Strain Fitness in Shewanella amazonensis SB2B around Sama_2100

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,543,345	-				+2.2
2,543,490	-		Sama_2099	0.24	-0.5
2,543,512	-		Sama_2099	0.27	-0.0
2,543,604	+		Sama_2099	0.39	-0.6
2,543,605	-		Sama_2099	0.39	-0.7
2,543,605	-		Sama_2099	0.39	+1.9
2,543,605	-		Sama_2099	0.39	-0.1
2,543,619	-		Sama_2099	0.41	-0.4
2,543,671	-		Sama_2099	0.48	-0.9
2,543,681	+		Sama_2099	0.49	+0.7
2,543,823	+		Sama_2099	0.68	-1.0
2,543,823	+		Sama_2099	0.68	+1.2
2,543,824	-		Sama_2099	0.68	+0.1
2,543,824	-		Sama_2099	0.68	+0.9
2,543,910	-		Sama_2099	0.80	+0.3
2,543,912	+		Sama_2099	0.80	-1.0
2,543,913	-		Sama_2099	0.80	-0.3
2,543,959	+		Sama_2099	0.86	-0.1
2,543,960	-		Sama_2099	0.87	-1.1
2,543,965	+		Sama_2099	0.87	-0.2
2,543,966	-		Sama_2099	0.87	-0.7
2,543,966	-		Sama_2099	0.87	-0.9
2,543,995	+				-0.7
2,543,996	-				+1.3
2,543,996	-				+2.2
2,543,996	-				-0.3
2,544,029	+				-0.9
2,544,029	+				-1.6
2,544,029	+				+0.3
2,544,030	-				-1.2
2,544,030	-				+0.3
2,544,030	-				+0.3
2,544,030	-				-1.2
2,544,137	+				+2.7
2,544,137	+				+0.5
2,544,137	+				+0.5
2,544,138	-				-0.8
2,544,157	+				-1.5
2,544,158	-				+0.7
2,544,158	-				+1.1
2,544,181	+				+1.2
2,544,181	+				-1.9
2,544,181	+				-1.9
2,544,182	-				-0.2
2,544,182	-				+2.1
2,544,182	-				-0.7
2,544,182	-				-1.2
2,544,182	-				+0.7
2,544,186	-				-1.7
2,544,202	+				+0.7
2,544,203	-				-0.5
2,544,234	+				+0.3
2,544,246	-				+0.4
2,544,449	-		Sama_2100	0.11	+0.5
2,544,466	-		Sama_2100	0.13	-0.7
2,544,529	+		Sama_2100	0.16	+0.1
2,544,529	+		Sama_2100	0.16	-1.1
2,544,626	+		Sama_2100	0.22	-0.5
2,544,632	+		Sama_2100	0.23	-0.1
2,544,632	+		Sama_2100	0.23	-0.3
2,544,633	-		Sama_2100	0.23	-1.7
2,544,633	-		Sama_2100	0.23	-1.8
2,544,633	-		Sama_2100	0.23	-1.0
2,544,633	-		Sama_2100	0.23	-0.1
2,544,633	-		Sama_2100	0.23	-1.8
2,544,633	-		Sama_2100	0.23	-0.9
2,544,656	+		Sama_2100	0.24	-0.2
2,544,656	+		Sama_2100	0.24	+0.7
2,544,656	+		Sama_2100	0.24	-1.8
2,544,657	-		Sama_2100	0.24	-1.1
2,544,657	-		Sama_2100	0.24	-0.8
2,544,657	-		Sama_2100	0.24	-1.9
2,544,657	-		Sama_2100	0.24	+1.2
2,544,669	+		Sama_2100	0.25	-0.5
2,544,669	+		Sama_2100	0.25	-0.1
2,544,682	+		Sama_2100	0.26	-0.4
2,544,682	+		Sama_2100	0.26	-1.2
2,544,683	-		Sama_2100	0.26	+0.1
2,544,698	-		Sama_2100	0.27	-0.3
2,544,711	+		Sama_2100	0.28	+1.9
2,544,711	+		Sama_2100	0.28	+0.1
2,544,712	-		Sama_2100	0.28	+0.7
2,544,712	-		Sama_2100	0.28	-0.4
2,544,799	+		Sama_2100	0.33	-0.8
2,544,799	+		Sama_2100	0.33	-0.8
