Strain Fitness in Shewanella amazonensis SB2B around Sama_1853

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,256,202	-				-1.1
2,256,230	+				-0.1
2,256,230	+				-1.1
2,256,230	+				+1.7
2,256,230	+				-1.7
2,256,231	-				+0.3
2,256,233	+				-0.7
2,256,253	+				-0.1
2,256,254	-				-1.2
2,256,260	+				+0.4
2,256,314	-				+0.5
2,256,441	+		Sama_1852	0.20	-0.5
2,256,463	+		Sama_1852	0.22	-1.1
2,256,463	+		Sama_1852	0.22	+0.9
2,256,463	+		Sama_1852	0.22	+0.9
2,256,464	-		Sama_1852	0.22	-1.4
2,256,483	+		Sama_1852	0.25	-0.3
2,256,559	+		Sama_1852	0.33	-2.2
2,256,559	+		Sama_1852	0.33	+0.2
2,256,560	-		Sama_1852	0.33	-1.2
2,256,572	+		Sama_1852	0.34	+0.5
2,256,573	-		Sama_1852	0.34	+1.3
2,256,577	-		Sama_1852	0.35	-1.3
2,256,577	-		Sama_1852	0.35	+0.2
2,256,588	-		Sama_1852	0.36	-0.5
2,256,701	+		Sama_1852	0.49	+0.3
2,256,702	-		Sama_1852	0.49	-0.8
2,256,772	+		Sama_1852	0.56	+1.3
2,256,881	+		Sama_1852	0.68	+0.5
2,256,926	+		Sama_1852	0.73	+1.3
2,257,032	+		Sama_1852	0.85	-0.7
2,257,032	+		Sama_1852	0.85	-0.6
2,257,067	+		Sama_1852	0.89	-0.5
2,257,068	-		Sama_1852	0.89	+1.5
2,257,068	-		Sama_1852	0.89	-1.4
2,257,145	+				+1.3
2,257,181	+				-1.1
2,257,184	+				+0.5
2,257,184	+				+0.5
2,257,184	+				-0.8
2,257,184	+				+0.2
2,257,185	-				-2.3
2,257,234	+				+0.2
2,257,234	+				+0.9
2,257,265	+				-2.0
2,257,266	-				-0.1
2,257,266	-				+0.3
2,257,266	-				-0.1
2,257,306	+				-1.7
2,257,356	+		Sama_1853	0.12	-0.1
2,257,357	-		Sama_1853	0.12	-0.3
2,257,357	-		Sama_1853	0.12	-0.3
2,257,357	-		Sama_1853	0.12	-0.7
2,257,448	+		Sama_1853	0.17	-0.8
2,257,448	+		Sama_1853	0.17	-1.7
2,257,451	+		Sama_1853	0.17	+1.2
2,257,451	+		Sama_1853	0.17	+0.4
2,257,451	+		Sama_1853	0.17	+0.7
2,257,514	+		Sama_1853	0.20	-1.3
2,257,735	+		Sama_1853	0.33	-0.3
2,257,736	-		Sama_1853	0.33	-1.8
2,257,736	-		Sama_1853	0.33	-0.5
2,257,736	-		Sama_1853	0.33	-0.3
2,257,736	-		Sama_1853	0.33	-1.4
2,257,736	-		Sama_1853	0.33	-0.5
2,257,737	+		Sama_1853	0.33	-0.1
2,257,737	+		Sama_1853	0.33	-0.5
2,257,738	-		Sama_1853	0.33	-1.5
2,257,738	-		Sama_1853	0.33	+0.5
2,257,820	-		Sama_1853	0.38	-1.6
2,257,820	-		Sama_1853	0.38	-0.1
2,257,827	-		Sama_1853	0.38	-0.3
2,257,847	-		Sama_1853	0.39	-1.7
2,257,968	+		Sama_1853	0.46	-1.7
2,258,195	+		Sama_1853	0.59	-0.5
2,258,196	-		Sama_1853	0.59	-0.8
2,258,196	-		Sama_1853	0.59	-1.5
2,258,196	-		Sama_1853	0.59	+1.5
2,258,202	-		Sama_1853	0.59	-0.5
2,258,309	+		Sama_1853	0.65	-0.2
2,258,310	-		Sama_1853	0.65	-0.3
2,258,310	-		Sama_1853	0.65	-0.1
2,258,346	-		Sama_1853	0.67	-0.3
2,258,346	-		Sama_1853	0.67	-0.6
2,258,456	+		Sama_1853	0.73	+0.5
2,258,634	+		Sama_1853	0.83	-0.5
2,258,634	+		Sama_1853	0.83	+0.3
2,258,635	-		Sama_1853	0.83	-1.3
2,258,638	-		Sama_1853	0.83	-1.1
2,258,667	+		Sama_1853	0.85	-1.9
2,258,668	-		Sama_1853	0.85	-1.3
2,258,811	+				+0.5
2,258,812	-				-0.3
2,258,940	+				-0.7
2,258,941	-				+0.9
2,258,954	+				-0.3
2,258,954	+				-2.0
2,258,954	+				+0.4
2,258,954	+				-1.2
2,258,955	-				-0.5
2,258,955	-				+0.2
2,258,955	-				-0.4
2,258,955	-				-1.2
2,258,955	-				-1.0
2,259,053	-		Sama_1854	0.45	-1.0
2,259,206	-				+0.9
2,259,206	-				-1.6
2,259,283	-				+0.8
2,259,307	-				-2.2
2,259,340	+				-2.1
2,259,340	+				-0.4
2,259,340	+				-0.1
2,259,341	-				-0.7
2,259,432	+	thiH	Sama_1855	0.11	-1.3
2,259,448	+	thiH	Sama_1855	0.13	-1.0
2,259,448	+	thiH	Sama_1855	0.13	-0.4
2,259,448	+	thiH	Sama_1855	0.13	-0.8
2,259,448	+	thiH	Sama_1855	0.13	+0.5
2,259,448	+	thiH	Sama_1855	0.13	-1.6
2,259,449	-	thiH	Sama_1855	0.13	-1.0
2,259,449	-	thiH	Sama_1855	0.13	-1.8
2,259,449	-	thiH	Sama_1855	0.13	+0.1
2,259,449	-	thiH	Sama_1855	0.13	+2.2
2,259,449	-	thiH	Sama_1855	0.13	-0.1
2,259,568	+	thiH	Sama_1855	0.24	-0.6
2,259,568	+	thiH	Sama_1855	0.24	-0.3
2,259,569	-	thiH	Sama_1855	0.24	-1.0
2,259,569	-	thiH	Sama_1855	0.24	-1.7
2,259,569	-	thiH	Sama_1855	0.24	-0.6
2,259,569	-	thiH	Sama_1855	0.24	-0.3
2,259,569	-	thiH	Sama_1855	0.24	-1.1
2,259,587	-	thiH	Sama_1855	0.25	-1.5
2,259,649	+	thiH	Sama_1855	0.31	-1.1
2,259,649	+	thiH	Sama_1855	0.31	-0.1
2,259,684	+	thiH	Sama_1855	0.34	+0.5
2,259,793	+	thiH	Sama_1855	0.44	-0.7
2,259,809	-	thiH	Sama_1855	0.45	+1.9
2,259,847	-	thiH	Sama_1855	0.49	-0.5
2,259,847	-	thiH	Sama_1855	0.49	+1.5
2,259,847	-	thiH	Sama_1855	0.49	-0.7
2,259,847	-	thiH	Sama_1855	0.49	-1.2
2,259,862	-	thiH	Sama_1855	0.50	-2.4