Strain Fitness in Shewanella amazonensis SB2B around Sama_1787

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,179,349	+		Sama_1786	0.65	-1.4
2,179,472	-		Sama_1786	0.70	+0.2
2,179,472	-		Sama_1786	0.70	+0.7
2,179,474	-		Sama_1786	0.70	+0.4
2,179,487	-		Sama_1786	0.71	-1.0
2,179,487	-		Sama_1786	0.71	+0.4
2,179,563	-		Sama_1786	0.74	-1.0
2,179,563	-		Sama_1786	0.74	+0.5
2,179,564	+		Sama_1786	0.74	+0.7
2,179,591	-		Sama_1786	0.75	-2.0
2,179,652	+		Sama_1786	0.78	-0.8
2,179,652	+		Sama_1786	0.78	-1.6
2,179,652	+		Sama_1786	0.78	+1.8
2,179,653	-		Sama_1786	0.78	-1.0
2,179,653	-		Sama_1786	0.78	+1.2
2,179,653	-		Sama_1786	0.78	-0.5
2,179,653	-		Sama_1786	0.78	-0.8
2,179,653	-		Sama_1786	0.78	+0.2
2,179,653	-		Sama_1786	0.78	-1.0
2,179,656	+		Sama_1786	0.78	-0.0
2,179,656	+		Sama_1786	0.78	+1.3
2,179,656	+		Sama_1786	0.78	-0.7
2,179,656	+		Sama_1786	0.78	+0.1
2,179,656	+		Sama_1786	0.78	-0.0
2,179,656	+		Sama_1786	0.78	+0.3
2,179,657	-		Sama_1786	0.78	+1.5
2,179,657	-		Sama_1786	0.78	-0.3
2,179,657	-		Sama_1786	0.78	-0.8
2,179,671	+		Sama_1786	0.79	+0.5
2,179,671	+		Sama_1786	0.79	+0.5
2,179,672	-		Sama_1786	0.79	-0.5
2,179,672	-		Sama_1786	0.79	-0.5
2,179,816	-		Sama_1786	0.85	-0.4
2,179,816	-		Sama_1786	0.85	+2.5
2,179,820	+		Sama_1786	0.85	+1.0
2,179,821	-		Sama_1786	0.85	+0.2
2,179,854	+		Sama_1786	0.86	-0.9
2,179,854	+		Sama_1786	0.86	+0.2
2,179,854	+		Sama_1786	0.86	-0.3
2,179,854	+		Sama_1786	0.86	-0.6
2,179,854	+		Sama_1786	0.86	+1.0
2,179,855	-		Sama_1786	0.86	+0.8
2,179,855	-		Sama_1786	0.86	-0.9
2,179,957	-				-0.6
2,179,990	+				+3.3
2,180,018	+				+1.5
2,180,045	+				-0.5
2,180,045	+				-0.8
2,180,045	+				-2.0
2,180,099	+				-0.6
2,180,099	+				-0.1
2,180,100	-				-0.3
2,180,100	-				+0.1
2,180,133	+				-0.4
2,180,183	+				-0.5
2,180,210	+				+0.7
2,180,215	-				-0.3
2,180,235	-				+0.5
2,180,285	-				-2.7
2,180,303	-				-1.2
2,180,320	+				-0.6
2,180,335	-				-0.8
2,180,335	-				+0.4
2,180,349	+				+0.2
2,180,390	+		Sama_1787	0.22	-0.3
2,180,391	-		Sama_1787	0.22	-0.3
2,180,391	-		Sama_1787	0.22	+1.0
2,180,405	+		Sama_1787	0.28	-0.7
2,180,405	+		Sama_1787	0.28	-0.0
2,180,457	-		Sama_1787	0.50	-0.8
2,180,568	+				-0.8
2,180,568	+				-0.3
2,180,568	+				-2.3
2,180,568	+				-1.2
2,180,569	-				-0.5
2,180,569	-				-1.4
2,180,578	+				+0.0
2,180,578	+				-1.4
2,180,578	+				-0.3
2,180,579	-				+2.5
2,180,579	-				+1.0
2,180,579	-				-0.6
2,180,579	-				+0.5
2,180,600	+				-1.2
2,180,601	-				-0.5
2,180,660	-				+0.4
2,180,660	-				-0.4
2,180,663	+				+0.2
2,180,665	+				+0.7
2,180,666	-				+0.1
2,180,666	-				-0.5
2,180,673	+				-0.9
2,180,686	-				+0.2
2,180,736	+				+0.2
2,180,788	+				+1.1
2,180,789	-				-0.3
2,180,807	+				+1.5
2,180,807	+				-1.0
2,180,808	-				-0.9
2,180,810	+				-1.8
2,180,831	+				-0.5
2,180,832	-				-1.3
2,180,834	-				-0.0
2,180,852	+				-0.0
2,180,853	-				-0.9
2,180,883	+				+0.2
2,180,990	+				+0.5
2,180,991	-				-1.2
2,180,995	-				-0.3
2,181,005	+				-0.3
2,181,028	-				-1.3
2,181,042	+				+1.5
2,181,085	+				-0.5
2,181,155	+				+0.2
2,181,202	-		Sama_1788	0.17	+0.5
2,181,248	+		Sama_1788	0.31	-0.8
2,181,249	-		Sama_1788	0.31	-1.0
2,181,321	-		Sama_1788	0.53	+0.7
2,181,327	+		Sama_1788	0.55	+0.5
2,181,338	+		Sama_1788	0.58	-1.0
2,181,396	+		Sama_1788	0.75	-0.7
2,181,397	-		Sama_1788	0.76	-1.7
2,181,469	+				+0.5
2,181,469	+				-0.0
2,181,470	-				-0.6
2,181,494	-				-1.3
2,181,494	-				+0.1
2,181,527	-				-0.7
2,181,567	-				-0.9
2,181,567	-				-0.5
2,181,567	-				-0.3