Strain Fitness in Shewanella amazonensis SB2B around Sama_1800

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,190,930	+		Sama_1798	0.87	+2.5
2,190,930	+		Sama_1798	0.87	+2.1
2,190,930	+		Sama_1798	0.87	+1.5
2,190,930	+		Sama_1798	0.87	+1.8
2,190,972	+				+3.2
2,190,973	-				+2.8
2,190,993	+				+2.5
2,190,993	+				+1.5
2,190,995	+				+1.9
2,190,995	+				+1.2
2,190,995	+				-0.1
2,190,995	+				+0.7
2,190,995	+				+1.1
2,190,996	-				+3.1
2,190,996	-				-2.6
2,190,996	-				+1.4
2,190,996	-				+2.5
2,190,996	-				+0.5
2,190,996	-				+0.9
2,190,996	-				+0.4
2,190,996	-				+0.9
2,190,996	-				+2.3
2,190,996	-				-0.2
2,190,997	+				+3.0
2,190,997	+				+2.2
2,190,997	+				+2.5
2,190,997	+				+2.8
2,190,997	+				+1.5
2,190,997	+				+2.9
2,190,997	+				+3.0
2,190,997	+				+2.5
2,190,998	-				+3.0
2,190,998	-				+3.3
2,190,998	-				+1.5
2,190,998	-				+3.1
2,190,998	-				+2.4
2,191,049	+				+0.5
2,191,054	-				-0.5
2,191,147	-				-0.9
2,191,164	+		Sama_1799	0.11	+0.9
2,191,165	-		Sama_1799	0.12	-1.8
2,191,206	+		Sama_1799	0.17	+2.1
2,191,209	+		Sama_1799	0.17	+0.1
2,191,212	+		Sama_1799	0.18	-1.1
2,191,305	+		Sama_1799	0.30	+1.5
2,191,313	-		Sama_1799	0.31	+0.7
2,191,387	-		Sama_1799	0.41	+2.5
2,191,459	-		Sama_1799	0.51	+1.3
2,191,677	-		Sama_1799	0.80	+0.1
2,191,677	-		Sama_1799	0.80	+0.5
2,191,680	+		Sama_1799	0.80	+0.8
2,191,680	+		Sama_1799	0.80	-0.8
2,191,680	+		Sama_1799	0.80	+0.9
2,191,681	-		Sama_1799	0.80	+0.3
2,191,681	-		Sama_1799	0.80	+3.3
2,191,684	+		Sama_1799	0.80	+0.9
2,191,700	+		Sama_1799	0.83	+0.2
2,191,746	+		Sama_1799	0.89	+1.5
2,191,765	+				-1.7
2,191,765	+				+0.4
2,191,766	-				+0.9
2,191,766	-				-0.2
2,191,862	+				-0.5
2,191,879	+				-0.1
2,191,880	-				-0.1
2,191,880	-				-1.1
2,191,884	+				-0.9
2,191,900	-				-0.6
2,192,290	-		Sama_1800	0.40	+0.2
2,192,290	-		Sama_1800	0.40	-1.8
2,192,323	-		Sama_1800	0.44	+0.2
2,192,323	-		Sama_1800	0.44	-0.1
2,192,444	+		Sama_1800	0.57	+0.2
2,192,444	+		Sama_1800	0.57	+2.2
2,192,445	-		Sama_1800	0.57	-0.4
2,192,449	+		Sama_1800	0.57	+0.4
2,192,450	-		Sama_1800	0.57	+0.7
2,192,486	+		Sama_1800	0.61	-1.2
2,192,486	+		Sama_1800	0.61	-0.2
2,192,511	+		Sama_1800	0.64	-0.6
2,192,560	+		Sama_1800	0.69	+1.5
2,192,560	+		Sama_1800	0.69	-0.1
2,192,560	+		Sama_1800	0.69	-0.9
2,192,560	+		Sama_1800	0.69	+2.1
2,192,560	+		Sama_1800	0.69	-0.1
2,192,560	+		Sama_1800	0.69	-1.7
2,192,560	+		Sama_1800	0.69	-1.2
2,192,562	+		Sama_1800	0.69	+0.8
2,192,602	+		Sama_1800	0.74	-0.6
2,192,602	+		Sama_1800	0.74	-0.1
2,192,617	+		Sama_1800	0.75	-0.3
2,192,617	+		Sama_1800	0.75	-1.9
2,192,618	-		Sama_1800	0.75	-0.6
2,192,618	-		Sama_1800	0.75	+0.7
2,192,714	+		Sama_1800	0.86	+0.7
2,192,714	+		Sama_1800	0.86	-0.3
2,192,787	+				-0.9
2,192,821	+				+0.2
2,192,845	+				-1.2
2,192,858	+				-1.2
2,192,877	-				+0.5
2,192,879	+				-1.2
2,192,896	-				-1.4
2,193,008	+				+0.6
2,193,009	-				+0.5
2,193,018	+		Sama_1801	0.11	-1.2
2,193,018	+		Sama_1801	0.11	-0.1
2,193,018	+		Sama_1801	0.11	-0.9
2,193,018	+		Sama_1801	0.11	+0.2
2,193,078	+		Sama_1801	0.17	-0.9
2,193,078	+		Sama_1801	0.17	-1.6
2,193,078	+		Sama_1801	0.17	+0.7
2,193,078	+		Sama_1801	0.17	-0.6
2,193,078	+		Sama_1801	0.17	-0.5
2,193,078	+		Sama_1801	0.17	+1.5
2,193,093	-		Sama_1801	0.18	+0.5
2,193,196	-		Sama_1801	0.29	-0.3
2,193,243	+		Sama_1801	0.34	-0.3
2,193,243	+		Sama_1801	0.34	+0.3
2,193,243	+		Sama_1801	0.34	+0.9
2,193,243	+		Sama_1801	0.34	-0.9
2,193,243	+		Sama_1801	0.34	+0.8
2,193,243	+		Sama_1801	0.34	+0.1
2,193,243	+		Sama_1801	0.34	-0.2
2,193,411	+		Sama_1801	0.52	-0.6
2,193,411	+		Sama_1801	0.52	+0.5
2,193,412	-		Sama_1801	0.52	-1.1
2,193,412	-		Sama_1801	0.52	-0.6
2,193,543	-		Sama_1801	0.65	-0.8
2,193,543	-		Sama_1801	0.65	-0.3
2,193,605	+		Sama_1801	0.72	+0.5
2,193,605	+		Sama_1801	0.72	-0.4
2,193,606	-		Sama_1801	0.72	+0.4
2,193,606	-		Sama_1801	0.72	+0.2
2,193,635	+		Sama_1801	0.75	+0.2
2,193,636	-		Sama_1801	0.75	+0.5
2,193,751	+		Sama_1801	0.87	-1.7
2,193,751	+		Sama_1801	0.87	+0.5
2,193,751	+		Sama_1801	0.87	-0.5
2,193,751	+		Sama_1801	0.87	-0.1
2,193,806	+				-0.6