628,541	+		Sama_3050	0.74	+0.5
3,628,541	+		Sama_3050	0.74	-0.9
3,628,541	+		Sama_3050	0.74	-0.5
3,628,541	+		Sama_3050	0.74	-0.7
3,628,542	-		Sama_3050	0.74	-1.2
3,628,542	-		Sama_3050	0.74	-0.4
3,628,542	-		Sama_3050	0.74	+1.7
3,628,542	-		Sama_3050	0.74	+0.2
3,628,544	+		Sama_3050	0.75	+1.7
3,628,544	+		Sama_3050	0.75	-0.2
3,628,544	+		Sama_3050	0.75	-0.8
3,628,545	-		Sama_3050	0.75	+0.5
3,628,545	-		Sama_3050	0.75	+0.3
3,628,545	-		Sama_3050	0.75	-2.1
3,628,550	+		Sama_3050	0.75	-2.4
3,628,550	+		Sama_3050	0.75	-0.7
3,628,568	+		Sama_3050	0.77	+0.2
3,628,568	+		Sama_3050	0.77	-1.0
3,628,569	-		Sama_3050	0.77	+0.8
3,628,569	-		Sama_3050	0.77	-0.4
3,628,569	-		Sama_3050	0.77	-0.9
3,628,569	-		Sama_3050	0.77	+0.7
3,628,572	-		Sama_3050	0.77	+1.2
3,628,572	-		Sama_3050	0.77	+1.3
3,628,572	-		Sama_3050	0.77	-1.0
3,628,572	-		Sama_3050	0.77	-1.5
3,628,572	-		Sama_3050	0.77	+0.7
3,628,619	+		Sama_3050	0.82	+1.6
3,628,620	-		Sama_3050	0.82	-0.2
3,628,645	+		Sama_3050	0.85	+0.6
3,628,646	-		Sama_3050	0.85	+1.0
3,628,654	-		Sama_3050	0.86	+0.6
3,628,732	+				-1.7
3,628,732	+				-0.0
3,628,733	-				-0.8
3,628,733	-				+0.7
3,628,733	-				-1.5
3,628,746	+				+0.6
3,628,746	+				-0.3
3,628,747	-				+0.2
3,628,747	-				-0.5
3,628,747	-				-0.0
3,628,747	-				-0.1
3,628,747	-				-0.8
3,628,747	-				-0.8
3,628,747	-				+1.2
3,628,747	-				+0.1
3,628,747	-				-1.1
3,628,747	-				-1.7
3,628,747	-				-1.1
3,628,747	-				-1.8
3,628,747	-				-0.4
3,628,806	+				+0.3
3,628,807	-				-0.3
3,628,807	-				-1.1
3,628,807	-				+0.6
3,628,807	-				-0.0
3,628,807	-				+1.0