Strain Fitness in Shewanella amazonensis SB2B around Sama_1928

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,355,209	-		Sama_1926	0.17	-1.8
2,355,222	+		Sama_1926	0.20	+0.0
2,355,222	+		Sama_1926	0.20	+1.1
2,355,223	-		Sama_1926	0.20	-0.8
2,355,223	-		Sama_1926	0.20	-0.4
2,355,249	+		Sama_1926	0.25	+0.9
2,355,249	+		Sama_1926	0.25	-0.3
2,355,249	+		Sama_1926	0.25	-1.0
2,355,250	-		Sama_1926	0.25	-1.2
2,355,250	-		Sama_1926	0.25	-1.4
2,355,250	-		Sama_1926	0.25	+0.5
2,355,250	-		Sama_1926	0.25	+0.3
2,355,250	-		Sama_1926	0.25	+0.7
2,355,293	+		Sama_1926	0.34	-1.3
2,355,294	-		Sama_1926	0.34	-0.3
2,355,294	-		Sama_1926	0.34	-1.3
2,355,318	+		Sama_1926	0.39	-2.5
2,355,319	-		Sama_1926	0.39	-0.1
2,355,325	-		Sama_1926	0.40	+0.8
2,355,375	+		Sama_1926	0.50	+1.5
2,355,376	-		Sama_1926	0.50	-1.5
2,355,376	-		Sama_1926	0.50	+0.6
2,355,399	+		Sama_1926	0.55	-0.3
2,355,493	-		Sama_1926	0.73	+0.5
2,355,504	+		Sama_1926	0.75	-0.7
2,355,504	+		Sama_1926	0.75	-2.2
2,355,504	+		Sama_1926	0.75	-0.1
2,355,505	-		Sama_1926	0.75	-0.8
2,355,505	-		Sama_1926	0.75	+0.9
2,355,505	-		Sama_1926	0.75	-1.4
2,355,561	-		Sama_1926	0.86	-2.1
2,355,561	-		Sama_1926	0.86	-1.2
2,355,600	+				+0.9
2,355,649	+				-0.3
2,355,649	+				-0.9
2,355,694	-				-0.5
2,355,694	-				-0.1
2,355,720	+				-0.1
2,355,720	+				-0.7
2,355,721	-				+0.2
2,355,739	-				+1.0
2,355,753	-		Sama_1927	0.11	-1.7
2,355,796	-		Sama_1927	0.20	-1.0
2,355,879	-		Sama_1927	0.39	+3.1
2,355,889	-		Sama_1927	0.41	-1.0
2,355,918	+		Sama_1927	0.48	-1.0
2,355,928	-		Sama_1927	0.50	+1.0
2,355,928	-		Sama_1927	0.50	+0.5
2,355,928	-		Sama_1927	0.50	+0.2
2,355,928	-		Sama_1927	0.50	-0.8
2,355,928	-		Sama_1927	0.50	+0.4
2,355,955	-		Sama_1927	0.56	-1.3
2,355,968	+		Sama_1927	0.59	-1.0
2,356,006	-		Sama_1927	0.68	+0.5
2,356,006	-		Sama_1927	0.68	-0.5
2,356,006	-		Sama_1927	0.68	-0.1
2,356,023	-		Sama_1927	0.72	-0.5
2,356,026	-		Sama_1927	0.73	-0.8
2,356,026	-		Sama_1927	0.73	-0.1
2,356,057	-		Sama_1927	0.80	-0.8
2,356,166	-				-0.6
2,356,166	-				-0.7
2,356,166	-				+0.3
2,356,185	+				-0.2
2,356,186	-				-1.7
2,356,186	-				+3.2
2,356,187	+				-1.4
2,356,187	+				+0.5
2,356,187	+				-0.8
2,356,188	-				+0.9
2,356,188	-				+0.2
2,356,193	-				-0.8
2,356,250	-				-2.4
2,356,282	+				+0.5
2,356,283	-				+0.9
2,356,292	-		Sama_1928	0.10	+0.5
2,356,292	-		Sama_1928	0.10	+1.0
2,356,300	+		Sama_1928	0.11	-0.4
2,356,300	+		Sama_1928	0.11	+2.5
2,356,301	-		Sama_1928	0.11	-0.4
2,356,301	-		Sama_1928	0.11	+1.5
2,356,314	-		Sama_1928	0.12	+0.9
2,356,363	-		Sama_1928	0.17	-1.6
