Strain Fitness in Shewanella amazonensis SB2B around Sama_1497

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,810,864	-		Sama_1495	0.79	-1.3
1,810,909	+		Sama_1495	0.82	+1.9
1,810,909	+		Sama_1495	0.82	+0.2
1,810,909	+		Sama_1495	0.82	+1.7
1,810,909	+		Sama_1495	0.82	+2.0
1,810,909	+		Sama_1495	0.82	+1.5
1,810,910	-		Sama_1495	0.83	-1.3
1,810,910	-		Sama_1495	0.83	+1.1
1,810,913	+		Sama_1495	0.83	+1.9
1,810,914	-		Sama_1495	0.83	+1.0
1,810,914	-		Sama_1495	0.83	+0.0
1,811,109	+				+2.3
1,811,109	+				-0.1
1,811,109	+				+2.5
1,811,110	-				+0.7
1,811,121	+				-0.6
1,811,122	-				-0.1
1,811,122	-				-0.6
1,811,122	-				+0.7
1,811,122	-				+1.4
1,811,122	-				+2.3
1,811,144	+				-0.7
1,811,193	-				+0.4
1,811,249	-				+0.2
1,811,254	+				+3.2
1,811,275	+				-1.0
1,811,275	+				+1.0
1,811,275	+				-0.1
1,811,275	+				+1.0
1,811,276	-				-1.9
1,811,276	-				+1.7
1,811,276	-				-0.6
1,811,332	+				+0.2
1,811,332	+				+0.7
1,811,333	-				-0.3
1,811,333	-				-1.4
1,811,334	+				-0.4
1,811,334	+				+2.2
1,811,334	+				+0.5
1,811,334	+				+3.3
1,811,335	-		Sama_1496	0.10	+0.7
1,811,384	-		Sama_1496	0.21	-0.3
1,811,414	+		Sama_1496	0.28	+2.0
1,811,422	-		Sama_1496	0.30	+0.7
1,811,586	-		Sama_1496	0.67	-0.4
1,811,586	-		Sama_1496	0.67	+0.8
1,811,624	+		Sama_1496	0.75	+0.4
1,811,635	+		Sama_1496	0.78	+1.7
1,811,635	+		Sama_1496	0.78	+0.7
1,811,636	-		Sama_1496	0.78	-1.3
1,811,636	-		Sama_1496	0.78	-0.3
1,811,636	-		Sama_1496	0.78	+4.7
1,811,636	-		Sama_1496	0.78	+0.7
1,811,637	+		Sama_1496	0.78	-0.3
1,811,638	-		Sama_1496	0.78	-1.4
1,811,638	-		Sama_1496	0.78	+0.2
1,811,638	-		Sama_1496	0.78	-0.3
1,811,662	+		Sama_1496	0.84	+0.1
1,811,671	-		Sama_1496	0.86	+0.2
1,811,691	-				+0.4
1,811,792	+				+1.7
1,811,793	-				+0.2
1,811,793	-				+1.0
1,811,928	-	pflA	Sama_1497	0.18	-0.6
1,811,970	+	pflA	Sama_1497	0.24	+3.4
1,811,999	-	pflA	Sama_1497	0.28	+0.5
1,812,030	-	pflA	Sama_1497	0.32	+1.4
1,812,065	+	pflA	Sama_1497	0.37	+1.7
1,812,130	+	pflA	Sama_1497	0.46	+1.3
1,812,130	+	pflA	Sama_1497	0.46	+2.2
1,812,131	-	pflA	Sama_1497	0.46	-1.0
1,812,131	-	pflA	Sama_1497	0.46	-1.0
1,812,131	-	pflA	Sama_1497	0.46	+2.7
1,812,131	-	pflA	Sama_1497	0.46	-0.7
1,812,131	-	pflA	Sama_1497	0.46	+0.3
1,812,131	-	pflA	Sama_1497	0.46	+0.4
1,812,169	+	pflA	Sama_1497	0.51	+1.3
1,812,175	+	pflA	Sama_1497	0.52	+1.7
1,812,175	+	pflA	Sama_1497	0.52	-0.1
1,812,175	+	pflA	Sama_1497	0.52	-0.1
1,812,176	-	pflA	Sama_1497	0.52	-0.6
1,812,176	-	pflA	Sama_1497	0.52	+0.1
1,812,176	-	pflA	Sama_1497	0.52	-0.3
1,812,228	+	pflA	Sama_1497	0.59	+1.2
1,812,228	+	pflA	Sama_1497	0.59	+0.0
1,812,229	-	pflA	Sama_1497	0.59	-0.1
1,812,286	+	pflA	Sama_1497	0.67	+0.0
1,812,287	-	pflA	Sama_1497	0.67	+0.9
1,812,345	-	pflA	Sama_1497	0.75	+0.4
1,812,453	+	pflA	Sama_1497	0.89	+1.0
1,812,453	+	pflA	Sama_1497	0.89	+0.7
1,812,606	-				+0.2
1,812,620	+				-1.3
1,812,633	+				+0.4
1,812,633	+				+0.2
1,812,633	+				+3.1
1,812,634	-				+0.7
1,812,704	-				+0.2
1,812,704	-				-0.3
1,812,725	+				-0.4
1,812,824	+				+2.7
1,812,912	+		Sama_1498	0.13	+0.7
1,812,913	-		Sama_1498	0.13	+0.7
1,813,047	+		Sama_1498	0.19	-1.2
1,813,047	+		Sama_1498	0.19	+2.7
1,813,048	-		Sama_1498	0.19	+0.6
1,813,065	-		Sama_1498	0.20	-0.3
1,813,065	-		Sama_1498	0.20	+0.9
1,813,075	-		Sama_1498	0.20	-0.3
1,813,118	+		Sama_1498	0.22	+1.2
1,813,118	+		Sama_1498	0.22	+0.4
1,813,119	-		Sama_1498	0.22	-0.3
1,813,119	-		Sama_1498	0.22	-2.0
1,813,164	+		Sama_1498	0.24	-1.5
1,813,164	+		Sama_1498	0.24	+0.9
1,813,165	-		Sama_1498	0.24	-0.7
1,813,211	+		Sama_1498	0.26	+0.7
1,813,278	-		Sama_1498	0.29	+2.2
1,813,383	-		Sama_1498	0.33	+2.2
1,813,388	+		Sama_1498	0.34	+0.9
1,813,388	+		Sama_1498	0.34	-1.3
1,813,388	+		Sama_1498	0.34	-0.6
1,813,389	-		Sama_1498	0.34	-1.2
1,813,389	-		Sama_1498	0.34	+2.2
1,813,389	-		Sama_1498	0.34	-0.7
1,813,401	+		Sama_1498	0.34	-0.7
1,813,401	+		Sama_1498	0.34	+1.2
1,813,430	+		Sama_1498	0.36	-2.1
1,813,485	-		Sama_1498	0.38	-0.4
1,813,506	+		Sama_1498	0.39	+1.2
1,813,525	+		Sama_1498	0.40	-1.3
1,813,525	+		Sama_1498	0.40	-0.7
1,813,525	+		Sama_1498	0.40	-0.8
1,813,526	-		Sama_1498	0.40	-1.1
1,813,526	-		Sama_1498	0.40	+1.2
1,813,526	-		Sama_1498	0.40	-0.1