Strain Fitness in Shewanella amazonensis SB2B around Sama_2003

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,431,428	+		Sama_2001	0.66	-0.6
2,431,428	+		Sama_2001	0.66	-0.6
2,431,428	+		Sama_2001	0.66	-0.9
2,431,429	-		Sama_2001	0.66	-2.1
2,431,429	-		Sama_2001	0.66	+0.6
2,431,429	-		Sama_2001	0.66	-0.7
2,431,429	-		Sama_2001	0.66	+1.8
2,431,432	+		Sama_2001	0.66	-0.4
2,431,433	-		Sama_2001	0.66	-0.2
2,431,433	-		Sama_2001	0.66	-0.9
2,431,433	-		Sama_2001	0.66	+0.6
2,431,433	-		Sama_2001	0.66	+1.0
2,431,433	-		Sama_2001	0.66	-0.4
2,431,433	-		Sama_2001	0.66	-0.6
2,431,514	-		Sama_2001	0.74	-0.5
2,431,514	-		Sama_2001	0.74	-0.3
2,431,736	-				+1.6
2,431,773	+				-0.5
2,431,774	-				+0.6
2,431,875	-		Sama_2002	0.16	+0.4
2,431,875	-		Sama_2002	0.16	-2.0
2,431,875	-		Sama_2002	0.16	-1.0
2,431,897	+		Sama_2002	0.19	+0.4
2,431,897	+		Sama_2002	0.19	-0.2
2,431,897	+		Sama_2002	0.19	-0.9
2,431,897	+		Sama_2002	0.19	-0.2
2,431,898	-		Sama_2002	0.20	-0.2
2,431,900	+		Sama_2002	0.20	-0.9
2,431,937	+		Sama_2002	0.26	-1.6
2,431,937	+		Sama_2002	0.26	-1.2
2,431,938	-		Sama_2002	0.26	+0.3
2,431,938	-		Sama_2002	0.26	-0.7
2,431,938	-		Sama_2002	0.26	+0.6
2,431,965	+		Sama_2002	0.30	-2.0
2,431,965	+		Sama_2002	0.30	+0.0
2,431,965	+		Sama_2002	0.30	+1.6
2,431,965	+		Sama_2002	0.30	+1.3
2,431,966	-		Sama_2002	0.30	-1.6
2,431,966	-		Sama_2002	0.30	-0.7
2,431,999	+		Sama_2002	0.35	-0.4
2,431,999	+		Sama_2002	0.35	-0.8
2,432,000	-		Sama_2002	0.35	-1.2
2,432,000	-		Sama_2002	0.35	+0.6
2,432,056	+		Sama_2002	0.44	-1.5
2,432,081	-		Sama_2002	0.48	-0.9
2,432,081	-		Sama_2002	0.48	-1.4
2,432,140	+		Sama_2002	0.57	+0.8
2,432,141	-		Sama_2002	0.57	+1.4
2,432,141	-		Sama_2002	0.57	-1.6
2,432,166	+		Sama_2002	0.61	-0.7
2,432,245	+		Sama_2002	0.73	+0.3
2,432,252	+		Sama_2002	0.74	+1.0
2,432,306	+		Sama_2002	0.83	-0.7
2,432,323	+		Sama_2002	0.85	-0.2
2,432,323	+		Sama_2002	0.85	-0.6
2,432,323	+		Sama_2002	0.85	-1.1
2,432,323	+		Sama_2002	0.85	-0.2
2,432,323	+		Sama_2002	0.85	-1.1
2,432,323	+		Sama_2002	0.85	+0.0
2,432,323	+		Sama_2002	0.85	+0.2
2,432,323	+		Sama_2002	0.85	-1.2
2,432,324	-		Sama_2002	0.86	-1.6
2,432,324	-		Sama_2002	0.86	-1.7
2,432,324	-		Sama_2002	0.86	+0.7
2,432,324	-		Sama_2002	0.86	+0.3
2,432,324	-		Sama_2002	0.86	-0.5
2,432,324	-		Sama_2002	0.86	+0.6
2,432,324	-		Sama_2002	0.86	+0.6
2,432,324	-		Sama_2002	0.86	+1.0
2,432,324	-		Sama_2002	0.86	-1.3
2,432,324	-		Sama_2002	0.86	+0.3
2,432,324	-		Sama_2002	0.86	-1.5
2,432,324	-		Sama_2002	0.86	-1.1
2,432,324	-		Sama_2002	0.86	-0.7
2,432,324	-		Sama_2002	0.86	-1.1
2,432,324	-		Sama_2002	0.86	+0.1
2,432,325	+		Sama_2002	0.86	+1.9
2,432,325	+		Sama_2002	0.86	-1.2
