Strain Fitness in Shewanella amazonensis SB2B around Sama_2378

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,855,236	+				-1.1
2,855,287	-				-0.3
2,855,293	+				-0.7
2,855,293	+				-0.5
2,855,294	-				+1.5
2,855,294	-				-0.6
2,855,324	-				+1.7
2,855,324	-				+1.6
2,855,334	-				+0.3
2,855,415	+				+2.1
2,855,415	+				+1.9
2,855,419	+				-1.5
2,855,480	+		Sama_2377	0.13	-0.1
2,855,504	+		Sama_2377	0.16	+0.2
2,855,505	-		Sama_2377	0.16	-1.2
2,855,535	-		Sama_2377	0.20	-1.7
2,855,535	-		Sama_2377	0.20	-1.2
2,855,561	+		Sama_2377	0.23	+0.1
2,855,562	-		Sama_2377	0.23	-0.5
2,855,601	+		Sama_2377	0.28	-0.5
2,855,601	+		Sama_2377	0.28	-0.9
2,855,670	-		Sama_2377	0.36	-0.5
2,855,723	-		Sama_2377	0.42	-0.3
2,855,737	+		Sama_2377	0.44	-1.5
2,855,737	+		Sama_2377	0.44	-1.1
2,855,737	+		Sama_2377	0.44	+3.3
2,855,737	+		Sama_2377	0.44	+0.8
2,855,738	-		Sama_2377	0.44	-0.1
2,856,052	+		Sama_2377	0.82	+2.3
2,856,052	+		Sama_2377	0.82	-0.2
2,856,053	-		Sama_2377	0.82	-1.3
2,856,149	-				-0.1
2,856,159	+				+0.9
2,856,160	-				+0.7
2,856,199	+				-1.6
2,856,199	+				-0.8
2,856,199	+				-0.1
2,856,199	+				+1.1
2,856,199	+				-1.6
2,856,199	+				+1.0
2,856,199	+				+1.9
2,856,200	-				-1.2
2,856,200	-				+2.2
2,856,200	-				-1.3
2,856,200	-				-0.1
2,856,219	-				+0.7
2,856,219	-				+2.3
2,856,241	-				+0.1
2,856,286	+		Sama_2378	0.11	-0.1
2,856,286	+		Sama_2378	0.11	-0.7
2,856,358	+		Sama_2378	0.26	-1.3
2,856,359	-		Sama_2378	0.26	-0.2
2,856,371	+		Sama_2378	0.29	-1.5
2,856,383	+		Sama_2378	0.31	-1.4
2,856,384	-		Sama_2378	0.31	-1.0
2,856,384	-		Sama_2378	0.31	+0.3
2,856,384	-		Sama_2378	0.31	+0.5
2,856,452	+		Sama_2378	0.46	-0.6
2,856,453	-		Sama_2378	0.46	-1.5
2,856,479	+		Sama_2378	0.52	+0.4
2,856,480	-		Sama_2378	0.52	+0.7
2,856,517	+		Sama_2378	0.60	-0.9
2,856,540	+		Sama_2378	0.65	-1.8
2,856,540	+		Sama_2378	0.65	-1.2
2,856,541	-		Sama_2378	0.65	+0.3
2,856,541	-		Sama_2378	0.65	+0.1
2,856,541	-		Sama_2378	0.65	-0.3
2,856,541	-		Sama_2378	0.65	-1.4
2,856,542	+		Sama_2378	0.65	+1.1
2,856,542	+		Sama_2378	0.65	-0.6
2,856,542	+		Sama_2378	0.65	+0.9
2,856,542	+		Sama_2378	0.65	-1.0
2,856,542	+		Sama_2378	0.65	-2.0
2,856,543	-		Sama_2378	0.65	-0.9
2,856,543	-		Sama_2378	0.65	+0.4
2,856,543	-		Sama_2378	0.65	-0.6
2,856,543	-		Sama_2378	0.65	-0.6
2,856,543	-		Sama_2378	0.65	-1.8
2,856,543	-		Sama_2378	0.65	-0.1
2,856,543	-		Sama_2378	0.65	+0.3
2,856,543	-		Sama_2378	0.65	+0.0
2,856,544	+		Sama_2378	0.65	+0.5
2,856,554	+		Sama_2378	0.68	+1.3
2,856,587	-		Sama_2378	0.75	-1.8
2,856,618	-		Sama_2378	0.81	+1.3
2,856,618	-		Sama_2378	0.81	+0.1
2,856,618	-		Sama_2378	0.81	-0.8
2,856,618	-		Sama_2378	0.81	+1.6
2,856,648	+		Sama_2378	0.87	+0.1
2,856,648	+		Sama_2378	0.87	+0.3
2,856,648	+		Sama_2378	0.87	+1.3
2,856,648	+		Sama_2378	0.87	-0.3
2,856,649	-		Sama_2378	0.88	-0.2
2,856,649	-		Sama_2378	0.88	+0.7
2,856,649	-		Sama_2378	0.88	-0.1
2,856,745	-				-0.6
2,856,745	-				-0.9
2,856,809	+				+1.3
2,856,809	+				+0.9
2,856,820	+				+1.3
2,856,821	-				-1.7
2,856,822	+				-0.9
2,856,938	-		Sama_2379	0.16	-1.1
2,856,949	+		Sama_2379	0.17	-0.3
2,856,950	-		Sama_2379	0.17	+1.9
2,856,987	+		Sama_2379	0.20	+0.3
2,856,987	+		Sama_2379	0.20	+1.0
2,856,997	+		Sama_2379	0.20	-0.4
2,857,111	+		Sama_2379	0.28	-0.3
2,857,111	+		Sama_2379	0.28	-0.3
2,857,111	+		Sama_2379	0.28	+0.5
2,857,112	-		Sama_2379	0.28	-0.8
2,857,112	-		Sama_2379	0.28	-0.1
2,857,114	+		Sama_2379	0.28	+0.1
2,857,114	+		Sama_2379	0.28	-0.9
2,857,115	-		Sama_2379	0.28	+0.2
2,857,201	+		Sama_2379	0.34	+0.4
2,857,201	+		Sama_2379	0.34	-0.7
2,857,291	+		Sama_2379	0.40	+1.9
2,857,292	-		Sama_2379	0.40	+0.3
2,857,304	+		Sama_2379	0.41	+0.4
2,857,546	-		Sama_2379	0.58	+0.5
2,857,609	+		Sama_2379	0.62	-2.0
2,857,703	+		Sama_2379	0.68	-0.1
2,857,704	-		Sama_2379	0.68	+0.1
2,857,704	-		Sama_2379	0.68	-0.8
2,857,704	-		Sama_2379	0.68	+0.9
2,857,706	-		Sama_2379	0.69	-0.3
2,857,706	-		Sama_2379	0.69	-0.2