Strain Fitness in Shewanella amazonensis SB2B around Sama_2479

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,980,998	+				+2.2
2,980,999	-				-1.8
2,980,999	-				-1.3
2,981,002	+				-0.5
2,981,003	-				-0.5
2,981,208	+		Sama_2478	0.18	-0.5
2,981,208	+		Sama_2478	0.18	-0.6
2,981,219	+		Sama_2478	0.19	-2.1
2,981,219	+		Sama_2478	0.19	+0.0
2,981,219	+		Sama_2478	0.19	+0.7
2,981,220	-		Sama_2478	0.19	-2.6
2,981,236	+		Sama_2478	0.21	+1.0
2,981,236	+		Sama_2478	0.21	-1.3
2,981,236	+		Sama_2478	0.21	+1.0
2,981,236	+		Sama_2478	0.21	-0.6
2,981,236	+		Sama_2478	0.21	+0.5
2,981,236	+		Sama_2478	0.21	+0.6
2,981,236	+		Sama_2478	0.21	-1.2
2,981,263	+		Sama_2478	0.24	-0.2
2,981,263	+		Sama_2478	0.24	-1.3
2,981,263	+		Sama_2478	0.24	+0.8
2,981,263	+		Sama_2478	0.24	-1.8
2,981,264	-		Sama_2478	0.25	-0.5
2,981,277	-		Sama_2478	0.26	+0.2
2,981,277	-		Sama_2478	0.26	+0.8
2,981,288	+		Sama_2478	0.27	-0.6
2,981,288	+		Sama_2478	0.27	-1.3
2,981,299	+		Sama_2478	0.29	-1.6
2,981,299	+		Sama_2478	0.29	-0.6
2,981,299	+		Sama_2478	0.29	-0.1
2,981,300	-		Sama_2478	0.29	+0.8
2,981,300	-		Sama_2478	0.29	-0.2
2,981,342	+		Sama_2478	0.34	-0.1
2,981,342	+		Sama_2478	0.34	-0.3
2,981,343	-		Sama_2478	0.34	-1.4
2,981,382	+		Sama_2478	0.39	+1.2
2,981,382	+		Sama_2478	0.39	-1.9
2,981,382	+		Sama_2478	0.39	-0.6
2,981,382	+		Sama_2478	0.39	+0.0
2,981,383	-		Sama_2478	0.39	+1.1
2,981,383	-		Sama_2478	0.39	-0.5
2,981,414	+		Sama_2478	0.43	-1.0
2,981,529	-		Sama_2478	0.57	-0.2
2,981,555	+		Sama_2478	0.60	+2.8
2,981,557	+		Sama_2478	0.60	-0.8
2,981,557	+		Sama_2478	0.60	+1.2
2,981,557	+		Sama_2478	0.60	-0.2
2,981,557	+		Sama_2478	0.60	-0.3
2,981,557	+		Sama_2478	0.60	+1.5
2,981,561	+		Sama_2478	0.61	-1.1
2,981,561	+		Sama_2478	0.61	-2.0
2,981,561	+		Sama_2478	0.61	-0.5
2,981,561	+		Sama_2478	0.61	-0.7
2,981,567	+		Sama_2478	0.62	+1.2
2,981,567	+		Sama_2478	0.62	-0.8
2,981,567	+		Sama_2478	0.62	+0.4
2,981,568	-		Sama_2478	0.62	-0.6
2,981,595	+		Sama_2478	0.65	-1.7
2,981,707	+		Sama_2478	0.79	+0.0
2,981,708	-		Sama_2478	0.79	-0.2
2,981,708	-		Sama_2478	0.79	+0.1
2,981,843	+				-0.6
2,981,843	+				-1.3
2,981,844	-				-0.3
2,981,895	+				+1.2
2,981,895	+				-0.5
2,981,895	+				+0.2
2,981,895	+				+1.5
2,981,906	+				-2.3
2,981,906	+				-2.2
2,982,436	+				+0.6
2,982,447	+				-0.5
2,982,504	+		Sama_2480	0.11	+1.0
2,982,504	+		Sama_2480	0.11	-1.4
2,982,518	+		Sama_2480	0.16	-0.2
2,982,518	+		Sama_2480	0.16	-0.3
2,982,518	+		Sama_2480	0.16	-1.3
2,982,518	+		Sama_2480	0.16	-0.5
2,982,518	+		Sama_2480	0.16	+0.0
2,982,518	+		Sama_2480	0.16	-0.3
2,982,518	+		Sama_2480	0.16	-0.8
2,982,519	-		Sama_2480	0.16	+0.4
2,982,519	-		Sama_2480	0.16	+0.4
2,982,519	-		Sama_2480	0.16	+0.6
2,982,519	-		Sama_2480	0.16	-1.8
2,982,519	-		Sama_2480	0.16	-0.3
2,982,519	-		Sama_2480	0.16	-1.6
2,982,519	-		Sama_2480	0.16	+1.0
2,982,519	-		Sama_2480	0.16	-0.9
2,982,519	-		Sama_2480	0.16	-0.8
2,982,519	-		Sama_2480	0.16	+0.7
