Strain Fitness in Shewanella amazonensis SB2B around Sama_1524

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,852,642	+		Sama_1523	0.51	-1.2
1,852,642	+		Sama_1523	0.51	+0.9
1,852,643	-		Sama_1523	0.51	+1.5
1,852,643	-		Sama_1523	0.51	-0.9
1,852,643	-		Sama_1523	0.51	-0.9
1,852,733	+		Sama_1523	0.57	+1.5
1,852,734	-		Sama_1523	0.57	+0.7
1,852,781	-		Sama_1523	0.59	-0.2
1,852,817	+		Sama_1523	0.61	-0.9
1,852,817	+		Sama_1523	0.61	+0.2
1,852,817	+		Sama_1523	0.61	-0.2
1,852,817	+		Sama_1523	0.61	+0.1
1,852,817	+		Sama_1523	0.61	+0.2
1,852,817	+		Sama_1523	0.61	+0.4
1,852,818	-		Sama_1523	0.61	-0.4
1,852,820	+		Sama_1523	0.62	+1.6
1,852,820	+		Sama_1523	0.62	-0.1
1,852,951	+		Sama_1523	0.69	+0.1
1,852,951	+		Sama_1523	0.69	+1.7
1,853,051	+		Sama_1523	0.75	-0.6
1,853,051	+		Sama_1523	0.75	-1.7
1,853,052	-		Sama_1523	0.75	+0.2
1,853,130	+		Sama_1523	0.80	-1.4
1,853,130	+		Sama_1523	0.80	-1.1
1,853,130	+		Sama_1523	0.80	+0.1
1,853,130	+		Sama_1523	0.80	-1.7
1,853,131	-		Sama_1523	0.80	-0.1
1,853,251	+		Sama_1523	0.87	-0.9
1,853,262	-		Sama_1523	0.87	-0.5
1,853,271	-		Sama_1523	0.88	-0.1
1,853,283	+		Sama_1523	0.89	+0.4
1,853,284	-		Sama_1523	0.89	-2.4
1,853,339	-				+0.4
1,853,363	-				+0.7
1,853,406	+				-0.9
1,853,490	-				+1.1
1,853,531	-				+0.1
1,853,551	-				+1.1
1,853,583	+				-0.3
1,853,584	-				-2.3
1,853,584	-				-0.3
1,853,584	-				+0.7
1,853,585	+				+1.3
1,853,629	+				-0.7
1,853,741	+				+0.2
1,853,741	+				-0.3
1,853,742	-				-1.0
1,853,745	-				+1.7
1,853,750	-				-2.3
1,853,750	-				-1.7
1,853,795	+				+0.5
1,853,795	+				+0.6
1,853,795	+				+0.7
1,853,795	+				+1.4
1,853,796	-				+0.2
1,853,796	-				-1.0
1,853,796	-				-1.4
1,853,799	+				+0.4
1,853,799	+				+0.5
1,853,799	+				+0.2
1,853,800	-				-0.1
1,853,800	-				-1.8
1,853,945	+		Sama_1524	0.17	-0.1
1,853,962	+		Sama_1524	0.18	-0.3
1,853,963	-		Sama_1524	0.18	-0.6
1,853,963	-		Sama_1524	0.18	-0.1
1,853,977	-		Sama_1524	0.19	-0.7
1,854,117	+		Sama_1524	0.27	-1.2
1,854,117	+		Sama_1524	0.27	-0.7
1,854,117	+		Sama_1524	0.27	+1.0
1,854,118	-		Sama_1524	0.27	+0.1
1,854,118	-		Sama_1524	0.27	-1.3
1,854,135	+		Sama_1524	0.28	+0.2
1,854,135	+		Sama_1524	0.28	+1.0
1,854,135	+		Sama_1524	0.28	-0.6
1,854,135	+		Sama_1524	0.28	+1.2
1,854,135	+		Sama_1524	0.28	+0.7
1,854,135	+		Sama_1524	0.28	-0.8
1,854,135	+		Sama_1524	0.28	+2.3
1,854,135	+		Sama_1524	0.28	-0.4
1,854,327	+		Sama_1524	0.38	-0.7
1,854,327	+		Sama_1524	0.38	+0.2
1,854,362	-		Sama_1524	0.40	-1.2
1,854,468	+		Sama_1524	0.46	-1.5
1,854,469	-		Sama_1524	0.46	-0.6
1,854,616	-		Sama_1524	0.54	-0.1
1,855,018	+		Sama_1524	0.75	+1.7
1,855,101	+		Sama_1524	0.80	-1.1
1,855,134	+		Sama_1524	0.81	-1.1
1,855,135	-		Sama_1524	0.82	-0.1
1,855,141	-		Sama_1524	0.82	-0.1
1,855,182	+		Sama_1524	0.84	+2.3
1,855,182	+		Sama_1524	0.84	+0.2
1,855,182	+		Sama_1524	0.84	+0.4
1,855,182	+		Sama_1524	0.84	+1.7
1,855,182	+		Sama_1524	0.84	+1.4
1,855,182	+		Sama_1524	0.84	+0.4
1,855,182	+		Sama_1524	0.84	-1.1
1,855,182	+		Sama_1524	0.84	-1.5
1,855,183	-		Sama_1524	0.84	-0.6
1,855,183	-		Sama_1524	0.84	-0.1
1,855,183	-		Sama_1524	0.84	+0.2
1,855,183	-		Sama_1524	0.84	+0.4
1,855,183	-		Sama_1524	0.84	+0.4
1,855,183	-		Sama_1524	0.84	-2.1
1,855,184	+		Sama_1524	0.84	+0.1
1,855,185	-		Sama_1524	0.84	-0.4
1,855,185	-		Sama_1524	0.84	-0.7
1,855,185	-		Sama_1524	0.84	-1.4
1,855,185	-		Sama_1524	0.84	-1.1
1,855,185	-		Sama_1524	0.84	+0.7
1,855,276	+		Sama_1524	0.89	+1.6
1,855,301	-				-1.0
1,855,310	-				-1.4
1,855,310	-				-1.0
1,855,360	+				-0.9
1,855,360	+				-0.8
1,855,364	+				+0.0
1,855,364	+				+0.4
1,855,364	+				+0.5
1,855,364	+				-0.5
1,855,364	+				-2.1
1,855,365	-				+0.5
1,855,365	-				-0.1
1,855,365	-				-0.1
1,855,365	-				-0.3
1,855,463	-				-0.9
1,855,475	+				-1.7
1,855,556	+		Sama_1525	0.11	-0.4
1,855,556	+		Sama_1525	0.11	-1.3
1,855,556	+		Sama_1525	0.11	+0.1
1,855,670	+		Sama_1525	0.28	-0.4
1,855,758	+		Sama_1525	0.41	+0.7
1,855,776	+		Sama_1525	0.44	+1.7
1,855,776	+		Sama_1525	0.44	+0.9
1,855,776	+		Sama_1525	0.44	+1.6
1,855,777	-		Sama_1525	0.44	-1.2
1,855,942	-		Sama_1525	0.68	+0.1
1,855,942	-		Sama_1525	0.68	+2.7
1,855,976	+		Sama_1525	0.73	+0.1
1,855,976	+		Sama_1525	0.73	+0.7
1,856,029	+		Sama_1525	0.80	-2.6
1,856,162	-				-0.4
1,856,167	+				-0.1
1,856,168	-				+0.7
1,856,212	-				-0.2
1,856,248	-				+0.1