Strain Fitness in Shewanella amazonensis SB2B around Sama_2253
Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,715,369 | - | +4.0 | |||
2,715,445 | - | +0.0 | |||
2,715,450 | - | +0.2 | |||
2,715,662 | - | Sama_2252 | 0.43 | +0.7 | |
2,715,684 | + | Sama_2252 | 0.46 | +3.0 | |
2,715,907 | - | Sama_2252 | 0.82 | -0.3 | |
2,716,003 | - | -0.3 | |||
2,716,006 | - | +1.9 | |||
2,716,011 | - | +0.3 | |||
2,716,014 | - | +1.9 | |||
2,716,121 | - | +3.3 | |||
2,716,227 | - | Sama_2253 | 0.18 | +4.1 | |
2,716,227 | - | Sama_2253 | 0.18 | +4.0 | |
2,716,272 | - | Sama_2253 | 0.22 | +3.5 | |
2,716,272 | - | Sama_2253 | 0.22 | +4.3 | |
2,716,347 | - | Sama_2253 | 0.28 | +4.7 | |
2,716,456 | - | Sama_2253 | 0.38 | +1.4 | |
2,716,722 | - | Sama_2253 | 0.61 | +0.5 | |
2,716,722 | - | Sama_2253 | 0.61 | +4.6 | |
2,716,988 | - | Sama_2253 | 0.83 | +0.2 | |
2,717,070 | - | +4.0 | |||
2,717,151 | + | +6.0 | |||
2,717,152 | - | +4.5 |
Or see this region's nucleotide sequence