Strain Fitness in Shewanella amazonensis SB2B around Sama_2821

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
3,359,431	+				-0.2
3,359,431	+				+0.4
3,359,431	+				+1.2
3,359,455	+	apaG	Sama_2820	0.10	+1.8
3,359,456	-	apaG	Sama_2820	0.11	+0.7
3,359,456	-	apaG	Sama_2820	0.11	+1.5
3,359,456	-	apaG	Sama_2820	0.11	-0.1
3,359,467	-	apaG	Sama_2820	0.13	-0.8
3,359,502	+	apaG	Sama_2820	0.22	-1.4
3,359,502	+	apaG	Sama_2820	0.22	+2.0
3,359,502	+	apaG	Sama_2820	0.22	+1.5
3,359,502	+	apaG	Sama_2820	0.22	-0.7
3,359,502	+	apaG	Sama_2820	0.22	+0.6
3,359,502	+	apaG	Sama_2820	0.22	-0.3
3,359,502	+	apaG	Sama_2820	0.22	-0.2
3,359,503	-	apaG	Sama_2820	0.23	+1.2
3,359,514	+	apaG	Sama_2820	0.26	-0.8
3,359,514	+	apaG	Sama_2820	0.26	+0.1
3,359,514	+	apaG	Sama_2820	0.26	-1.1
3,359,515	-	apaG	Sama_2820	0.26	-0.5
3,359,515	-	apaG	Sama_2820	0.26	-0.0
3,359,531	+	apaG	Sama_2820	0.30	-1.0
3,359,532	-	apaG	Sama_2820	0.30	+0.1
3,359,532	-	apaG	Sama_2820	0.30	+0.6
3,359,599	+	apaG	Sama_2820	0.48	+0.9
3,359,599	+	apaG	Sama_2820	0.48	+0.3
3,359,644	+	apaG	Sama_2820	0.59	-0.9
3,359,644	+	apaG	Sama_2820	0.59	-0.1
3,359,645	-	apaG	Sama_2820	0.59	-0.3
3,359,645	-	apaG	Sama_2820	0.59	+0.8
3,359,645	-	apaG	Sama_2820	0.59	-0.5
3,359,645	-	apaG	Sama_2820	0.59	+1.8
3,359,667	+	apaG	Sama_2820	0.65	-1.4
3,359,668	-	apaG	Sama_2820	0.65	+7.6
3,359,706	-	apaG	Sama_2820	0.75	+0.1
3,359,723	+	apaG	Sama_2820	0.80	+1.1
3,359,723	+	apaG	Sama_2820	0.80	+0.7
3,359,791	+				+0.1
3,359,791	+				-2.1
3,359,792	-				-2.2
3,359,799	+				-1.7
3,359,800	-				+0.6
3,359,800	-				-1.1
3,359,800	-				-1.1
3,359,800	-				-0.2
3,359,821	-				-1.4
3,359,847	+				-1.7
3,359,848	-				-1.4
3,360,028	+	apaH	Sama_2821	0.27	-0.7
3,360,029	-	apaH	Sama_2821	0.27	+0.5
3,360,069	-	apaH	Sama_2821	0.32	-1.9
3,360,105	-	apaH	Sama_2821	0.36	+1.1
3,360,152	+	apaH	Sama_2821	0.42	-0.7
3,360,152	+	apaH	Sama_2821	0.42	-0.7
3,360,152	+	apaH	Sama_2821	0.42	-1.0
3,360,152	+	apaH	Sama_2821	0.42	-0.6
3,360,152	+	apaH	Sama_2821	0.42	+0.3
3,360,152	+	apaH	Sama_2821	0.42	+1.0
3,360,153	-	apaH	Sama_2821	0.42	-0.1
3,360,153	-	apaH	Sama_2821	0.42	-2.1
3,360,235	+	apaH	Sama_2821	0.52	-1.9
