Strain Fitness in Shewanella amazonensis SB2B around Sama_2987

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
3,557,049	+	napH	Sama_2985	0.46	-1.2
3,557,050	-	napH	Sama_2985	0.46	+0.2
3,557,054	+	napH	Sama_2985	0.47	+0.6
3,557,054	+	napH	Sama_2985	0.47	+0.5
3,557,054	+	napH	Sama_2985	0.47	-0.7
3,557,054	+	napH	Sama_2985	0.47	+4.6
3,557,054	+	napH	Sama_2985	0.47	-1.6
3,557,054	+	napH	Sama_2985	0.47	-0.9
3,557,055	-	napH	Sama_2985	0.47	-2.1
3,557,055	-	napH	Sama_2985	0.47	-1.4
3,557,206	+	napH	Sama_2985	0.64	-0.6
3,557,207	-	napH	Sama_2985	0.64	-0.2
3,557,207	-	napH	Sama_2985	0.64	-1.0
3,557,207	-	napH	Sama_2985	0.64	-0.6
3,557,272	+	napH	Sama_2985	0.71	-0.7
3,557,272	+	napH	Sama_2985	0.71	+0.1
3,557,272	+	napH	Sama_2985	0.71	-0.0
3,557,272	+	napH	Sama_2985	0.71	-0.3
3,557,273	-	napH	Sama_2985	0.71	-0.7
3,557,273	-	napH	Sama_2985	0.71	+0.4
3,557,393	+	napH	Sama_2985	0.84	+0.6
3,557,393	+	napH	Sama_2985	0.84	-0.7
3,557,394	-	napH	Sama_2985	0.84	-0.5
3,557,394	-	napH	Sama_2985	0.84	-1.0
3,557,394	-	napH	Sama_2985	0.84	-0.9
3,557,394	-	napH	Sama_2985	0.84	+0.2
3,557,427	-	napH	Sama_2985	0.88	-0.6
3,557,449	+				-1.5
3,557,450	-				-2.4
3,557,450	-				-1.0
3,557,450	-				+0.2
3,557,458	-				-1.7
3,557,471	+				+0.8
3,557,471	+				+3.2
3,557,471	+				+0.2
3,557,472	-				-1.4
3,557,472	-				+0.7
3,557,483	+				+1.6
3,557,544	+				-0.3
3,557,545	-				+1.2
3,557,545	-				+0.2
3,557,553	+				+0.4
3,557,553	+				-1.8
3,557,553	+				+1.7
3,557,553	+				+0.2
3,557,553	+				-0.3
3,557,554	-				-1.2
3,557,687	+		Sama_2986	0.35	-0.8
3,557,688	-		Sama_2986	0.36	-0.7
3,557,716	+		Sama_2986	0.42	-0.7
3,557,716	+		Sama_2986	0.42	-1.7
3,557,716	+		Sama_2986	0.42	-1.3
3,557,717	-		Sama_2986	0.42	+1.6
3,557,717	-		Sama_2986	0.42	+1.9
3,557,720	+		Sama_2986	0.43	-0.4
3,557,720	+		Sama_2986	0.43	-0.0
3,557,720	+		Sama_2986	0.43	+1.4
3,557,720	+		Sama_2986	0.43	-1.2
3,557,720	+		Sama_2986	0.43	-0.8
3,557,721	-		Sama_2986	0.43	-0.4
3,557,721	-		Sama_2986	0.43	-0.0
3,557,721	-		Sama_2986	0.43	-0.6
3,557,721	-		Sama_2986	0.43	-0.3
3,557,721	-		Sama_2986	0.43	-0.8
3,557,721	-		Sama_2986	0.43	-1.8
3,557,741	-		Sama_2986	0.48	-0.5
3,557,741	-		Sama_2986	0.48	-0.9
3,557,741	-		Sama_2986	0.48	-0.7
3,557,759	+		Sama_2986	0.52	-0.8
3,557,760	-		Sama_2986	0.52	-0.9
3,557,760	-		Sama_2986	0.52	-1.0
3,557,772	+		Sama_2986	0.55	-0.6
3,557,772	+		Sama_2986	0.55	-0.6
3,557,772	+		Sama_2986	0.55	-1.2
3,557,773	-		Sama_2986	0.55	+1.9
3,557,773	-		Sama_2986	0.55	+0.4
3,557,777	-		Sama_2986	0.56	+0.4
3,557,888	+		Sama_2986	0.82	+1.8
3,557,888	+		Sama_2986	0.82	-0.8
3,557,888	+		Sama_2986	0.82	-0.7
3,557,888	+		Sama_2986	0.82	-0.8
3,557,888	+		Sama_2986	0.82	-0.0
3,557,888	+		Sama_2986	0.82	-0.7
3,557,889	-		Sama_2986	0.82	+1.2
3,557,889	-		Sama_2986	0.82	+0.5
3,557,889	-		Sama_2986	0.82	-0.5
3,557,889	-		Sama_2986	0.82	+1.4
3,557,963	+				+0.6
3,557,964	-				+0.6
3,557,964	-				+1.2
3,558,017	+				-1.0
3,558,017	+				+1.2
3,558,018	-				-1.6
3,558,033	-				-1.1
3,558,033	-				-0.0
3,558,094	-				+7.3
3,558,121	+				+1.2
3,558,122	-				-0.5
