Strain Fitness in Shewanella amazonensis SB2B around Sama_1542

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,877,795	+		Sama_1541	0.33	+2.1
1,877,972	-		Sama_1541	0.46	-1.4
1,878,024	+		Sama_1541	0.50	-1.0
1,878,187	+		Sama_1541	0.62	-0.1
1,878,188	-		Sama_1541	0.62	+1.1
1,878,206	+		Sama_1541	0.64	+0.4
1,878,207	-		Sama_1541	0.64	-4.3
1,878,211	+		Sama_1541	0.64	-0.1
1,878,256	+		Sama_1541	0.67	-0.1
1,878,257	-		Sama_1541	0.67	-0.1
1,878,257	-		Sama_1541	0.67	-1.7
1,878,257	-		Sama_1541	0.67	-0.9
1,878,289	+		Sama_1541	0.70	-1.1
1,878,289	+		Sama_1541	0.70	+1.4
1,878,289	+		Sama_1541	0.70	+0.1
1,878,289	+		Sama_1541	0.70	-2.6
1,878,290	-		Sama_1541	0.70	-1.0
1,878,290	-		Sama_1541	0.70	-0.5
1,878,290	-		Sama_1541	0.70	+0.1
1,878,290	-		Sama_1541	0.70	-0.6
1,878,290	-		Sama_1541	0.70	-0.1
1,878,290	-		Sama_1541	0.70	-0.5
1,878,290	-		Sama_1541	0.70	-0.6
1,878,290	-		Sama_1541	0.70	-0.7
1,878,295	+		Sama_1541	0.70	-0.4
1,878,295	+		Sama_1541	0.70	-0.6
1,878,295	+		Sama_1541	0.70	-0.1
1,878,295	+		Sama_1541	0.70	+1.7
1,878,295	+		Sama_1541	0.70	+0.1
1,878,295	+		Sama_1541	0.70	+0.4
1,878,296	-		Sama_1541	0.70	-0.1
1,878,296	-		Sama_1541	0.70	+0.4
1,878,296	-		Sama_1541	0.70	-2.9
1,878,296	-		Sama_1541	0.70	+0.4
1,878,296	-		Sama_1541	0.70	-0.1
1,878,296	-		Sama_1541	0.70	+0.1
1,878,296	-		Sama_1541	0.70	-0.5
1,878,296	-		Sama_1541	0.70	+0.4
1,878,299	-		Sama_1541	0.70	-2.1
1,878,315	+		Sama_1541	0.72	-1.9
1,878,325	+		Sama_1541	0.72	-0.5
1,878,326	-		Sama_1541	0.72	-0.1
1,878,326	-		Sama_1541	0.72	+0.0
1,878,326	-		Sama_1541	0.72	-0.1
1,878,326	-		Sama_1541	0.72	+0.7
1,878,326	-		Sama_1541	0.72	-0.1
1,878,348	+		Sama_1541	0.74	+0.7
1,878,349	-		Sama_1541	0.74	+0.4
1,878,349	-		Sama_1541	0.74	-1.1
1,878,349	-		Sama_1541	0.74	-1.1
1,878,371	+		Sama_1541	0.76	+1.1
1,878,444	+		Sama_1541	0.81	+1.7
1,878,444	+		Sama_1541	0.81	+0.1
1,878,444	+		Sama_1541	0.81	-0.5
1,878,444	+		Sama_1541	0.81	-1.2
1,878,445	-		Sama_1541	0.81	-0.1
1,878,445	-		Sama_1541	0.81	-1.3
1,878,449	-		Sama_1541	0.82	+1.7
1,878,566	+				-0.6
1,878,567	-				+0.7
1,878,567	-				-0.1
1,878,567	-				-1.3
1,878,568	+				-0.8
1,878,569	-				-0.2
1,878,569	-				-1.4
1,878,626	+				+0.4
1,878,627	-				-1.1
1,878,627	-				-1.7
1,878,629	+				-1.2
1,878,629	+				-0.6
1,878,629	+				-1.5
1,878,630	-				-0.1
1,878,630	-				-0.1
1,878,650	-				-1.5
1,878,686	+				-0.5
1,878,686	+				-0.1