2,544,799	+		Sama_2100	0.33	-0.5
2,544,799	+		Sama_2100	0.33	-2.5
2,544,800	-		Sama_2100	0.33	+0.7
2,544,800	-		Sama_2100	0.33	+1.4
2,544,800	-		Sama_2100	0.33	-0.9
2,544,800	-		Sama_2100	0.33	-1.4
2,544,800	-		Sama_2100	0.33	+1.7
2,544,800	-		Sama_2100	0.33	+0.7
2,544,800	-		Sama_2100	0.33	-1.7
2,544,800	-		Sama_2100	0.33	-0.1
2,544,800	-		Sama_2100	0.33	-0.1
2,544,800	-		Sama_2100	0.33	-1.2
2,544,802	+		Sama_2100	0.33	+1.5
2,544,803	-		Sama_2100	0.33	+3.7
2,544,889	+		Sama_2100	0.38	-1.2
2,544,906	-		Sama_2100	0.40	-0.3
2,545,038	+		Sama_2100	0.48	-1.6
2,545,039	-		Sama_2100	0.48	-0.3
2,545,108	-		Sama_2100	0.52	+2.7
2,545,135	+		Sama_2100	0.54	-0.7
2,545,135	+		Sama_2100	0.54	-0.1
2,545,135	+		Sama_2100	0.54	+1.2
2,545,136	-		Sama_2100	0.54	-0.8
2,545,136	-		Sama_2100	0.54	-1.4
2,545,136	-		Sama_2100	0.54	+1.1
2,545,137	+		Sama_2100	0.54	-0.5
2,545,137	+		Sama_2100	0.54	-1.0
2,545,137	+		Sama_2100	0.54	+0.1
2,545,138	-		Sama_2100	0.54	-0.8
2,545,182	+		Sama_2100	0.56	-0.5
2,545,183	-		Sama_2100	0.57	-1.5
2,545,183	-		Sama_2100	0.57	+0.7
2,545,183	-		Sama_2100	0.57	-0.7
2,545,183	-		Sama_2100	0.57	-1.4
2,545,210	-		Sama_2100	0.58	+0.1
2,545,247	-		Sama_2100	0.60	-2.0
2,545,332	+		Sama_2100	0.66	+0.9
2,545,333	-		Sama_2100	0.66	-0.7
2,545,356	+		Sama_2100	0.67	-0.9
2,545,356	+		Sama_2100	0.67	-0.1
2,545,357	-		Sama_2100	0.67	+1.7
2,545,362	+		Sama_2100	0.68	+0.1
2,545,363	-		Sama_2100	0.68	-0.1
2,545,399	+		Sama_2100	0.70	-2.7
2,545,399	+		Sama_2100	0.70	+2.7
2,545,400	-		Sama_2100	0.70	-2.5
2,545,400	-		Sama_2100	0.70	-1.2
2,545,400	-		Sama_2100	0.70	-0.5
2,545,402	+		Sama_2100	0.70	-1.5
2,545,402	+		Sama_2100	0.70	-1.7
2,545,402	+		Sama_2100	0.70	+0.6
2,545,402	+		Sama_2100	0.70	+0.7
2,545,402	+		Sama_2100	0.70	-1.9
2,545,403	-		Sama_2100	0.70	+1.3
2,545,492	-		Sama_2100	0.76	+0.1
2,545,492	-		Sama_2100	0.76	-0.3
2,545,528	+		Sama_2100	0.78	+0.3
2,545,528	+		Sama_2100	0.78	+3.0
2,545,529	-		Sama_2100	0.78	-0.6
2,545,529	-		Sama_2100	0.78	-0.7
2,545,689	+		Sama_2100	0.88	+0.3
2,545,690	-		Sama_2100	0.88	-0.5
2,545,693	+		Sama_2100	0.88	+0.8
2,545,693	+		Sama_2100	0.88	-0.1
2,545,693	+		Sama_2100	0.88	-0.1
2,545,693	+		Sama_2100	0.88	-1.9
2,545,693	+		Sama_2100	0.88	-1.1
2,545,693	+		Sama_2100	0.88	+1.3
2,545,694	-		Sama_2100	0.88	-0.1
2,545,694	-		Sama_2100	0.88	+1.1
2,545,694	-		Sama_2100	0.88	-1.0
2,545,694	-		Sama_2100	0.88	-0.1
2,545,694	-		Sama_2100	0.88	+0.3
2,545,694	-		Sama_2100	0.88	-0.8
2,545,694	-		Sama_2100	0.88	+0.3
2,545,694	-		Sama_2100	0.88	+1.1
