Strain Fitness in Shewanella amazonensis SB2B around Sama_2105

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,547,980	+				-0.4
2,547,995	-				-1.1
2,548,055	+		Sama_2102	0.23	-0.0
2,548,056	-		Sama_2102	0.24	+0.7
2,548,056	-		Sama_2102	0.24	+1.1
2,548,094	-		Sama_2102	0.43	+0.7
2,548,094	-		Sama_2102	0.43	+0.8
2,548,094	-		Sama_2102	0.43	-1.2
2,548,145	-		Sama_2102	0.69	-0.5
2,548,194	-				-0.9
2,548,194	-				-1.4
2,548,198	+				-0.5
2,548,199	-				+1.1
2,548,220	+				-0.1
2,548,221	-				-0.3
2,548,225	+				+2.7
2,548,225	+				-1.7
2,548,226	-				+1.2
2,548,226	-				+0.1
2,548,226	-				-0.3
2,548,277	+		Sama_2103	0.21	-0.5
2,548,277	+		Sama_2103	0.21	-1.1
2,548,277	+		Sama_2103	0.21	+0.1
2,548,278	-		Sama_2103	0.21	-0.9
2,548,278	-		Sama_2103	0.21	+4.2
2,548,370	+		Sama_2103	0.48	-1.7
2,548,371	-		Sama_2103	0.48	+0.3
2,548,371	-		Sama_2103	0.48	+0.1
2,548,427	+		Sama_2103	0.65	-1.5
2,548,536	-				+1.4
2,548,558	-				-0.8
2,548,643	+		Sama_2104	0.25	-0.5
2,548,646	-		Sama_2104	0.26	+0.3
2,548,646	-		Sama_2104	0.26	+1.7
2,548,699	-		Sama_2104	0.41	-0.0
2,548,736	+		Sama_2104	0.52	+1.5
2,548,736	+		Sama_2104	0.52	+1.1
2,548,800	+		Sama_2104	0.70	+0.2
2,548,801	-		Sama_2104	0.70	-0.9
2,548,801	-		Sama_2104	0.70	+2.1
2,548,878	+				-0.5
2,548,879	-				+1.2
2,548,879	-				+0.9
2,548,882	+				+0.5
2,548,883	-				+0.6
2,548,883	-				-0.1
2,548,889	-				-0.5
2,548,892	+				+0.7
2,548,892	+				-0.3
2,548,931	+				-0.4
2,548,931	+				+0.1
2,548,969	+				+1.3
2,549,077	-		Sama_2105	0.15	-0.7
2,549,115	+		Sama_2105	0.21	+1.5
2,549,116	-		Sama_2105	0.21	+1.7
2,549,124	+		Sama_2105	0.22	+0.2
2,549,125	-		Sama_2105	0.22	-0.8
2,549,150	+		Sama_2105	0.26	+0.8
2,549,150	+		Sama_2105	0.26	-0.1
2,549,150	+		Sama_2105	0.26	-1.0
2,549,150	+		Sama_2105	0.26	+0.1
2,549,151	-		Sama_2105	0.26	+0.8
2,549,151	-		Sama_2105	0.26	+1.3
2,549,151	-		Sama_2105	0.26	+1.9
2,549,151	-		Sama_2105	0.26	+0.2
2,549,151	-		Sama_2105	0.26	+0.2
2,549,151	-		Sama_2105	0.26	+1.0
2,549,151	-		Sama_2105	0.26	+2.8
2,549,151	-		Sama_2105	0.26	+1.3
2,549,151	-		Sama_2105	0.26	+1.9
2,549,151	-		Sama_2105	0.26	-1.7
2,549,151	-		Sama_2105	0.26	-0.0
2,549,151	-		Sama_2105	0.26	-0.7
2,549,151	-		Sama_2105	0.26	+0.3
2,549,352	+		Sama_2105	0.54	+1.1
2,549,374	-		Sama_2105	0.58	+1.3
2,549,471	+		Sama_2105	0.71	+1.1
2,549,471	+		Sama_2105	0.71	+2.7
2,549,541	+		Sama_2105	0.81	+2.7
2,549,667	-				-1.3
2,549,674	+				+0.1
2,549,674	+				+0.5
2,549,675	-				-0.7
2,549,675	-				-0.0
2,549,715	-				+0.1
2,549,715	-				+0.1
2,549,715	-				+2.7
2,549,766	+				+0.9
2,549,766	+				-0.7
2,549,766	+				-0.3
2,549,767	-				+0.3
2,549,767	-				-0.9
2,549,767	-				+0.8
2,549,809	+		Sama_2106	0.15	+0.1
2,549,810	-		Sama_2106	0.15	-2.4
2,549,828	-		Sama_2106	0.20	-0.0
2,549,876	-		Sama_2106	0.31	+1.4
2,549,925	+		Sama_2106	0.42	+0.1
2,549,925	+		Sama_2106	0.42	+0.1
2,549,926	-		Sama_2106	0.42	+1.0
2,549,926	-		Sama_2106	0.42	+1.8
2,549,926	-		Sama_2106	0.42	-0.9
2,549,926	-		Sama_2106	0.42	-0.2
2,549,926	-		Sama_2106	0.42	+0.4
2,549,926	-		Sama_2106	0.42	-0.0
2,549,926	-		Sama_2106	0.42	-0.7
2,549,941	-		Sama_2106	0.46	+0.1
2,549,941	-		Sama_2106	0.46	-1.0
2,549,945	+		Sama_2106	0.47	+0.5
2,549,970	+		Sama_2106	0.53	-0.7
2,549,970	+		Sama_2106	0.53	+0.5
2,549,970	+		Sama_2106	0.53	+0.3
2,549,970	+		Sama_2106	0.53	+1.7
2,549,970	+		Sama_2106	0.53	+0.3
2,549,970	+		Sama_2106	0.53	+0.1
2,549,970	+		Sama_2106	0.53	+1.3
2,549,971	-		Sama_2106	0.53	-0.3
2,549,971	-		Sama_2106	0.53	+0.2
2,549,990	-		Sama_2106	0.57	+0.3
2,549,990	-		Sama_2106	0.57	-0.5
2,550,164	+				-0.7
2,550,164	+				-1.8
2,550,164	+				+0.3
2,550,164	+				+0.3
2,550,164	+				+0.3
2,550,188	+				-0.7
2,550,188	+				+0.7
2,550,189	-				+1.1
2,550,315	+				-0.9
2,550,316	-				+0.2
2,550,424	-				-0.3
2,550,520	-				-1.1
2,550,520	-				+1.3
2,550,542	-		Sama_2107	0.12	+0.7
2,550,558	-		Sama_2107	0.13	-0.1
2,550,670	+		Sama_2107	0.25	+0.3