2,432,325	+		Sama_2002	0.86	+0.6
2,432,326	-		Sama_2002	0.86	-1.3
2,432,326	-		Sama_2002	0.86	+0.3
2,432,326	-		Sama_2002	0.86	-1.6
2,432,326	-		Sama_2002	0.86	-1.0
2,432,444	+				+0.2
2,432,588	+				-0.4
2,432,588	+				+0.3
2,432,629	+				+0.1
2,432,630	-		Sama_2003	0.10	-0.1
2,432,677	-		Sama_2003	0.12	-1.3
2,432,759	+		Sama_2003	0.16	-0.7
2,432,760	-		Sama_2003	0.16	+1.4
2,432,789	+		Sama_2003	0.17	+0.6
2,432,790	-		Sama_2003	0.17	+1.2
2,432,793	-		Sama_2003	0.17	-0.4
2,432,803	-		Sama_2003	0.18	-0.5
2,432,803	-		Sama_2003	0.18	-0.9
2,432,803	-		Sama_2003	0.18	-0.9
2,432,847	-		Sama_2003	0.20	+0.6
2,432,863	+		Sama_2003	0.20	+0.6
2,432,863	+		Sama_2003	0.20	+0.3
2,432,864	-		Sama_2003	0.20	+1.3
2,432,864	-		Sama_2003	0.20	-1.4
2,432,864	-		Sama_2003	0.20	-1.9
2,432,878	-		Sama_2003	0.21	-0.1
2,433,050	-		Sama_2003	0.29	-1.6
2,433,120	-		Sama_2003	0.32	+1.6
2,433,140	+		Sama_2003	0.33	-1.9
2,433,159	-		Sama_2003	0.33	+0.8
2,433,195	+		Sama_2003	0.35	-0.0
2,433,195	+		Sama_2003	0.35	+0.2
2,433,196	-		Sama_2003	0.35	+0.4
2,433,213	-		Sama_2003	0.36	+0.6
2,433,213	-		Sama_2003	0.36	-1.8
2,433,213	-		Sama_2003	0.36	+2.2
2,433,296	+		Sama_2003	0.39	+0.2
2,433,296	+		Sama_2003	0.39	-0.4
2,433,296	+		Sama_2003	0.39	-0.0
2,433,357	-		Sama_2003	0.42	-0.9
2,433,357	-		Sama_2003	0.42	-0.1
2,433,359	+		Sama_2003	0.42	+0.6
2,433,359	+		Sama_2003	0.42	-1.7
2,433,360	-		Sama_2003	0.42	+0.8
2,433,402	-		Sama_2003	0.44	+1.6
2,433,452	+		Sama_2003	0.46	-1.1
2,433,453	-		Sama_2003	0.46	-1.5
2,433,453	-		Sama_2003	0.46	-1.0
2,433,465	+		Sama_2003	0.47	-1.1
2,433,512	+		Sama_2003	0.49	-0.6
2,433,512	+		Sama_2003	0.49	-0.2
2,433,513	-		Sama_2003	0.49	+0.3
2,433,535	+		Sama_2003	0.50	+1.6
2,433,535	+		Sama_2003	0.50	+0.2
2,433,535	+		Sama_2003	0.50	-0.7
2,433,566	-		Sama_2003	0.51	+0.6
2,433,566	-		Sama_2003	0.51	-1.9
2,433,566	-		Sama_2003	0.51	+1.7
2,433,566	-		Sama_2003	0.51	+0.8
2,433,566	-		Sama_2003	0.51	-0.2
2,433,566	-		Sama_2003	0.51	+1.0
2,433,566	-		Sama_2003	0.51	+0.6
2,433,635	-		Sama_2003	0.54	+2.9
2,433,641	-		Sama_2003	0.55	+2.0
2,433,741	+		Sama_2003	0.59	-0.8
2,433,742	-		Sama_2003	0.59	-0.6
2,433,764	-		Sama_2003	0.60	+0.3
2,433,824	+		Sama_2003	0.63	-0.6
2,434,000	+		Sama_2003	0.71	-0.0
2,434,001	-		Sama_2003	0.71	+0.6
2,434,076	+		Sama_2003	0.74	+0.6
2,434,085	+		Sama_2003	0.74	-0.2
2,434,188	-		Sama_2003	0.79	+0.9
2,434,189	+		Sama_2003	0.79	+0.9
2,434,190	-		Sama_2003	0.79	+0.3
2,434,190	-		Sama_2003	0.79	+0.5
2,434,191	+		Sama_2003	0.79	-0.4
2,434,250	+		Sama_2003	0.82	-1.2
2,434,251	-		Sama_2003	0.82	-0.6
2,434,251	-		Sama_2003	0.82	-0.8
2,434,309	-		Sama_2003	0.84	+0.4
2,434,316	+		Sama_2003	0.85	+0.4
