Strain Fitness in Shewanella amazonensis SB2B around Sama_1889

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,304,116	+		Sama_1887	0.87	+0.2
2,304,116	+		Sama_1887	0.87	-1.7
2,304,128	+		Sama_1887	0.87	+0.5
2,304,129	-		Sama_1887	0.87	-1.0
2,304,241	-				-1.2
2,304,241	-				-1.2
2,304,263	+				+0.5
2,304,290	+				+0.5
2,304,291	-				+0.2
2,304,291	-				-1.2
2,304,291	-				+0.2
2,304,295	+				-2.5
2,304,295	+				-2.4
2,304,295	+				+0.5
2,304,295	+				+0.5
2,304,296	-				-1.0
2,304,296	-				-0.3
2,304,371	-				-1.2
2,304,412	-				-1.0
2,304,430	+		Sama_1888	0.12	-1.2
2,304,430	+		Sama_1888	0.12	+0.2
2,304,430	+		Sama_1888	0.12	-0.7
2,304,430	+		Sama_1888	0.12	+0.2
2,304,431	-		Sama_1888	0.13	-1.2
2,304,431	-		Sama_1888	0.13	-2.6
2,304,431	-		Sama_1888	0.13	+0.5
2,304,431	-		Sama_1888	0.13	-0.3
2,304,432	+		Sama_1888	0.13	-0.1
2,304,471	-		Sama_1888	0.21	-0.2
2,304,476	+		Sama_1888	0.22	-0.7
2,304,544	-		Sama_1888	0.35	+0.6
2,304,544	-		Sama_1888	0.35	+0.4
2,304,545	+		Sama_1888	0.36	-1.2
2,304,546	-		Sama_1888	0.36	-1.1
2,304,546	-		Sama_1888	0.36	-1.6
2,304,546	-		Sama_1888	0.36	-1.1
2,304,546	-		Sama_1888	0.36	-0.1
2,304,546	-		Sama_1888	0.36	+0.3
2,304,546	-		Sama_1888	0.36	-1.2
2,304,549	+		Sama_1888	0.36	-0.7
2,304,549	+		Sama_1888	0.36	-1.3
2,304,550	-		Sama_1888	0.37	-0.1
2,304,550	-		Sama_1888	0.37	-1.7
2,304,550	-		Sama_1888	0.37	-2.2
2,304,550	-		Sama_1888	0.37	-1.6
2,304,563	+		Sama_1888	0.39	-0.2
2,304,567	+		Sama_1888	0.40	+0.7
2,304,567	+		Sama_1888	0.40	-0.3
2,304,567	+		Sama_1888	0.40	-1.0
2,304,567	+		Sama_1888	0.40	+0.7
2,304,568	-		Sama_1888	0.40	+0.5
2,304,568	-		Sama_1888	0.40	+1.2
2,304,568	-		Sama_1888	0.40	+0.9
2,304,568	-		Sama_1888	0.40	-0.8
2,304,568	-		Sama_1888	0.40	+1.9
2,304,568	-		Sama_1888	0.40	-1.7
2,304,568	-		Sama_1888	0.40	+0.2
2,304,568	-		Sama_1888	0.40	-1.3
2,304,568	-		Sama_1888	0.40	+0.7
2,304,568	-		Sama_1888	0.40	-0.5
2,304,586	+		Sama_1888	0.44	-0.6
2,304,654	-		Sama_1888	0.58	-0.1
2,304,654	-		Sama_1888	0.58	-0.8
2,304,654	-		Sama_1888	0.58	-1.3
2,304,732	-		Sama_1888	0.73	+1.9
2,304,748	-		Sama_1888	0.77	-1.3
2,304,849	+				-0.3
2,304,870	-				+0.6
2,304,905	-				-1.8
2,304,905	-				+0.2
2,304,966	-				-0.5
2,304,972	+				-1.5
2,304,974	+				-0.3
2,304,974	+				-0.9
2,304,990	+				-0.5
2,304,991	-				-2.4
2,305,015	+				-1.7
2,305,016	-				+0.8
2,305,016	-				-2.2
2,305,020	-				-2.5
2,305,133	+		Sama_1889	0.30	-0.2
2,305,266	+		Sama_1889	0.71	-1.7
2,305,311	+		Sama_1889	0.85	-1.1
2,305,330	+				+0.4
2,305,371	+				+0.2
2,305,403	-				-1.4
2,305,403	-				-1.1
2,305,450	-				-1.6
2,305,450	-				-0.1
2,305,480	-				-0.8
2,305,505	+				-1.4
2,305,593	-				-0.3
2,305,593	-				+1.7
2,305,593	-				-1.4
2,305,638	-				+0.8
2,305,638	-				-0.7
2,305,646	-				-1.4
2,305,800	+				-0.3
2,305,800	+				+0.2
2,305,800	+				-0.7
2,305,801	-				-0.4
2,305,801	-				+0.7
2,305,801	-				+0.6
2,305,875	+				+1.2
2,305,875	+				+0.2
2,305,875	+				-0.3
2,305,883	+				+0.6
2,306,025	+		Sama_1890	0.19	-0.8
2,306,026	-		Sama_1890	0.19	+0.2
2,306,068	-		Sama_1890	0.24	+0.8
2,306,114	+		Sama_1890	0.28	-1.2
2,306,114	+		Sama_1890	0.28	-0.4
2,306,114	+		Sama_1890	0.28	-0.3
2,306,115	-		Sama_1890	0.28	-2.1
2,306,115	-		Sama_1890	0.28	+0.3
2,306,115	-		Sama_1890	0.28	+0.5
2,306,115	-		Sama_1890	0.28	+1.5
2,306,115	-		Sama_1890	0.28	+0.5
2,306,131	+		Sama_1890	0.30	-1.3
2,306,131	+		Sama_1890	0.30	-1.2
2,306,146	-		Sama_1890	0.32	-0.7
2,306,149	+		Sama_1890	0.32	-0.1
2,306,150	-		Sama_1890	0.32	+0.1
2,306,150	-		Sama_1890	0.32	+0.0
2,306,195	-		Sama_1890	0.36	-1.8
2,306,246	-		Sama_1890	0.42	+0.1
2,306,290	-		Sama_1890	0.46	+0.5
2,306,290	-		Sama_1890	0.46	-1.5