Strain Fitness in Shewanella amazonensis SB2B around Sama_2783

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
3,325,112	+		Sama_2782	0.56	-0.5
3,325,112	+		Sama_2782	0.56	+1.5
3,325,113	-		Sama_2782	0.56	-0.9
3,325,113	-		Sama_2782	0.56	+0.5
3,325,156	+		Sama_2782	0.61	-0.3
3,325,172	-		Sama_2782	0.62	+1.5
3,325,172	-		Sama_2782	0.62	-0.7
3,325,172	-		Sama_2782	0.62	-1.1
3,325,172	-		Sama_2782	0.62	-1.1
3,325,300	+		Sama_2782	0.76	+0.5
3,325,301	-		Sama_2782	0.76	-0.9
3,325,301	-		Sama_2782	0.76	+3.1
3,325,301	-		Sama_2782	0.76	+0.8
3,325,330	-		Sama_2782	0.79	-2.2
3,325,330	-		Sama_2782	0.79	-0.1
3,325,330	-		Sama_2782	0.79	+1.5
3,325,422	+		Sama_2782	0.89	+0.0
3,325,423	-		Sama_2782	0.89	-1.4
3,325,437	-				+0.3
3,325,437	-				-0.5
3,325,437	-				+1.6
3,325,477	-				+0.5
3,325,485	+				+0.6
3,325,496	+				+0.8
3,325,497	-				-1.2
3,325,508	+				+0.3
3,325,508	+				-0.7
3,325,508	+				+0.9
3,325,509	-				+0.9
3,325,509	-				-0.5
3,325,521	-				+2.1
3,325,521	-				-0.1
3,325,521	-				-0.4
3,325,534	-				-2.1
3,325,534	-				+0.3
3,325,566	-				-0.1
3,325,609	+				-0.5
3,325,617	+				-0.4
3,325,622	+				-0.2
3,325,665	+				-0.7
3,325,681	-				-0.5
3,325,687	+				+0.4
3,325,687	+				-1.8
3,325,731	+				+0.3
3,325,731	+				-0.4
3,325,732	-				+0.5
3,325,737	+				-1.0
3,325,738	-				-1.2
3,325,770	-				-0.2
3,325,802	+				-0.1
3,325,802	+				-1.2
3,325,818	-				-0.7
3,325,859	+				-0.1
3,325,859	+				-1.0
3,325,860	-				+1.1
3,325,860	-				+0.2
3,325,860	-				+0.5
3,325,880	+				-0.8
3,326,811	+				-0.2
3,326,812	-				-0.1
3,326,827	+				+0.3
3,326,827	+				+0.5
3,326,828	-				+0.5
3,326,828	-				-1.3
3,326,828	-				+0.1
3,326,828	-				+0.2
3,326,828	-				-0.3
3,326,828	-				+1.5
3,326,828	-				-1.1
3,326,829	+				-0.6
3,326,829	+				+5.5
3,326,829	+				+1.3
3,326,829	+				-0.7
3,326,829	+				+0.3
3,326,829	+				+1.1
3,326,829	+				+0.8
3,326,829	+				-1.1
3,326,830	-				+0.9
3,326,830	-				-0.5
3,326,830	-				+0.4
3,326,830	-				-0.7
3,326,830	-				-0.5
3,326,911	+				-1.5
3,326,911	+				-0.1
3,326,911	+				-0.2
3,326,911	+				-0.5
3,326,912	-				+0.1
3,326,912	-				-0.6
3,326,912	-				-0.9
3,326,949	-				-0.1
3,326,949	-				-1.3
3,327,016	+				-0.1
3,327,016	+				+0.3
3,327,016	+				-0.5
3,327,017	-				-1.1
3,327,076	-				+1.1
3,327,076	-				+0.5
3,327,146	-		Sama_2784	0.19	-0.1
3,327,156	-		Sama_2784	0.22	-1.2
3,327,191	-		Sama_2784	0.29	-0.5
3,327,191	-		Sama_2784	0.29	-2.4
3,327,200	+		Sama_2784	0.31	+0.8
3,327,200	+		Sama_2784	0.31	-0.6
3,327,200	+		Sama_2784	0.31	-1.6
3,327,200	+		Sama_2784	0.31	-1.1
3,327,200	+		Sama_2784	0.31	-1.6
3,327,200	+		Sama_2784	0.31	+0.9
3,327,200	+		Sama_2784	0.31	-1.0
3,327,201	-		Sama_2784	0.31	+0.2
3,327,201	-		Sama_2784	0.31	-1.7
3,327,214	+		Sama_2784	0.34	-0.7
3,327,214	+		Sama_2784	0.34	-0.2
3,327,238	+		Sama_2784	0.39	+0.5
3,327,238	+		Sama_2784	0.39	-2.2
3,327,238	+		Sama_2784	0.39	-0.9
3,327,239	-		Sama_2784	0.39	-0.7
3,327,319	+		Sama_2784	0.56	-0.8
3,327,362	+		Sama_2784	0.65	+0.6
3,327,363	-		Sama_2784	0.65	+1.5
3,327,363	-		Sama_2784	0.65	+0.0
3,327,363	-		Sama_2784	0.65	+0.2
3,327,435	+		Sama_2784	0.80	+0.5
3,327,435	+		Sama_2784	0.80	+0.5
3,327,435	+		Sama_2784	0.80	+1.1
3,327,759	+		Sama_2785	0.24	-1.4
3,327,759	+		Sama_2785	0.24	-0.6
3,327,759	+		Sama_2785	0.24	+1.1
3,327,759	+		Sama_2785	0.24	+0.1
3,327,759	+		Sama_2785	0.24	-1.0
3,327,759	+		Sama_2785	0.24	+0.6
3,327,759	+		Sama_2785	0.24	-0.5
3,327,759	+		Sama_2785	0.24	-1.1
3,327,760	-		Sama_2785	0.24	-1.6
3,327,760	-		Sama_2785	0.24	-0.2
3,327,760	-		Sama_2785	0.24	-1.7
3,327,760	-		Sama_2785	0.24	+0.8