3,360,236	-	apaH	Sama_2821	0.52	-0.5
3,360,252	+	apaH	Sama_2821	0.54	+1.5
3,360,252	+	apaH	Sama_2821	0.54	-0.7
3,360,253	-	apaH	Sama_2821	0.54	-0.9
3,360,253	-	apaH	Sama_2821	0.54	-1.4
3,360,253	-	apaH	Sama_2821	0.54	-0.4
3,360,266	-	apaH	Sama_2821	0.56	+0.4
3,360,276	+	apaH	Sama_2821	0.57	-0.5
3,360,276	+	apaH	Sama_2821	0.57	+1.1
3,360,276	+	apaH	Sama_2821	0.57	-0.1
3,360,276	+	apaH	Sama_2821	0.57	+0.1
3,360,276	+	apaH	Sama_2821	0.57	+0.1
3,360,277	-	apaH	Sama_2821	0.57	-1.9
3,360,277	-	apaH	Sama_2821	0.57	-0.4
3,360,277	-	apaH	Sama_2821	0.57	-0.1
3,360,277	-	apaH	Sama_2821	0.57	-1.5
3,360,333	+	apaH	Sama_2821	0.64	-0.8
3,360,334	-	apaH	Sama_2821	0.64	+0.9
3,360,334	-	apaH	Sama_2821	0.64	+1.5
3,360,370	-	apaH	Sama_2821	0.69	+0.8
3,360,370	-	apaH	Sama_2821	0.69	+0.1
3,360,458	+	apaH	Sama_2821	0.80	-1.5
3,360,458	+	apaH	Sama_2821	0.80	-0.5
3,360,458	+	apaH	Sama_2821	0.80	+0.2
3,360,458	+	apaH	Sama_2821	0.80	-1.7
3,360,518	+	apaH	Sama_2821	0.87	-0.5
3,360,519	-	apaH	Sama_2821	0.87	-1.7
3,360,530	+	apaH	Sama_2821	0.88	+0.3
3,360,530	+	apaH	Sama_2821	0.88	-0.9
3,360,531	-	apaH	Sama_2821	0.89	+0.1
3,360,532	+	apaH	Sama_2821	0.89	-1.9
3,360,532	+	apaH	Sama_2821	0.89	+0.3
3,360,533	-	apaH	Sama_2821	0.89	-0.1
3,360,617	-				+0.1
3,360,622	-				+0.9
3,360,632	+				+1.8
3,360,633	-				+0.3
3,360,651	+				-0.7
3,360,652	-				+0.1
3,360,680	-				-1.0
3,360,727	+				-2.8
3,360,727	+				+1.1
3,360,728	-				-0.9
3,360,792	+				+0.5
3,360,792	+				+1.1
3,360,793	-				-1.3
3,360,793	-				-0.5
3,360,793	-				+2.4
3,360,862	+				-1.0
3,360,862	+				+0.7
3,360,862	+				+0.0
3,360,862	+				+0.4
3,360,863	-				-0.8
3,361,015	+		Sama_2822	0.14	+0.0
3,361,015	+		Sama_2822	0.14	+0.1
3,361,048	+		Sama_2822	0.16	-1.9
3,361,049	-		Sama_2822	0.16	-1.0
3,361,066	+		Sama_2822	0.17	+0.3
3,361,102	+		Sama_2822	0.18	-1.0
3,361,105	+		Sama_2822	0.19	+1.5
3,361,105	+		Sama_2822	0.19	-0.2
3,361,105	+		Sama_2822	0.19	+0.4
3,361,105	+		Sama_2822	0.19	-1.0
3,361,105	+		Sama_2822	0.19	-0.8
3,361,105	+		Sama_2822	0.19	-0.4
3,361,106	-		Sama_2822	0.19	+0.3
3,361,106	-		Sama_2822	0.19	-0.5
3,361,120	+		Sama_2822	0.19	-0.1
3,361,120	+		Sama_2822	0.19	-0.8
3,361,120	+		Sama_2822	0.19	+0.4
