Strain Fitness in Shewanella amazonensis SB2B around Sama_1478

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,788,301	+		Sama_1477	0.79	+0.2
1,788,301	+		Sama_1477	0.79	-0.1
1,788,301	+		Sama_1477	0.79	+0.3
1,788,343	+		Sama_1477	0.80	+0.4
1,788,344	-		Sama_1477	0.81	-0.3
1,788,344	-		Sama_1477	0.81	+2.7
1,788,439	+		Sama_1477	0.84	-0.3
1,788,440	-		Sama_1477	0.84	-0.3
1,788,440	-		Sama_1477	0.84	+0.4
1,788,446	+		Sama_1477	0.84	+0.2
1,788,501	+		Sama_1477	0.86	+0.2
1,788,501	+		Sama_1477	0.86	-1.4
1,788,736	+				-0.3
1,788,736	+				-1.6
1,788,737	-				-0.1
1,788,737	-				+3.3
1,788,777	+				+0.6
1,788,896	-				-0.4
1,788,906	+				-0.1
1,788,906	+				+0.7
1,788,906	+				+0.2
1,788,971	+				-0.1
1,788,971	+				-0.7
1,788,971	+				-0.3
1,788,972	-				+0.6
1,788,972	-				-2.4
1,789,011	+				-0.1
1,789,012	-				-0.6
1,789,012	-				+1.4
1,789,033	+				-0.3
1,789,033	+				+0.4
1,789,033	+				-0.6
1,789,034	-				+2.5
1,789,034	-				-1.5
1,789,034	-				-0.2
1,789,034	-				-0.7
1,789,034	-				+0.7
1,789,144	-				-0.7
1,789,144	-				-1.6
1,789,173	+				+0.7
1,789,184	+				-1.1
1,789,186	+				-0.4
1,789,186	+				+1.3
1,789,186	+				-0.6
1,789,187	-				-0.1
1,789,187	-				-1.0
1,789,187	-				+0.3
1,789,187	-				-1.2
1,789,193	-				-0.1
1,789,237	-				+1.5
1,789,242	+				-2.0
1,789,243	-				-0.6
1,789,243	-				+0.4
1,789,245	+				-1.2
1,789,253	-				+0.2
1,789,263	+				-1.4
1,789,263	+				-0.6
1,789,264	-				+0.1
1,789,294	+				+1.4
1,789,294	+				+0.7
1,789,294	+				-2.1
1,789,294	+				+0.2
1,789,294	+				+0.4
1,789,295	-				-1.0
1,789,295	-				-0.6
1,789,295	-				+0.9
1,789,295	-				+3.5
1,789,295	-				-1.8
1,789,295	-				-0.4
1,789,378	-				+0.6
1,789,439	-		Sama_1478	0.15	-0.3
1,789,478	+		Sama_1478	0.19	+2.7
1,789,478	+		Sama_1478	0.19	-0.3
1,789,478	+		Sama_1478	0.19	-0.4
1,789,479	-		Sama_1478	0.19	+0.6
1,789,479	-		Sama_1478	0.19	-1.1
1,789,479	-		Sama_1478	0.19	-0.1
1,789,502	+		Sama_1478	0.21	-1.4
1,789,502	+		Sama_1478	0.21	-0.6
1,789,503	-		Sama_1478	0.21	-0.3
1,789,503	-		Sama_1478	0.21	+1.7
1,789,619	+		Sama_1478	0.32	+0.3
1,789,628	+		Sama_1478	0.33	-0.1
1,789,628	+		Sama_1478	0.33	+0.2
1,789,628	+		Sama_1478	0.33	-1.8
1,789,628	+		Sama_1478	0.33	-0.6
1,789,628	+		Sama_1478	0.33	+0.6
1,789,628	+		Sama_1478	0.33	-0.1
1,789,629	-		Sama_1478	0.33	-1.0
1,789,629	-		Sama_1478	0.33	-0.2
1,789,629	-		Sama_1478	0.33	-1.1
1,789,629	-		Sama_1478	0.33	-0.3
1,789,629	-		Sama_1478	0.33	-0.3
1,789,630	+		Sama_1478	0.33	-0.6
1,789,630	+		Sama_1478	0.33	+0.3
1,789,630	+		Sama_1478	0.33	+0.2
1,789,631	-		Sama_1478	0.33	+1.0
1,789,631	-		Sama_1478	0.33	-1.5
1,789,631	-		Sama_1478	0.33	-1.9
1,789,631	-		Sama_1478	0.33	+1.1
1,789,631	-		Sama_1478	0.33	-0.6
