Strain Fitness in Shewanella amazonensis SB2B around Sama_2271

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,737,068	+		Sama_2269	0.76	-0.5
2,737,119	+		Sama_2269	0.79	+0.5
2,737,130	+		Sama_2269	0.79	-1.2
2,737,131	-		Sama_2269	0.79	+2.3
2,737,131	-		Sama_2269	0.79	-1.3
2,737,178	+		Sama_2269	0.82	+0.2
2,737,179	-		Sama_2269	0.82	-0.3
2,737,179	-		Sama_2269	0.82	-1.0
2,737,231	+		Sama_2269	0.85	-0.5
2,737,276	+		Sama_2269	0.87	+0.2
2,737,276	+		Sama_2269	0.87	+0.4
2,737,276	+		Sama_2269	0.87	-0.2
2,737,388	+				-0.2
2,737,389	-				-1.5
2,737,440	+				-0.2
2,737,441	-				+0.0
2,737,441	-				-0.0
2,737,459	+				-1.2
2,737,525	-				-0.3
2,737,525	-				-0.5
2,737,539	-				+0.8
2,737,539	-				+0.2
2,737,550	+		Sama_2270	0.10	+1.2
2,737,550	+		Sama_2270	0.10	+1.4
2,737,551	-		Sama_2270	0.11	+0.6
2,737,601	+		Sama_2270	0.27	+0.8
2,737,601	+		Sama_2270	0.27	+0.4
2,737,602	-		Sama_2270	0.27	-0.3
2,737,602	-		Sama_2270	0.27	-1.4
2,737,720	+		Sama_2270	0.66	-0.4
2,737,720	+		Sama_2270	0.66	-0.5
2,737,720	+		Sama_2270	0.66	+2.0
2,737,721	-		Sama_2270	0.67	-0.3
2,737,721	-		Sama_2270	0.67	-0.5
2,737,721	-		Sama_2270	0.67	-0.2
2,737,721	-		Sama_2270	0.67	-1.6
2,737,724	+		Sama_2270	0.68	-1.2
2,737,725	-		Sama_2270	0.68	+1.2
2,737,725	-		Sama_2270	0.68	+0.1
2,737,725	-		Sama_2270	0.68	+0.2
2,737,753	+		Sama_2270	0.77	-0.8
2,737,753	+		Sama_2270	0.77	+0.4
2,737,753	+		Sama_2270	0.77	+1.9
2,737,753	+		Sama_2270	0.77	-0.1
2,737,805	+				-0.5
2,737,805	+				-0.3
2,737,805	+				-1.3
2,737,806	-				+1.6
2,737,858	+				-0.8
2,737,858	+				-0.7
2,737,877	+				+1.8
2,737,878	-				+0.5
2,737,878	-				-0.6
2,737,934	-				+0.8
2,738,048	-		Sama_2271	0.29	-0.9
2,738,048	-		Sama_2271	0.29	+0.2
2,738,145	+		Sama_2271	0.53	+0.8
2,738,146	-		Sama_2271	0.53	-0.5
2,738,211	-		Sama_2271	0.69	-1.0
2,738,211	-		Sama_2271	0.69	-0.3
2,738,269	+		Sama_2271	0.83	-0.5
2,738,269	+		Sama_2271	0.83	-0.2
2,738,270	-		Sama_2271	0.83	-0.6
2,738,271	+		Sama_2271	0.84	-0.5
2,738,271	+		Sama_2271	0.84	+0.5
2,738,272	-		Sama_2271	0.84	+0.2
2,738,272	-		Sama_2271	0.84	-1.3
2,738,272	-		Sama_2271	0.84	+1.2
2,738,272	-		Sama_2271	0.84	+0.4
2,738,272	-		Sama_2271	0.84	-1.6
2,738,272	-		Sama_2271	0.84	-1.0
2,738,299	+				-0.6
2,738,299	+				-1.1
2,738,300	-				-1.2
2,738,300	-				+0.0
2,738,300	-				-2.2
2,738,300	-				+1.2
2,738,344	+				+1.5
2,738,363	+				-1.3
2,738,400	-				-0.3
2,738,400	-				-0.6
2,738,400	-				+0.0
2,738,490	-		Sama_2272	0.17	-0.9
2,738,505	-		Sama_2272	0.20	-0.2
2,738,505	-		Sama_2272	0.20	-0.2
2,738,505	-		Sama_2272	0.20	-1.6
2,738,567	-		Sama_2272	0.33	-0.8
2,738,721	-		Sama_2272	0.64	+0.8
2,738,721	-		Sama_2272	0.64	+1.2
2,738,721	-		Sama_2272	0.64	-1.0
2,738,724	-		Sama_2272	0.64	+0.7
2,738,845	-		Sama_2272	0.89	-0.5
2,738,845	-		Sama_2272	0.89	-1.0
2,738,845	-		Sama_2272	0.89	-0.6
2,738,900	+				+0.5
2,738,900	+				+0.8
2,738,901	-				-0.1
2,738,901	-				+0.7
2,738,901	-				-0.9
2,738,905	-				+0.4
2,738,905	-				-1.3
2,738,905	-				-0.8
2,738,905	-				+1.5
2,738,905	-				-1.3
2,738,905	-				+0.1
2,738,905	-				-0.8
2,738,914	-				-0.2
2,738,914	-				-0.9
2,738,914	-				-2.2
2,738,917	-				+0.2
2,738,917	-				-1.1
2,738,917	-				+0.4
2,738,917	-				-0.6
2,738,917	-				+0.5
2,738,933	-				-1.0
2,738,991	-				+0.4
2,738,999	-				+0.2
2,738,999	-				+0.2
2,739,103	-		Sama_2273	0.18	-1.1
2,739,116	-		Sama_2273	0.19	-1.1
2,739,119	-		Sama_2273	0.20	-1.1
2,739,132	-		Sama_2273	0.21	+1.2
2,739,132	-		Sama_2273	0.21	-0.1
2,739,132	-		Sama_2273	0.21	-1.1
2,739,162	-		Sama_2273	0.24	+0.5
2,739,258	+		Sama_2273	0.32	-0.2
2,739,284	-		Sama_2273	0.35	+1.4
2,739,333	+		Sama_2273	0.39	+0.7
2,739,334	-		Sama_2273	0.39	+0.4