3,361,284	+		Sama_2822	0.27	+0.1
3,361,284	+		Sama_2822	0.27	+0.5
3,361,284	+		Sama_2822	0.27	+0.0
3,361,284	+		Sama_2822	0.27	-2.0
3,361,284	+		Sama_2822	0.27	-0.3
3,361,284	+		Sama_2822	0.27	+0.5
3,361,284	+		Sama_2822	0.27	-0.8
3,361,285	-		Sama_2822	0.28	-0.5
3,361,285	-		Sama_2822	0.28	+1.8
3,361,285	-		Sama_2822	0.28	-0.9
3,361,288	+		Sama_2822	0.28	-1.7
3,361,288	+		Sama_2822	0.28	-0.7
3,361,289	-		Sama_2822	0.28	-0.2
3,361,289	-		Sama_2822	0.28	-0.7
3,361,289	-		Sama_2822	0.28	-0.4
3,361,289	-		Sama_2822	0.28	+0.3
3,361,303	+		Sama_2822	0.28	-0.5
3,361,304	-		Sama_2822	0.28	+1.3
3,361,304	-		Sama_2822	0.28	-0.3
3,361,320	-		Sama_2822	0.29	+0.4
3,361,352	+		Sama_2822	0.31	-1.4
3,361,352	+		Sama_2822	0.31	+1.5
3,361,352	+		Sama_2822	0.31	+0.5
3,361,352	+		Sama_2822	0.31	+1.5
3,361,352	+		Sama_2822	0.31	-2.1
3,361,352	+		Sama_2822	0.31	-0.5
3,361,353	-		Sama_2822	0.31	-0.8
3,361,353	-		Sama_2822	0.31	-1.1
3,361,353	-		Sama_2822	0.31	-0.2
3,361,379	+		Sama_2822	0.32	-1.9
3,361,379	+		Sama_2822	0.32	+0.6
3,361,379	+		Sama_2822	0.32	-1.7
3,361,379	+		Sama_2822	0.32	+1.0
3,361,379	+		Sama_2822	0.32	-0.3
3,361,379	+		Sama_2822	0.32	+0.4
3,361,379	+		Sama_2822	0.32	-0.2
3,361,380	-		Sama_2822	0.32	-0.1
3,361,380	-		Sama_2822	0.32	-0.5
3,361,380	-		Sama_2822	0.32	+0.5
3,361,380	-		Sama_2822	0.32	-0.8
3,361,380	-		Sama_2822	0.32	-0.7
3,361,380	-		Sama_2822	0.32	-0.1
3,361,380	-		Sama_2822	0.32	+0.5
3,361,381	+		Sama_2822	0.32	+0.8
3,361,381	+		Sama_2822	0.32	+0.5
3,361,381	+		Sama_2822	0.32	-1.1
3,361,381	+		Sama_2822	0.32	+0.9
3,361,382	-		Sama_2822	0.32	+3.5
3,361,382	-		Sama_2822	0.32	+1.6
3,361,382	-		Sama_2822	0.32	+1.8
3,361,382	-		Sama_2822	0.32	-0.4
3,361,382	-		Sama_2822	0.32	-0.8
3,361,412	+		Sama_2822	0.34	-0.0
3,361,412	+		Sama_2822	0.34	-0.4
3,361,413	-		Sama_2822	0.34	+1.3
3,361,413	-		Sama_2822	0.34	-0.4
3,361,439	-		Sama_2822	0.35	+1.0
3,361,539	+		Sama_2822	0.40	-0.9
3,361,539	+		Sama_2822	0.40	-0.1
3,361,546	+		Sama_2822	0.40	+0.5
3,361,546	+		Sama_2822	0.40	+0.1
3,361,546	+		Sama_2822	0.40	+0.3
3,361,600	+		Sama_2822	0.43	-1.5
3,361,600	+		Sama_2822	0.43	+0.0
3,361,601	-		Sama_2822	0.43	+0.8