2,982,519	-		Sama_2480	0.16	+0.2
2,982,522	+		Sama_2480	0.17	-0.6
2,982,522	+		Sama_2480	0.17	-0.5
2,982,522	+		Sama_2480	0.17	-0.9
2,982,522	+		Sama_2480	0.17	-0.3
2,982,523	-		Sama_2480	0.17	+0.0
2,982,573	+		Sama_2480	0.35	+2.5
2,982,674	-		Sama_2480	0.70	-2.1
2,982,700	+		Sama_2480	0.79	-1.6
2,982,708	+		Sama_2480	0.82	-0.6
2,982,712	+		Sama_2480	0.83	-1.0
2,982,712	+		Sama_2480	0.83	-0.5
2,982,712	+		Sama_2480	0.83	+1.8
2,982,712	+		Sama_2480	0.83	-0.7
2,982,713	-		Sama_2480	0.83	-0.3
2,982,713	-		Sama_2480	0.83	-0.3
2,982,713	-		Sama_2480	0.83	-0.2
2,982,729	+		Sama_2480	0.89	+0.4
2,982,730	-		Sama_2480	0.89	-2.1
2,982,758	+				-1.2
2,982,778	+				+0.4
2,982,778	+				+0.0
2,982,779	-				-1.0
2,982,791	-				-1.6
2,982,791	-				-0.8
2,982,805	+				-0.9
2,982,805	+				+0.5
2,982,806	-				+2.2
2,982,807	+				+1.0
2,982,807	+				-0.2
2,982,807	+				-1.8
2,982,807	+				-0.4
2,982,807	+				-0.6
2,982,807	+				-1.7
2,982,808	-				+0.2
2,982,808	-				+0.8
2,982,808	-				-0.8
2,982,808	-				-2.4
2,982,811	+				-2.1
2,982,811	+				+2.2
2,982,811	+				-1.2
2,982,811	+				-0.6
2,982,811	+				+0.0
2,982,811	+				+0.4
2,982,811	+				+0.1
2,982,812	-				+0.8
2,982,812	-				-0.9
2,982,812	-				+1.2
2,982,814	-				-0.3
2,982,814	-				-1.6
2,982,836	+				-1.1
2,982,836	+				-0.3
2,982,836	+				+1.0
2,982,874	+				-0.5
2,982,874	+				-0.6
2,982,881	+				+0.7
2,982,922	+		Sama_2481	0.18	-0.3
2,982,923	-		Sama_2481	0.18	+1.3
2,982,923	-		Sama_2481	0.18	+1.4
2,982,942	+		Sama_2481	0.23	+0.0
2,982,942	+		Sama_2481	0.23	-0.2
2,982,942	+		Sama_2481	0.23	-1.5
2,982,942	+		Sama_2481	0.23	-0.3
2,982,942	+		Sama_2481	0.23	+1.4
2,982,942	+		Sama_2481	0.23	-0.3
2,982,942	+		Sama_2481	0.23	+0.8
2,982,942	+		Sama_2481	0.23	+1.0
2,982,943	-		Sama_2481	0.23	+1.8
2,982,943	-		Sama_2481	0.23	+0.2
2,982,944	+		Sama_2481	0.23	+0.5
2,982,944	+		Sama_2481	0.23	-0.5
2,982,944	+		Sama_2481	0.23	+0.9
2,982,945	-		Sama_2481	0.23	-0.8
2,982,945	-		Sama_2481	0.23	+0.4
2,982,945	-		Sama_2481	0.23	+0.5
2,982,959	+		Sama_2481	0.27	-1.3
2,982,990	+		Sama_2481	0.34	+0.1
2,982,990	+		Sama_2481	0.34	-0.5
2,982,991	-		Sama_2481	0.34	+1.1
2,982,991	-		Sama_2481	0.34	+1.2
2,982,997	+		Sama_2481	0.35	+0.3
2,982,997	+		Sama_2481	0.35	-1.3
2,982,998	-		Sama_2481	0.36	-0.1
2,983,012	-		Sama_2481	0.39	+1.1
2,983,012	-		Sama_2481	0.39	-0.5
2,983,012	-		Sama_2481	0.39	+1.8
2,983,021	+		Sama_2481	0.41	+1.0
2,983,028	+		Sama_2481	0.43	-0.7
2,983,029	-		Sama_2481	0.43	-0.3
2,983,029	-		Sama_2481	0.43	+2.1
2,983,158	+		Sama_2481	0.72	+1.0
2,983,158	+		Sama_2481	0.72	+0.4
2,983,158	+		Sama_2481	0.72	+0.7
2,983,159	-		Sama_2481	0.73	+0.0
2,983,159	-		Sama_2481	0.73	+0.1
2,983,159	-		Sama_2481	0.73	-1.2
2,983,162	-		Sama_2481	0.73	-0.1
2,983,162	-		Sama_2481	0.73	+0.6
2,983,162	-		Sama_2481	0.73	+0.5
2,983,162	-		Sama_2481	0.73	+1.8
2,983,162	-		Sama_2481	0.73	+1.2
2,983,217	-		Sama_2481	0.86	+0.8
2,983,347	+				+0.7
2,983,435	+				-0.3
2,983,436	-				+0.8