2,434,317	-		Sama_2003	0.85	-1.9
2,434,349	+		Sama_2003	0.86	+0.3
2,434,384	+		Sama_2003	0.88	-0.3
2,434,461	+				-0.0
2,434,461	+				+0.5
2,434,461	+				-0.6
2,434,461	+				-0.4
2,434,461	+				-0.9
2,434,461	+				-0.4
2,434,462	-				+1.5
2,434,462	-				-0.7
2,434,462	-				-0.2
2,434,462	-				+0.4
2,434,481	+				+1.0
2,434,522	-				-0.8
2,434,522	-				+0.1
2,434,641	-				-1.2
2,434,642	+				-0.5
2,434,642	+				+1.4
2,434,642	+				+0.8
2,434,642	+				-0.5
2,434,642	+				+1.2
2,434,643	-				-0.9
2,434,643	-				-1.3
2,434,643	-				-0.2
2,434,643	-				-0.0
2,434,643	-				-0.7
2,434,643	-				-0.0
2,434,643	-				-0.7
2,434,643	-				-0.2
2,434,643	-				-0.2
2,434,643	-				-0.7
2,434,643	-				-1.1
2,434,643	-				-0.2
2,434,643	-				-0.2
2,434,643	-				+1.6
2,434,646	+				+0.8
2,434,646	+				-0.2
2,434,646	+				-0.2
2,434,646	+				-0.2
2,434,647	-				-0.9
2,434,647	-				+0.8
2,434,647	-				-0.8
2,434,647	-				-1.2
2,434,647	-				-0.7
2,434,647	-				+1.4
2,434,647	-				+0.4
2,434,647	-				+0.6
2,434,652	+				-0.9
2,434,652	+				+0.3
2,434,653	-				+0.3
2,434,653	-				+0.1
2,434,653	-				+0.4
2,434,653	-				+0.3
2,434,667	+				-0.5
2,434,680	+				-1.3
2,434,694	+				-1.9
2,434,694	+				-0.2
2,434,870	+		Sama_2004	0.22	+1.6
2,434,871	-		Sama_2004	0.22	-0.2
2,434,915	+		Sama_2004	0.28	-0.6
2,434,916	-		Sama_2004	0.28	+1.3
2,435,057	+		Sama_2004	0.48	-1.1
2,435,057	+		Sama_2004	0.48	-0.0
2,435,070	-		Sama_2004	0.50	-1.3
2,435,070	-		Sama_2004	0.50	-0.3
2,435,070	-		Sama_2004	0.50	-1.5
2,435,070	-		Sama_2004	0.50	+2.3
2,435,135	-		Sama_2004	0.59	-0.7
2,435,135	-		Sama_2004	0.59	+0.5
2,435,155	+		Sama_2004	0.62	-0.2
2,435,216	+		Sama_2004	0.70	-1.5
2,435,216	+		Sama_2004	0.70	-1.2
2,435,226	-		Sama_2004	0.71	+2.1
2,435,226	-		Sama_2004	0.71	-1.2
2,435,226	-		Sama_2004	0.71	+0.2
2,435,280	+		Sama_2004	0.79	+2.6
2,435,281	-		Sama_2004	0.79	+1.7
2,435,281	-		Sama_2004	0.79	+0.4
2,435,281	-		Sama_2004	0.79	+0.2
2,435,292	+		Sama_2004	0.80	+1.9
2,435,293	-		Sama_2004	0.81	+1.0
2,435,405	+				+1.0
2,435,418	+				+0.6
2,435,432	+				+2.6
2,435,488	+				-2.0
2,435,488	+				+0.4
2,435,488	+				+0.6
2,435,488	+				+0.1
2,435,489	-				+0.6
2,435,489	-				-0.7
2,435,489	-				+0.4
2,435,492	+				-1.3
2,435,492	+				-0.7
2,435,492	+				-1.1
2,435,492	+				-0.4
2,435,493	-				-1.4
2,435,493	-				+0.6
2,435,493	-				+0.3
2,435,536	+				-1.2
2,435,537	-				+0.3
2,435,537	-				-1.6
2,435,537	-				-0.8
2,435,540	+				+0.6
2,435,593	-				-1.0
2,435,593	-				-1.4
2,435,602	+				+0.6
2,435,602	+				-0.7
2,435,603	-				-0.2
2,435,603	-				-0.2
2,435,603	-				-0.1
2,435,614	+				-0.6
2,435,614	+				-1.5
2,435,615	-				-1.3
2,435,645	+				-1.1