1,878,703	+				+0.1
1,878,721	+				-0.1
1,878,829	+		Sama_1542	0.19	-0.1
1,878,830	-		Sama_1542	0.20	-0.6
1,878,838	-		Sama_1542	0.21	-2.5
1,878,910	-		Sama_1542	0.31	-1.0
1,879,081	-		Sama_1542	0.57	+0.9
1,879,081	-		Sama_1542	0.57	+0.1
1,879,144	+		Sama_1542	0.66	-1.5
1,879,145	-		Sama_1542	0.66	+2.7
1,879,186	+		Sama_1542	0.72	-0.5
1,879,186	+		Sama_1542	0.72	-0.6
1,879,187	-		Sama_1542	0.72	+0.1
1,879,187	-		Sama_1542	0.72	-3.3
1,879,193	+		Sama_1542	0.73	-1.4
1,879,193	+		Sama_1542	0.73	-0.6
1,879,193	+		Sama_1542	0.73	-1.4
1,879,194	-		Sama_1542	0.73	-2.8
1,879,261	-		Sama_1542	0.83	-0.6
1,879,341	-				-1.8
1,879,341	-				+0.4
1,879,341	-				-1.4
1,879,376	+				-0.8
1,879,377	-				-0.3
1,879,425	-				-0.1
1,879,433	+				-1.9
1,879,443	+				-2.3
1,879,443	+				-0.6
1,879,444	-				+1.6
1,879,453	-				-1.5
1,879,506	+				-1.5
1,879,506	+				+0.6
1,879,507	-				-1.1
1,879,507	-				+0.0
1,879,511	+				-1.2
1,879,512	-				+0.1
1,879,546	+				+1.1
1,879,546	+				+1.1
1,879,546	+				-0.1
1,879,565	+				-0.8
1,879,565	+				-1.1
1,879,569	+				-1.0
1,879,587	+				-1.2
1,879,587	+				-1.7
1,879,588	-				-0.6
1,879,619	-				-1.1
1,879,619	-				-1.2
1,879,624	+				-1.0
1,879,625	-				-0.8
1,879,685	+		Sama_1543	0.16	-1.0
1,879,718	+		Sama_1543	0.20	+1.1
1,879,718	+		Sama_1543	0.20	+1.1
1,879,718	+		Sama_1543	0.20	+0.4
1,879,719	-		Sama_1543	0.20	-1.6
1,879,719	-		Sama_1543	0.20	+1.0
1,879,719	-		Sama_1543	0.20	+1.7
1,879,736	+		Sama_1543	0.22	-0.3
1,879,877	+		Sama_1543	0.39	+0.7
1,879,877	+		Sama_1543	0.39	+0.7
1,879,940	+		Sama_1543	0.46	+1.0
1,879,940	+		Sama_1543	0.46	+0.2
1,879,940	+		Sama_1543	0.46	+1.2
1,879,948	+		Sama_1543	0.47	-2.9
1,879,948	+		Sama_1543	0.47	+0.5
1,879,949	-		Sama_1543	0.47	+0.3
1,880,009	-		Sama_1543	0.54	-0.6
1,880,071	+		Sama_1543	0.61	+0.4
1,880,071	+		Sama_1543	0.61	+0.2
1,880,097	+		Sama_1543	0.64	+1.0
1,880,097	+		Sama_1543	0.64	-1.5
1,880,097	+		Sama_1543	0.64	-0.8
1,880,098	-		Sama_1543	0.64	-0.1
1,880,098	-		Sama_1543	0.64	+0.2
1,880,098	-		Sama_1543	0.64	-0.5
1,880,098	-		Sama_1543	0.64	+0.7
1,880,100	-		Sama_1543	0.65	+1.7
1,880,120	+		Sama_1543	0.67	-0.9
1,880,120	+		Sama_1543	0.67	+0.4
1,880,122	+		Sama_1543	0.67	+0.9
1,880,122	+		Sama_1543	0.67	-0.4
1,880,122	+		Sama_1543	0.67	-1.2
1,880,123	-		Sama_1543	0.67	-1.1
1,880,123	-		Sama_1543	0.67	-0.6
1,880,142	+		Sama_1543	0.70	-0.5
1,880,142	+		Sama_1543	0.70	+0.8