Strain Fitness in Shewanella amazonensis SB2B around Sama_1459

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,767,718	+		Sama_1457	0.70	+0.6
1,767,719	-		Sama_1457	0.70	+0.6
1,767,757	-		Sama_1457	0.77	+2.3
1,767,807	-		Sama_1457	0.87	-0.1
1,767,878	+				+1.7
1,767,879	-				-0.4
1,767,879	-				-1.6
1,767,888	+				+0.2
1,767,888	+				-0.6
1,767,927	+				-0.1
1,767,995	-				+0.2
1,768,024	-		Sama_1458	0.13	+0.7
1,768,061	-		Sama_1458	0.18	-2.3
1,768,101	+		Sama_1458	0.24	+2.7
1,768,102	-		Sama_1458	0.24	+1.2
1,768,102	-		Sama_1458	0.24	+0.4
1,768,212	+		Sama_1458	0.39	+0.7
1,768,212	+		Sama_1458	0.39	+0.7
1,768,213	-		Sama_1458	0.39	-1.8
1,768,213	-		Sama_1458	0.39	+0.2
1,768,242	+		Sama_1458	0.43	+1.4
1,768,242	+		Sama_1458	0.43	-0.6
1,768,301	+		Sama_1458	0.51	-1.0
1,768,314	+		Sama_1458	0.53	+2.0
1,768,314	+		Sama_1458	0.53	-1.2
1,768,371	+		Sama_1458	0.61	-0.4
1,768,372	-		Sama_1458	0.61	-0.3
1,768,452	+		Sama_1458	0.72	+0.2
1,768,453	-		Sama_1458	0.72	+0.2
1,768,533	-		Sama_1458	0.83	-0.6
1,768,563	+		Sama_1458	0.87	+0.6
1,768,564	-		Sama_1458	0.87	-0.1
1,768,614	+				+2.3
1,768,614	+				-0.4
1,768,614	+				-1.3
1,768,646	+				+0.4
1,768,666	-				-2.4
1,768,706	+				+0.6
1,768,706	+				+0.7
1,768,707	-				+0.4
1,768,710	+				-1.2
1,768,710	+				+1.5
1,768,711	-				+0.2
1,768,866	+		Sama_1459	0.31	+1.7
1,768,867	-		Sama_1459	0.31	+1.2
1,768,867	-		Sama_1459	0.31	-1.8
1,768,867	-		Sama_1459	0.31	-1.0
1,768,877	+		Sama_1459	0.33	-0.7
1,768,877	+		Sama_1459	0.33	-0.4
1,768,878	-		Sama_1459	0.33	-0.7
1,768,960	+		Sama_1459	0.46	-0.3
1,769,093	-		Sama_1459	0.68	-1.1
1,769,111	+		Sama_1459	0.71	-0.6
1,769,112	-		Sama_1459	0.71	-0.8
1,769,113	+		Sama_1459	0.71	-1.2
1,769,113	+		Sama_1459	0.71	-0.4
1,769,114	-		Sama_1459	0.71	-0.3
1,769,114	-		Sama_1459	0.71	-1.6
1,769,254	+				-0.6
1,769,254	+				+0.6
1,769,254	+				-0.2
1,769,254	+				-0.6
1,769,254	+				-1.3
1,769,254	+				-0.8
1,769,254	+				-0.1
1,769,255	-				-0.4
1,769,255	-				-0.3
1,769,255	-				-0.9
1,769,255	-				+0.9
1,769,255	-				-1.3
1,769,255	-				-0.1
1,769,255	-				-0.4
1,769,255	-				+0.2
1,769,280	-				+0.7
1,769,314	+				-2.2
1,769,315	-				-0.4
1,769,315	-				-1.3
1,769,320	-				+0.7
1,769,322	-				+2.7
1,769,355	+				+0.2
1,769,374	-				+0.2
1,769,394	+				-0.1
1,769,394	+				+0.4
1,769,394	+				-0.3
1,769,394	+				-0.6
1,769,395	-				-0.4
1,769,395	-				+0.2
1,769,465	-		Sama_1460	0.16	-0.4
1,769,528	+		Sama_1460	0.28	+0.6
1,769,528	+		Sama_1460	0.28	-0.3
1,769,529	-		Sama_1460	0.28	-0.3
1,769,529	-		Sama_1460	0.28	+0.8
1,769,529	-		Sama_1460	0.28	-0.7
1,769,556	-		Sama_1460	0.34	+0.4
1,769,578	-		Sama_1460	0.38	-0.6
1,769,629	+		Sama_1460	0.48	+2.3
1,769,630	-		Sama_1460	0.48	+1.7
1,769,661	+		Sama_1460	0.54	-0.1
1,769,661	+		Sama_1460	0.54	-0.1
1,769,661	+		Sama_1460	0.54	+0.4
1,769,661	+		Sama_1460	0.54	+0.4
1,769,662	-		Sama_1460	0.55	-0.1
1,769,662	-		Sama_1460	0.55	+0.2
1,769,662	-		Sama_1460	0.55	+0.7
1,769,667	-		Sama_1460	0.55	-0.1
1,769,685	-		Sama_1460	0.59	+0.3
1,769,687	+		Sama_1460	0.59	+0.2
1,769,699	+		Sama_1460	0.62	-0.3
1,769,865	+				-0.7
1,769,937	+				+1.4
1,770,010	+				-0.8
1,770,011	-				+0.4
1,770,011	-				-1.5
1,770,043	-				-1.1
1,770,145	+		Sama_1461	0.10	-0.6
1,770,146	-		Sama_1461	0.11	-0.6
1,770,146	-		Sama_1461	0.11	+0.3
1,770,146	-		Sama_1461	0.11	+1.7
1,770,146	-		Sama_1461	0.11	-0.1
1,770,189	+		Sama_1461	0.17	-0.7
1,770,205	+		Sama_1461	0.20	-0.3