Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuS and Sama_2583 are separated by 95 nucleotides Sama_2583 and Sama_2584 overlap by 1 nucleotides Sama_2584 and Sama_2585 are separated by 1 nucleotides Sama_2585 and Sama_2586 are separated by 72 nucleotides
Sama_2582: leuS - leucyl-tRNA synthetase (RefSeq), at 3,089,606 to 3,092,200
leuS
Sama_2583: Sama_2583 - rare lipoprotein B (RefSeq), at 3,092,296 to 3,092,790
_2583
Sama_2584: Sama_2584 - DNA-directed DNA polymerase (RefSeq), at 3,092,790 to 3,093,818
_2584
Sama_2585: Sama_2585 - nicotinate-nucleotide adenylyltransferase (RefSeq), at 3,093,820 to 3,094,470
_2585
Sama_2586: Sama_2586 - iojap domain-containing protein (RefSeq), at 3,094,543 to 3,094,869
_2586
Position (kb)
3092
3093
3094 Strain fitness (log2 ratio)
-1
0
1 at 3092.205 kb on + strand at 3092.271 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.819 kb on + strand at 3093.820 kb on - strand at 3093.825 kb on + strand at 3093.849 kb on + strand at 3094.499 kb on - strand at 3094.534 kb on + strand at 3094.578 kb on + strand, within Sama_2586 at 3094.593 kb on + strand, within Sama_2586 at 3094.593 kb on + strand, within Sama_2586 at 3094.613 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.648 kb on + strand, within Sama_2586 at 3094.737 kb on + strand, within Sama_2586 at 3094.737 kb on + strand, within Sama_2586
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 3,092,205 + -0.6 3,092,271 + +0.6 3,093,819 + +1.6 3,093,819 + +0.6 3,093,819 + -1.2 3,093,819 + +0.1 3,093,819 + +0.8 3,093,820 - +0.3 3,093,825 + -0.1 3,093,849 + +0.3 3,094,499 - +0.9 3,094,534 + -0.3 3,094,578 + Sama_2586 0.11 +0.1 3,094,593 + Sama_2586 0.15 +0.6 3,094,593 + Sama_2586 0.15 +0.7 3,094,613 + Sama_2586 0.21 -0.0 3,094,648 + Sama_2586 0.32 +0.6 3,094,648 + Sama_2586 0.32 +0.3 3,094,648 + Sama_2586 0.32 +1.6 3,094,648 + Sama_2586 0.32 -1.4 3,094,648 + Sama_2586 0.32 +0.5 3,094,737 + Sama_2586 0.59 -0.6 3,094,737 + Sama_2586 0.59 +0.7
Or see this region's nucleotide sequence