Strain Fitness in Shewanella amazonensis SB2B around Sama_2060

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,495,660	+		Sama_2059	0.76	+0.4
2,495,660	+		Sama_2059	0.76	+0.8
2,495,756	-		Sama_2059	0.81	+3.4
2,495,778	-		Sama_2059	0.82	+0.8
2,495,791	+		Sama_2059	0.82	+0.5
2,495,792	-		Sama_2059	0.82	+1.6
2,495,815	+		Sama_2059	0.83	+0.6
2,495,854	+		Sama_2059	0.85	+1.6
2,495,854	+		Sama_2059	0.85	-0.3
2,495,855	-		Sama_2059	0.85	+1.9
2,495,855	-		Sama_2059	0.85	+0.5
2,495,855	-		Sama_2059	0.85	+0.6
2,495,855	-		Sama_2059	0.85	+2.3
2,495,866	-		Sama_2059	0.86	+0.3
2,495,866	-		Sama_2059	0.86	+1.1
2,495,888	-		Sama_2059	0.87	+0.2
2,495,890	+		Sama_2059	0.87	+1.8
2,495,891	-		Sama_2059	0.87	+1.2
2,496,035	-				+2.4
2,496,107	-				+2.0
2,496,160	+				+1.6
2,496,204	+				+0.0
2,496,219	+				+1.2
2,496,251	+				+0.1
2,496,252	-				+1.6
2,496,252	-				-0.6
2,496,253	+				-0.2
2,496,254	-				+0.6
2,496,254	-				+0.1
2,496,254	-				-0.3
2,496,254	-				-2.2
2,496,353	+				+1.2
2,496,354	-				+0.4
2,496,354	-				-0.4
2,496,354	-				-0.4
2,496,386	-				-0.4
2,496,406	+				+0.1
2,496,406	+				-0.3
2,496,407	-				+1.5
2,496,408	+				-0.0
2,496,408	+				-0.7
2,496,409	-				-1.4
2,496,409	-				+0.1
2,496,412	+				+0.3
2,496,412	+				+0.9
2,496,412	+				+0.3
2,496,412	+				-1.5
2,496,412	+				-0.5
2,496,412	+				-1.3
2,496,412	+				+0.6
2,496,412	+				-1.2
2,496,412	+				+0.3
2,496,412	+				+0.3
2,496,412	+				-0.9
2,496,413	-				-1.4
2,496,413	-				-0.9
2,496,413	-				-0.9
2,496,413	-				-0.1
2,496,413	-				+1.1
2,496,413	-				+0.6
2,496,413	-				-1.4
2,496,413	-				-0.4
2,496,413	-				-2.3
2,496,413	-				+0.3
2,496,413	-				+1.0
2,496,413	-				-1.5
2,496,416	+				+0.3
2,496,416	+				-2.0
2,496,417	-				-0.2
2,496,417	-				-0.2
2,496,421	+				-1.1
2,496,421	+				+1.6
2,496,421	+				-1.4
2,496,421	+				+0.1
2,496,422	-				-0.1
2,496,422	-				-1.6
2,496,422	-				+0.5
2,496,427	+				-0.9
2,496,427	+				-1.7
2,496,433	+				-0.4
2,496,433	+				+0.8
2,496,433	+				+1.4
2,496,433	+				-1.9
2,496,434	-				-1.8
2,496,434	-				-0.4
2,496,559	-				-1.1
2,496,768	+		Sama_2060	0.22	-0.7
2,496,768	+		Sama_2060	0.22	-2.1
2,496,769	-		Sama_2060	0.23	-2.2
2,496,769	-		Sama_2060	0.23	-1.4
2,496,788	-		Sama_2060	0.26	-1.3
2,496,886	+		Sama_2060	0.41	-0.4
2,496,886	+		Sama_2060	0.41	-1.7
2,496,886	+		Sama_2060	0.41	-1.3
2,496,886	+		Sama_2060	0.41	+0.1
2,496,886	+		Sama_2060	0.41	-0.8
2,496,886	+		Sama_2060	0.41	-1.4
2,496,887	-		Sama_2060	0.41	+1.3
2,496,887	-		Sama_2060	0.41	+1.1
2,496,887	-		Sama_2060	0.41	+0.3
2,496,887	-		Sama_2060	0.41	+0.3
2,496,887	-		Sama_2060	0.41	-0.8
2,496,889	-		Sama_2060	0.41	-1.7
2,496,895	+		Sama_2060	0.42	-0.2
2,496,895	+		Sama_2060	0.42	-0.3
2,496,964	-		Sama_2060	0.53	-0.4
2,496,993	-		Sama_2060	0.58	+0.1
2,497,142	+		Sama_2060	0.81	-1.1
2,497,164	-		Sama_2060	0.84	-0.4
2,497,172	+		Sama_2060	0.86	-1.2
2,497,173	-		Sama_2060	0.86	+1.2
2,497,173	-		Sama_2060	0.86	-0.2
2,497,173	-		Sama_2060	0.86	-1.5
2,497,226	+				+0.3
2,497,226	+				-1.1
2,497,226	+				+0.3
2,497,226	+				+0.1
2,497,226	+				-1.3
2,497,226	+				-1.8
2,497,226	+				-1.4
2,497,227	-				-0.5
2,497,227	-				+1.7
2,497,227	-				-0.7
2,497,227	-				-0.1
2,497,230	+				+0.3
2,497,230	+				-0.8
2,497,230	+				-1.3
2,497,231	-				+1.6
2,497,253	+				+0.3
2,497,266	+				+1.1
2,497,266	+				+0.7
2,497,267	-				-1.4
2,497,267	-				-1.9
2,497,269	+				+0.3
2,497,269	+				-2.4
2,497,270	-				-1.4
2,497,270	-				+0.8
2,497,270	-				-2.0
2,497,273	+				-0.2
2,497,273	+				+0.0
2,497,273	+				+0.2
2,497,274	-				+0.1
2,497,274	-				+0.3
2,497,320	+				+0.1
2,497,320	+				-1.7
2,497,320	+				-0.5
2,497,321	-				+0.3
2,497,383	+		Sama_2061	0.21	-0.2
2,497,461	+		Sama_2061	0.37	+0.2
2,497,461	+		Sama_2061	0.37	+1.4
2,497,462	-		Sama_2061	0.37	-0.7
2,497,462	-		Sama_2061	0.37	-0.8
2,497,495	+		Sama_2061	0.44	+1.6
2,497,495	+		Sama_2061	0.44	-0.2
2,497,496	-		Sama_2061	0.45	+0.3
2,497,566	-		Sama_2061	0.59	-0.9
2,497,671	+		Sama_2061	0.81	-0.9
2,497,681	+		Sama_2061	0.84	+1.1
2,497,681	+		Sama_2061	0.84	-1.2
2,497,716	-				+1.6
2,497,746	+				+0.1
2,497,759	+				+0.3
2,497,764	+				-0.9
2,497,828	+				-1.4
2,497,888	+				-0.2
2,497,888	+				-0.7