2,356,387	-		Sama_1928	0.20	+0.9
2,356,422	-		Sama_1928	0.23	+0.2
2,356,422	-		Sama_1928	0.23	+0.7
2,356,422	-		Sama_1928	0.23	+0.9
2,356,446	-		Sama_1928	0.26	+0.2
2,356,520	-		Sama_1928	0.33	+0.5
2,356,536	+		Sama_1928	0.35	+0.2
2,356,536	+		Sama_1928	0.35	-0.8
2,356,537	-		Sama_1928	0.35	+0.8
2,356,537	-		Sama_1928	0.35	-0.8
2,356,537	-		Sama_1928	0.35	-0.8
2,356,538	-		Sama_1928	0.35	-1.7
2,356,615	-		Sama_1928	0.43	-0.8
2,356,615	-		Sama_1928	0.43	+0.7
2,356,617	+		Sama_1928	0.43	-0.3
2,356,618	-		Sama_1928	0.43	-0.8
2,356,618	-		Sama_1928	0.43	-0.8
2,356,740	-		Sama_1928	0.55	+0.7
2,356,771	-		Sama_1928	0.58	-0.2
2,356,771	-		Sama_1928	0.58	-0.7
2,356,778	-		Sama_1928	0.59	-0.5
2,356,911	+		Sama_1928	0.72	-0.7
2,356,912	-		Sama_1928	0.72	-0.2
2,356,912	-		Sama_1928	0.72	+1.2
2,356,947	-		Sama_1928	0.76	-1.1
2,357,034	+		Sama_1928	0.85	-0.1
2,357,035	-		Sama_1928	0.85	+0.4
2,357,035	-		Sama_1928	0.85	+0.5
2,357,035	-		Sama_1928	0.85	+0.8
2,357,160	+				-0.8
2,357,168	+				-2.0
2,357,169	-				-0.9
2,357,169	-				+1.5
2,357,210	+				+0.9
2,357,224	+				-0.3
2,357,225	-				-0.1
2,357,235	+				-0.7
2,357,236	-				+0.2
2,357,236	-				-0.8
2,357,241	+				+0.0
2,357,242	-				+0.9
2,357,266	-		Sama_1929	0.14	-1.8
2,357,266	-		Sama_1929	0.14	-0.2
2,357,271	-		Sama_1929	0.16	+0.5
2,357,296	+		Sama_1929	0.25	+1.9
2,357,383	-		Sama_1929	0.56	+0.2
2,357,412	+		Sama_1929	0.67	-1.6
2,357,412	+		Sama_1929	0.67	-1.4
2,357,413	-		Sama_1929	0.67	+0.5
2,357,461	+		Sama_1929	0.84	-0.2
2,357,462	-		Sama_1929	0.85	+0.6
2,357,487	-				-0.3
2,357,499	+				-1.9
2,357,500	-				-0.1
2,357,500	-				-0.9
2,357,500	-				-1.1
2,357,500	-				+0.1
2,357,504	+				+2.5
2,357,504	+				-0.6
2,357,505	-				+0.9
2,357,505	-				-1.6
2,357,505	-				+2.2
2,357,555	+				-0.1
2,357,555	+				+1.8
2,357,555	+				-1.7
2,357,557	+				+0.5
2,357,557	+				-1.9
2,357,557	+				-0.9
2,357,558	-				-0.9
2,357,558	-				-0.5
2,357,571	+				-1.8
2,357,665	+				-0.6
2,357,665	+				-1.2
2,357,665	+				+0.2
2,357,689	+				+0.9
2,357,689	+				+1.9
2,357,689	+				-0.3
2,357,781	+	minC	Sama_1930	0.23	-0.9
2,357,835	+	minC	Sama_1930	0.31	+0.0
2,358,014	+	minC	Sama_1930	0.57	-0.4
2,358,014	+	minC	Sama_1930	0.57	+2.8
2,358,086	-	minC	Sama_1930	0.68	-0.3
2,358,091	+	minC	Sama_1930	0.69	-0.7
2,358,091	+	minC	Sama_1930	0.69	-0.5
2,358,091	+	minC	Sama_1930	0.69	-0.7
2,358,092	-	minC	Sama_1930	0.69	-0.3
2,358,096	-	minC	Sama_1930	0.69	+1.5
2,358,151	+	minC	Sama_1930	0.78	-0.5
2,358,181	+	minC	Sama_1930	0.82	-0.9
2,358,182	-	minC	Sama_1930	0.82	-0.2