3,558,122	-				-1.9
3,558,122	-				-1.8
3,558,139	-		Sama_2987	0.11	-1.9
3,558,248	+		Sama_2987	0.23	+1.9
3,558,248	+		Sama_2987	0.23	-0.8
3,558,248	+		Sama_2987	0.23	-0.9
3,558,248	+		Sama_2987	0.23	-0.0
3,558,249	-		Sama_2987	0.23	-0.1
3,558,291	+		Sama_2987	0.28	+1.6
3,558,292	-		Sama_2987	0.28	-0.2
3,558,292	-		Sama_2987	0.28	-1.2
3,558,292	-		Sama_2987	0.28	-1.3
3,558,326	+		Sama_2987	0.32	-0.6
3,558,327	-		Sama_2987	0.32	+0.2
3,558,552	+		Sama_2987	0.57	-1.3
3,558,552	+		Sama_2987	0.57	-1.6
3,558,553	-		Sama_2987	0.57	-1.5
3,558,553	-		Sama_2987	0.57	-0.7
3,558,570	-		Sama_2987	0.59	+0.7
3,558,611	+		Sama_2987	0.63	+0.4
3,558,611	+		Sama_2987	0.63	-0.7
3,558,611	+		Sama_2987	0.63	+0.4
3,558,739	-		Sama_2987	0.78	-1.6
3,558,739	-		Sama_2987	0.78	-0.1
3,558,809	+		Sama_2987	0.85	-0.5
3,558,809	+		Sama_2987	0.85	-0.2
3,558,809	+		Sama_2987	0.85	-1.7
3,558,810	-		Sama_2987	0.85	-1.2
3,558,810	-		Sama_2987	0.85	-0.8
3,558,842	+		Sama_2987	0.89	+0.7
3,558,843	-		Sama_2987	0.89	-1.0
3,558,859	+				+0.6
3,558,859	+				-1.0
3,558,859	+				+0.4
3,558,860	-				+0.6
3,558,860	-				-0.6
3,558,920	+				-0.6
3,558,930	+				+0.7
3,558,930	+				+0.2
3,558,930	+				+0.8
3,558,931	-				-0.2
3,558,969	-				-0.0
3,558,987	+				-0.7
3,558,988	-				-0.3
3,558,988	-				+1.4
3,558,988	-				+1.4
3,558,988	-				+0.7
3,558,988	-				-0.2
3,558,994	+				-0.3
3,559,001	-				+0.2
3,559,018	-				+0.3
3,559,022	-				-2.3
3,559,026	+				-0.3
3,559,115	-				-0.7
3,559,115	-				+0.6
3,559,265	+		Sama_2988	0.29	-0.4
3,559,265	+		Sama_2988	0.29	+1.8
3,559,266	-		Sama_2988	0.29	-0.6
3,559,329	+		Sama_2988	0.39	-0.5
3,559,330	-		Sama_2988	0.39	+0.4
3,559,458	+		Sama_2988	0.60	-1.8
3,559,458	+		Sama_2988	0.60	-1.9
3,559,458	+		Sama_2988	0.60	+0.8
3,559,459	-		Sama_2988	0.60	-0.8
3,559,459	-		Sama_2988	0.60	-0.2
3,559,565	+		Sama_2988	0.77	-0.7
3,559,565	+		Sama_2988	0.77	-0.9
3,559,565	+		Sama_2988	0.77	-1.2
3,559,565	+		Sama_2988	0.77	-0.5
3,559,566	-		Sama_2988	0.77	-1.3
3,559,570	+		Sama_2988	0.78	+0.1
3,559,570	+		Sama_2988	0.78	-1.0
3,559,571	-		Sama_2988	0.78	+1.2
3,559,598	+		Sama_2988	0.82	-0.2
3,559,598	+		Sama_2988	0.82	+1.0
3,559,599	-		Sama_2988	0.82	-0.7
3,559,599	-		Sama_2988	0.82	-2.5
3,559,599	-		Sama_2988	0.82	-1.0
3,559,627	-		Sama_2988	0.87	+1.0
3,559,641	-		Sama_2988	0.89	-0.7
3,559,656	+				-1.5
3,559,656	+				-0.4
3,559,656	+				-1.3
3,559,656	+				+0.4
3,559,657	-				-0.0
3,559,657	-				+0.8
3,559,657	-				-0.7
3,559,657	-				-1.8
3,559,678	+				-0.9
3,559,678	+				+0.3
3,559,678	+				-1.2
3,559,679	-				-1.4
3,559,679	-				-1.2
3,559,679	-				+0.4
3,559,687	-				+0.6
3,559,719	+				+0.6
3,559,719	+				-0.0
3,559,720	-				-0.3
3,559,735	-				-0.4
3,559,735	-				-0.4
3,559,735	-				-0.5
3,559,735	-				-0.9
3,559,735	-				-0.3
3,559,756	+				-1.2
3,559,756	+				-1.1
3,559,756	+				-1.2
3,559,756	+				-0.6
3,559,757	-				+1.8
3,559,764	+				-1.4
3,559,843	+				-0.9
3,559,843	+				-0.4
3,559,843	+				+0.7
3,559,843	+				+0.8
3,559,844	-				-0.8
3,559,844	-				-0.3
3,559,844	-				-1.4
3,559,847	-				-0.2
3,559,876	+				-1.7