2,545,694	-		Sama_2100	0.88	-0.3
2,545,694	-		Sama_2100	0.88	-2.2
2,545,695	+		Sama_2100	0.88	-0.9
2,545,695	+		Sama_2100	0.88	-2.0
2,545,695	+		Sama_2100	0.88	-0.9
2,545,695	+		Sama_2100	0.88	-0.3
2,545,695	+		Sama_2100	0.88	-0.3
2,545,695	+		Sama_2100	0.88	-1.3
2,545,696	-		Sama_2100	0.88	-1.4
2,545,696	-		Sama_2100	0.88	+0.9
2,545,696	-		Sama_2100	0.88	+0.5
2,545,696	-		Sama_2100	0.88	+1.1
2,545,729	+				-0.1
2,545,750	+				+0.4
2,545,751	-				+0.3
2,545,769	+				-1.1
2,545,799	-				+1.8
2,545,801	+				-0.3
2,545,801	+				-1.4
2,545,801	+				+1.1
2,545,801	+				-1.1
2,545,801	+				+1.7
2,545,801	+				+0.1
2,545,846	+				-0.7
2,545,846	+				+0.3
2,545,888	+				+2.3
2,545,889	-				-0.9
2,545,965	+				-0.8
2,545,965	+				-0.7
2,545,988	-				+0.9
2,546,010	-				+0.3
2,546,010	-				+1.7
2,546,023	+				+1.4
2,546,094	-				-0.5
2,546,186	-				-1.1
2,546,209	+				-0.2
2,546,209	+				-0.9
2,546,210	-				+0.4
2,546,221	-				+0.5
2,546,221	-				-0.3
2,546,320	+				+0.1
2,546,324	+				-0.5
2,546,325	-				+2.1
2,546,376	+				-1.7
2,546,376	+				+1.1
2,546,376	+				+0.3
2,546,376	+				+0.4
2,546,398	+	asnB	Sama_2101	0.11	+0.9
2,546,421	+	asnB	Sama_2101	0.13	-1.5
2,546,483	+	asnB	Sama_2101	0.16	-0.7
2,546,483	+	asnB	Sama_2101	0.16	-2.4
2,546,484	-	asnB	Sama_2101	0.16	-1.7
2,546,484	-	asnB	Sama_2101	0.16	+0.1
2,546,484	-	asnB	Sama_2101	0.16	-1.2
2,546,484	-	asnB	Sama_2101	0.16	-0.4
2,546,484	-	asnB	Sama_2101	0.16	-0.3
2,546,489	+	asnB	Sama_2101	0.17	+0.1
2,546,583	+	asnB	Sama_2101	0.22	-0.2
2,546,584	-	asnB	Sama_2101	0.22	-0.1
2,546,584	-	asnB	Sama_2101	0.22	-1.5
2,546,589	-	asnB	Sama_2101	0.23	+1.7
2,546,609	+	asnB	Sama_2101	0.24	+1.1
2,546,609	+	asnB	Sama_2101	0.24	-1.2
2,546,609	+	asnB	Sama_2101	0.24	-0.3
2,546,609	+	asnB	Sama_2101	0.24	-0.9
2,546,610	-	asnB	Sama_2101	0.24	-1.3
2,546,610	-	asnB	Sama_2101	0.24	-2.9
2,546,630	-	asnB	Sama_2101	0.25	-0.4
2,546,630	-	asnB	Sama_2101	0.25	-1.0
2,546,648	+	asnB	Sama_2101	0.26	-0.5
2,546,649	-	asnB	Sama_2101	0.26	+0.5
2,546,649	-	asnB	Sama_2101	0.26	-1.1
2,546,649	-	asnB	Sama_2101	0.26	-0.8
2,546,672	-	asnB	Sama_2101	0.28	+1.7
2,546,678	+	asnB	Sama_2101	0.28	+1.0
2,546,678	+	asnB	Sama_2101	0.28	-0.4
2,546,679	-	asnB	Sama_2101	0.28	-0.2
2,546,679	-	asnB	Sama_2101	0.28	-1.3
2,546,679	-	asnB	Sama_2101	0.28	-2.1
2,546,679	-	asnB	Sama_2101	0.28	-0.2
2,546,747	+	asnB	Sama_2101	0.32	+1.7
2,546,747	+	asnB	Sama_2101	0.32	-1.1
2,546,747	+	asnB	Sama_2101	0.32	+0.8
2,546,748	-	asnB	Sama_2101	0.32	+0.3
2,546,784	-	asnB	Sama_2101	0.34	+0.2