Strain Fitness in Shewanella amazonensis SB2B around Sama_1715

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
2,096,068	+				-1.5
2,096,069	-				+0.7
2,096,077	-				+1.0
2,096,096	+				+0.3
2,096,097	-				+0.4
2,096,120	+				-0.7
2,096,323	+				-0.8
2,096,323	+				-0.2
2,096,340	+				-1.1
2,096,345	+				-0.7
2,096,430	+				+1.6
2,096,461	+				+0.2
2,096,462	-				+0.6
2,096,627	+		Sama_1714	0.22	-0.3
2,096,653	+		Sama_1714	0.32	+1.0
2,096,653	+		Sama_1714	0.32	-0.3
2,096,654	-		Sama_1714	0.32	-0.7
2,096,680	+		Sama_1714	0.41	+0.6
2,096,684	+		Sama_1714	0.43	+0.3
2,096,684	+		Sama_1714	0.43	+0.3
2,096,684	+		Sama_1714	0.43	-0.6
2,096,685	-		Sama_1714	0.43	+0.0
2,096,685	-		Sama_1714	0.43	+1.3
2,096,685	-		Sama_1714	0.43	+0.1
2,096,740	+		Sama_1714	0.63	+0.0
2,096,751	+		Sama_1714	0.67	-1.3
2,096,751	+		Sama_1714	0.67	+0.3
2,096,751	+		Sama_1714	0.67	+0.1
2,096,751	+		Sama_1714	0.67	+0.3
2,096,752	-		Sama_1714	0.68	-0.6
2,096,781	+		Sama_1714	0.78	-0.6
2,096,811	-		Sama_1714	0.89	-0.6
2,096,842	-				-1.1
2,096,842	-				-0.2
2,096,883	+				-1.9
2,096,883	+				+1.1
2,096,884	-				-1.3
2,096,896	+				+0.0
2,096,897	-				-0.7
2,096,900	-				-1.7
2,096,900	-				-0.7
2,096,902	+				-0.2
2,096,908	+				+1.7
2,096,908	+				-0.7
2,096,908	+				-0.2
2,096,909	-				+1.0
2,096,910	+				+0.3
2,096,911	-				+2.3
2,096,916	+				-0.2
2,096,916	+				-0.2
2,096,916	+				+1.0
2,096,917	-				+1.2
2,096,920	+				+0.4
2,096,952	+				-0.7
2,096,953	-				-0.6
2,096,969	+				+0.5
2,096,969	+				+0.4
2,096,970	-				-0.4
2,096,970	-				+0.3
2,096,970	-				+0.6
2,096,973	+				-0.3
2,096,974	-				-0.9
2,096,974	-				-1.1
2,096,981	+				+0.1
2,096,981	+				-1.4
2,096,982	-				+0.0
2,096,982	-				-0.1
2,096,983	+				-0.3
2,096,983	+				-0.7
2,096,983	+				+0.2
2,097,006	-				-0.6
2,097,012	+				-0.4
2,097,019	+				+0.3
2,097,020	-				-0.9
2,097,020	-				+1.7
2,097,020	-				-0.3
2,097,020	-				+1.3
2,097,020	-				+2.0
2,097,020	-				-1.3
2,097,020	-				+0.8
2,097,020	-				-0.6
2,097,055	+				-0.4
2,097,289	-		Sama_1715	0.23	-0.3
2,097,289	-		Sama_1715	0.23	-0.3
2,097,370	-		Sama_1715	0.31	-0.6
2,097,403	-		Sama_1715	0.34	-1.3
2,097,454	-		Sama_1715	0.39	+0.5
2,097,599	-		Sama_1715	0.52	+0.4
2,097,599	-		Sama_1715	0.52	-0.2
2,097,731	-		Sama_1715	0.65	+1.0
2,097,736	+		Sama_1715	0.65	+0.3
2,097,737	-		Sama_1715	0.65	-2.3
2,097,773	-		Sama_1715	0.69	-1.5
2,097,773	-		Sama_1715	0.69	+0.2
2,098,019	+				-0.6
2,098,185	+				-0.9
2,098,190	+				-1.4
2,098,190	+				+0.3
2,098,190	+				-0.5
2,098,190	+				+0.3
2,098,191	-				-0.3
2,098,191	-				-1.1
2,098,194	+				+0.6
2,098,194	+				-1.5
2,098,194	+				-2.2
2,098,194	+				+0.4
2,098,194	+				+1.1
2,098,194	+				-1.8
2,098,195	-				-0.9
2,098,350	-				-1.2
2,098,350	-				+1.6
2,098,509	-		Sama_1716	0.13	-1.2
2,098,530	+		Sama_1716	0.14	-1.0
2,098,531	-		Sama_1716	0.14	-1.0
2,098,563	+		Sama_1716	0.15	+0.5
2,098,581	+		Sama_1716	0.15	-1.8
2,098,581	+		Sama_1716	0.15	+0.3
2,098,581	+		Sama_1716	0.15	-0.7
2,098,581	+		Sama_1716	0.15	-0.4
2,098,582	-		Sama_1716	0.16	+0.3
2,098,582	-		Sama_1716	0.16	-1.0
2,098,582	-		Sama_1716	0.16	-2.2
2,098,587	+		Sama_1716	0.16	-2.2
2,098,587	+		Sama_1716	0.16	+0.0
2,098,587	+		Sama_1716	0.16	-1.1
2,098,587	+		Sama_1716	0.16	-0.7
2,098,587	+		Sama_1716	0.16	-1.0
2,098,587	+		Sama_1716	0.16	-2.1
2,098,588	-		Sama_1716	0.16	+1.0
2,098,604	+		Sama_1716	0.16	-0.1
2,098,788	-		Sama_1716	0.22	-0.8
2,098,914	+		Sama_1716	0.26	-0.6
2,098,915	-		Sama_1716	0.26	-1.1
2,098,916	+		Sama_1716	0.26	+0.4
2,098,944	+		Sama_1716	0.27	+0.2
2,098,944	+		Sama_1716	0.27	-0.1
2,098,945	-		Sama_1716	0.27	-1.0