Strain Fitness in Shewanella amazonensis SB2B around Sama_1559

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,898,354	-				-0.6
1,898,355	+				-0.5
1,898,355	+				+0.9
1,898,355	+				+0.1
1,898,355	+				+0.7
1,898,355	+				+0.7
1,898,355	+				-0.5
1,898,355	+				+0.5
1,898,355	+				-0.0
1,898,356	-				-1.2
1,898,356	-				+2.0
1,898,356	-				-1.4
1,898,356	-				+0.1
1,898,356	-				-0.1
1,898,356	-				-1.6
1,898,356	-				-0.3
1,898,356	-				-0.5
1,898,356	-				-0.2
1,898,356	-				+0.2
1,898,356	-				+1.4
1,898,409	-				-1.0
1,898,452	-		Sama_1558	0.14	-0.0
1,898,520	-		Sama_1558	0.24	+2.0
1,898,520	-		Sama_1558	0.24	+0.7
1,898,527	-		Sama_1558	0.25	-1.6
1,898,703	-		Sama_1558	0.49	-0.9
1,898,727	+		Sama_1558	0.53	+0.5
1,898,786	+		Sama_1558	0.61	-0.2
1,898,852	-		Sama_1558	0.70	+0.9
1,898,852	-		Sama_1558	0.70	-0.5
1,898,884	+		Sama_1558	0.75	+0.5
1,898,970	-		Sama_1558	0.87	+0.9
1,898,976	+		Sama_1558	0.87	-1.3
1,898,976	+		Sama_1558	0.87	-1.6
1,898,979	+		Sama_1558	0.88	+0.7
1,898,979	+		Sama_1558	0.88	+0.4
1,898,980	-		Sama_1558	0.88	+0.7
1,898,980	-		Sama_1558	0.88	-0.1
1,898,980	-		Sama_1558	0.88	+2.2
1,898,980	-		Sama_1558	0.88	+0.6
1,898,980	-		Sama_1558	0.88	+1.1
1,898,997	-				-0.5
1,898,998	+				-1.5
1,898,999	-				-0.3
1,898,999	-				+0.1
1,898,999	-				+0.7
1,898,999	-				+0.7
1,899,010	+				+0.4
1,899,010	+				-0.0
1,899,010	+				-0.3
1,899,011	-				-1.0
1,899,105	+				-0.6
1,899,106	-				-0.8
1,899,119	+				-1.0
1,899,130	+				-0.6
1,899,131	-				-0.6
1,899,138	+				+0.9
1,899,139	-				+0.4
1,899,156	+				+0.4
1,899,156	+				+0.1
1,899,157	-				+1.7
1,899,157	-				+0.2
1,899,157	-				-0.1
1,899,173	-				-1.1
1,899,173	-				+1.4
1,899,173	-				-0.5
1,899,194	+				-0.9
1,899,507	+		Sama_1559	0.18	+1.7
1,899,569	+		Sama_1559	0.25	+1.0
1,899,569	+		Sama_1559	0.25	+1.3
1,899,569	+		Sama_1559	0.25	-1.1
1,899,569	+		Sama_1559	0.25	-0.3
1,899,570	-		Sama_1559	0.25	-0.0
1,899,596	+		Sama_1559	0.28	-0.9
1,899,596	+		Sama_1559	0.28	-0.3
1,899,596	+		Sama_1559	0.28	+1.6
1,899,629	+		Sama_1559	0.32	+0.3
1,899,629	+		Sama_1559	0.32	-1.5
1,899,629	+		Sama_1559	0.32	-0.2
1,899,629	+		Sama_1559	0.32	-0.9
1,899,629	+		Sama_1559	0.32	-0.6
1,899,630	-		Sama_1559	0.32	-0.1
1,899,630	-		Sama_1559	0.32	+0.2
1,899,751	-		Sama_1559	0.45	-1.0
1,899,793	+		Sama_1559	0.50	-0.0
1,899,793	+		Sama_1559	0.50	-0.7
1,899,799	+		Sama_1559	0.51	-2.0
1,899,911	-		Sama_1559	0.64	-1.6
1,899,937	+		Sama_1559	0.66	-0.1
1,899,937	+		Sama_1559	0.66	+0.5
1,899,937	+		Sama_1559	0.66	+0.3
1,899,938	-		Sama_1559	0.67	+1.3
1,899,938	-		Sama_1559	0.67	+2.9
1,899,959	+		Sama_1559	0.69	-1.4
1,899,959	+		Sama_1559	0.69	-1.1
1,899,959	+		Sama_1559	0.69	-1.1
1,899,959	+		Sama_1559	0.69	-0.2
1,899,959	+		Sama_1559	0.69	-1.4
1,899,960	-		Sama_1559	0.69	+1.4
1,899,962	+		Sama_1559	0.69	-0.1
1,899,977	+		Sama_1559	0.71	-0.4
1,899,977	+		Sama_1559	0.71	+2.1
1,899,977	+		Sama_1559	0.71	-0.3
1,900,019	+		Sama_1559	0.76	-0.6
1,900,099	-		Sama_1559	0.85	-1.3
1,900,099	-		Sama_1559	0.85	+0.4
1,900,106	+		Sama_1559	0.86	+2.3
1,900,146	+				-1.2
1,900,220	+				-0.3
1,900,221	-				+0.7
1,900,227	+				+2.0
1,900,227	+				+0.7
1,900,227	+				+1.1
1,900,227	+				-0.0
1,900,228	-				-0.6
1,900,228	-				+1.0
1,900,240	+				-0.8
1,900,248	+				-1.2
1,900,248	+				-1.6
1,900,248	+				-0.5
1,900,372	+		Sama_1560	0.12	+3.3
1,900,491	+		Sama_1560	0.26	+1.6
1,900,491	+		Sama_1560	0.26	+0.2
1,900,491	+		Sama_1560	0.26	+1.7
1,900,491	+		Sama_1560	0.26	+2.1
1,900,492	-		Sama_1560	0.26	+0.7
1,900,560	+		Sama_1560	0.34	-0.8
1,900,560	+		Sama_1560	0.34	-0.4
1,900,663	+		Sama_1560	0.47	+0.1
1,900,664	-		Sama_1560	0.47	+2.2
1,900,687	+		Sama_1560	0.49	+2.2
1,900,688	-		Sama_1560	0.49	+0.9
1,900,698	+		Sama_1560	0.51	-0.3
1,900,708	+		Sama_1560	0.52	+0.2
1,900,708	+		Sama_1560	0.52	-0.8
1,900,708	+		Sama_1560	0.52	-0.2
1,900,853	+		Sama_1560	0.69	+0.1
1,900,853	+		Sama_1560	0.69	-1.3
1,900,873	+		Sama_1560	0.71	+0.1
1,900,886	+		Sama_1560	0.73	-0.3
1,901,028	-		Sama_1560	0.90	+0.7
1,901,114	+				-0.1
1,901,191	-				+1.1
1,901,191	-				-0.6