Strain Fitness in Shewanella amazonensis SB2B around Sama_2399

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,881,511	+		Sama_2397	0.84	-1.4
2,881,512	-		Sama_2397	0.84	-1.0
2,881,543	+		Sama_2397	0.86	+2.9
2,881,544	-		Sama_2397	0.86	+0.8
2,881,544	-		Sama_2397	0.86	-0.6
2,881,568	-		Sama_2397	0.87	-1.3
2,881,598	+		Sama_2397	0.89	+1.3
2,881,598	+		Sama_2397	0.89	-0.1
2,881,598	+		Sama_2397	0.89	-1.7
2,881,599	-		Sama_2397	0.89	+1.6
2,881,627	+				-0.6
2,881,628	-				-1.2
2,881,628	-				-1.0
2,881,628	-				-0.7
2,881,628	-				-0.9
2,881,628	-				+1.8
2,881,686	-				-0.9
2,881,730	+				-1.0
2,881,743	-				-1.7
2,881,765	+				+0.5
2,881,766	-				-0.6
2,881,766	-				-1.9
2,881,767	+				-0.9
2,881,767	+				-1.2
2,881,767	+				-0.8
2,881,767	+				-0.3
2,881,774	+				+1.5
2,881,775	-				+0.5
2,881,846	-				-0.4
2,881,849	+				-1.7
2,881,850	-				-1.1
2,881,850	-				+0.3
2,881,851	+				-0.6
2,881,851	+				-0.3
2,881,851	+				-2.3
2,881,852	-				+0.2
2,881,852	-				+2.1
2,881,852	-				-0.3
2,881,852	-				-0.5
2,881,852	-				+0.5
2,881,852	-				-1.6
2,881,931	-		Sama_2398	0.31	-1.0
2,881,954	-		Sama_2398	0.39	-1.3
2,881,969	+		Sama_2398	0.44	-1.4
2,882,092	+		Sama_2398	0.88	-0.2
2,882,092	+		Sama_2398	0.88	-0.3
2,882,093	-		Sama_2398	0.88	+0.5
2,882,109	-				-1.2
2,882,112	+				-1.7
2,882,112	+				+0.5
2,882,113	-				-0.1
2,882,113	-				-2.0
2,882,128	+				-0.3
2,882,129	-				-0.8
2,882,242	+				+1.2
2,882,242	+				-0.4
2,882,269	-				+0.4
2,882,269	-				+0.1
2,882,351	+		Sama_2399	0.18	-1.5
2,882,355	+		Sama_2399	0.19	-1.7
2,882,356	-		Sama_2399	0.19	-0.9
2,882,356	-		Sama_2399	0.19	-1.3
2,882,356	-		Sama_2399	0.19	-0.9
2,882,376	-		Sama_2399	0.22	-1.0
2,882,571	+		Sama_2399	0.54	-2.6
2,882,571	+		Sama_2399	0.54	+0.3
2,882,572	-		Sama_2399	0.55	-0.9
2,882,595	-		Sama_2399	0.58	+1.6
2,882,676	-		Sama_2399	0.72	-1.3
2,882,697	+		Sama_2399	0.75	-0.5
2,882,808	+				+1.0
2,882,808	+				-1.1
2,882,809	-				+0.3
2,882,809	-				-1.8
2,882,809	-				-0.9
2,882,809	-				+2.9
2,882,833	+				+0.1
2,882,833	+				+1.3
2,882,833	+				+0.1
2,882,833	+				-0.9
2,882,833	+				-0.5
2,882,834	-				-1.8
2,882,834	-				+1.3
2,882,834	-				+1.9
2,882,869	+				-0.6
2,882,870	-				-1.1
2,882,870	-				-1.1
2,882,870	-				+1.9
2,882,870	-				+0.1
2,882,870	-				+1.9
2,882,870	-				+1.9
2,882,870	-				+1.1
2,882,870	-				+0.1
2,882,870	-				-3.0
2,882,870	-				+0.5
2,882,875	+				+0.3
2,882,875	+				-0.6
2,882,875	+				-0.0
2,882,876	-				-0.4
2,882,876	-				+0.3
2,882,876	-				+1.1
2,882,876	-				-0.6
2,882,876	-				-0.0
2,882,876	-				+1.9
2,882,876	-				+1.4
2,882,913	-				-0.3
2,882,913	-				-0.2
2,882,986	-				-0.6
2,882,986	-				-0.7
2,882,998	-				-0.6
2,883,107	+		Sama_2400	0.15	-1.5
2,883,107	+		Sama_2400	0.15	-0.8
2,883,107	+		Sama_2400	0.15	-0.5
2,883,135	+		Sama_2400	0.16	+0.3
2,883,135	+		Sama_2400	0.16	-0.2
2,883,136	-		Sama_2400	0.16	-0.1
2,883,136	-		Sama_2400	0.16	-1.8
2,883,187	+		Sama_2400	0.19	+1.6
2,883,187	+		Sama_2400	0.19	-0.1
2,883,187	+		Sama_2400	0.19	-1.7
2,883,188	-		Sama_2400	0.19	-0.1
2,883,188	-		Sama_2400	0.19	+2.9
2,883,188	-		Sama_2400	0.19	+1.1
2,883,211	-		Sama_2400	0.20	-0.1
2,883,319	-		Sama_2400	0.26	+0.6
2,883,430	+		Sama_2400	0.32	+1.9
2,883,430	+		Sama_2400	0.32	+0.8
2,883,430	+		Sama_2400	0.32	-1.6
2,883,431	-		Sama_2400	0.32	+0.9
2,883,431	-		Sama_2400	0.32	+2.3
2,883,445	-		Sama_2400	0.33	+0.9
2,883,445	-		Sama_2400	0.33	+0.9
2,883,450	+		Sama_2400	0.33	-1.4
2,883,451	-		Sama_2400	0.33	-0.8
2,883,681	-		Sama_2400	0.46	-1.5
2,883,703	+		Sama_2400	0.47	+1.0
2,883,703	+		Sama_2400	0.47	+0.8
2,883,704	-		Sama_2400	0.47	+1.0
2,883,704	-		Sama_2400	0.47	-0.6
2,883,704	-		Sama_2400	0.47	+0.3
2,883,704	-		Sama_2400	0.47	-0.6
2,883,801	+		Sama_2400	0.53	-0.6