1,789,631	-		Sama_1478	0.33	-1.6
1,789,631	-		Sama_1478	0.33	-0.3
1,789,677	+		Sama_1478	0.37	+0.4
1,789,678	-		Sama_1478	0.37	-1.3
1,789,683	+		Sama_1478	0.38	+0.7
1,789,683	+		Sama_1478	0.38	-1.1
1,789,684	-		Sama_1478	0.38	-1.6
1,789,684	-		Sama_1478	0.38	+1.3
1,789,737	+		Sama_1478	0.43	+0.2
1,789,738	-		Sama_1478	0.43	-0.7
1,789,763	+		Sama_1478	0.45	-1.0
1,789,763	+		Sama_1478	0.45	-1.3
1,789,763	+		Sama_1478	0.45	-0.9
1,789,763	+		Sama_1478	0.45	-0.6
1,789,763	+		Sama_1478	0.45	-0.2
1,789,764	-		Sama_1478	0.45	-0.8
1,789,766	-		Sama_1478	0.45	+1.4
1,789,771	+		Sama_1478	0.46	+0.7
1,789,786	+		Sama_1478	0.47	-0.8
1,789,786	+		Sama_1478	0.47	+0.2
1,789,786	+		Sama_1478	0.47	+1.2
1,789,789	+		Sama_1478	0.48	+1.4
1,789,840	+		Sama_1478	0.52	+0.7
1,789,840	+		Sama_1478	0.52	-0.4
1,789,841	-		Sama_1478	0.52	-0.3
1,789,909	+		Sama_1478	0.59	+0.2
1,789,914	-		Sama_1478	0.59	-1.6
1,789,921	+		Sama_1478	0.60	-0.1
1,789,943	+		Sama_1478	0.62	-1.2
1,789,958	-		Sama_1478	0.63	-1.3
1,789,978	+		Sama_1478	0.65	+0.2
1,789,978	+		Sama_1478	0.65	+1.2
1,789,978	+		Sama_1478	0.65	-0.1
1,789,987	-		Sama_1478	0.66	-0.8
1,790,005	-		Sama_1478	0.68	+0.4
1,790,087	+		Sama_1478	0.75	-0.7
1,790,087	+		Sama_1478	0.75	-0.1
1,790,088	-		Sama_1478	0.75	-0.4
1,790,117	+		Sama_1478	0.78	-0.1
1,790,118	-		Sama_1478	0.78	+0.2
1,790,119	+		Sama_1478	0.78	-1.1
1,790,119	+		Sama_1478	0.78	-0.4
1,790,120	-		Sama_1478	0.78	+0.6
1,790,126	-		Sama_1478	0.79	-0.4
1,790,149	+		Sama_1478	0.81	+1.2
1,790,171	-		Sama_1478	0.83	+0.3
1,790,200	+		Sama_1478	0.86	-0.6
1,790,200	+		Sama_1478	0.86	-0.6
1,790,201	-		Sama_1478	0.86	+0.2
1,790,202	+		Sama_1478	0.86	+0.2
1,790,259	+				+1.6
1,790,259	+				+2.2
1,790,327	+				+0.6
1,790,340	+				+0.9
1,790,340	+				-1.9
1,790,340	+				+1.4
1,790,358	+				+0.6
1,790,361	-				-0.3
1,790,405	+				+0.7
1,790,405	+				-0.8
1,790,405	+				-0.6
1,790,405	+				-1.0
1,790,407	+				-0.8
1,790,407	+				-1.0
1,790,407	+				-0.7
1,790,407	+				+0.6
1,790,407	+				-2.7
1,790,407	+				+0.2
1,790,407	+				-1.3
1,790,408	-				-1.3
1,790,412	+				-2.0
1,790,412	+				-1.0
1,790,466	-				-1.3
1,790,466	-				+0.9
1,790,466	-				+0.2
1,790,466	-				-0.3
1,790,484	-				+1.4
1,790,518	-		Sama_1479	0.11	-1.0
1,790,786	-				-1.1
1,790,899	-		Sama_1480	0.46	+0.2
1,790,902	-		Sama_1480	0.48	-0.8
1,790,902	-		Sama_1480	0.48	-0.1
1,790,954	-		Sama_1480	0.75	-1.5
1,790,954	-		Sama_1480	0.75	-0.7
1,790,960	-		Sama_1480	0.78	+1.2
1,790,993	-				-0.6
1,791,081	+				-0.8
1,791,100	+				-0.1
1,791,111	+				-1.3
1,791,111	+				+1.2
1,791,111	+				+0.1
1,791,113	+				+2.2
1,791,138	-				-0.1
1,791,138	-				-0.4
1,791,145	-				-1.3
1,791,145	-				-0.7
1,791,234	+				-0.2
1,791,235	-				+0.4