Strain Fitness in Shewanella amazonensis SB2B around Sama_1405

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,706,262	+		Sama_1404	0.86	-0.8
1,706,402	+				+0.7
1,706,403	-				-0.2
1,706,685	+				-0.9
1,706,685	+				-0.1
1,706,685	+				-2.2
1,706,686	-				-0.1
1,706,755	+				+1.1
1,706,755	+				+0.0
1,706,755	+				+1.1
1,706,755	+				-0.1
1,706,770	+				+1.7
1,706,770	+				-0.7
1,706,770	+				-0.5
1,706,771	-				+1.4
1,706,774	+				-0.0
1,706,774	+				-0.2
1,706,775	-				+0.1
1,706,788	-		Sama_1405	0.11	-1.1
1,706,870	+		Sama_1405	0.20	-1.1
1,706,870	+		Sama_1405	0.20	-1.8
1,706,905	+		Sama_1405	0.24	-0.4
1,706,905	+		Sama_1405	0.24	+1.1
1,706,948	+		Sama_1405	0.29	+0.1
1,707,056	-		Sama_1405	0.40	-1.0
1,707,102	-		Sama_1405	0.45	-0.2
1,707,102	-		Sama_1405	0.45	-0.4
1,707,112	+		Sama_1405	0.46	-1.1
1,707,112	+		Sama_1405	0.46	+1.7
1,707,113	-		Sama_1405	0.46	-0.9
1,707,113	-		Sama_1405	0.46	-1.5
1,707,113	-		Sama_1405	0.46	+0.9
1,707,113	-		Sama_1405	0.46	+0.5
1,707,113	-		Sama_1405	0.46	-1.2
1,707,185	+		Sama_1405	0.54	-1.3
1,707,185	+		Sama_1405	0.54	-0.9
1,707,186	-		Sama_1405	0.54	+0.4
1,707,186	-		Sama_1405	0.54	+0.8
1,707,357	-		Sama_1405	0.72	-1.5
1,707,389	+		Sama_1405	0.76	-1.9
1,707,415	+		Sama_1405	0.79	-1.8
1,707,416	-		Sama_1405	0.79	-0.8
1,707,453	+		Sama_1405	0.83	+0.0
1,707,453	+		Sama_1405	0.83	-0.2
1,707,453	+		Sama_1405	0.83	-2.4
1,707,454	-		Sama_1405	0.83	-0.1
1,707,459	+		Sama_1405	0.83	-1.2
1,707,459	+		Sama_1405	0.83	+0.1
1,707,460	-		Sama_1405	0.83	-0.8
1,707,483	+		Sama_1405	0.86	+1.1
1,707,483	+		Sama_1405	0.86	-1.1
1,707,483	+		Sama_1405	0.86	+0.0
1,707,483	+		Sama_1405	0.86	+0.4
1,707,483	+		Sama_1405	0.86	+1.3
1,707,483	+		Sama_1405	0.86	-1.4
1,707,483	+		Sama_1405	0.86	-0.1
1,707,483	+		Sama_1405	0.86	-2.2
1,707,484	-		Sama_1405	0.86	-1.1
1,707,484	-		Sama_1405	0.86	+0.4
1,707,612	+				-0.6
1,707,612	+				+0.1
1,707,612	+				+0.3
1,707,613	-				+0.7
1,707,613	-				-0.6
1,707,613	-				+0.1
1,707,616	+				+0.7
1,707,616	+				+1.1
1,707,616	+				-2.0
1,707,616	+				-2.8
1,707,628	+				+5.4
1,707,628	+				-1.8
1,707,629	-				+0.1
1,707,638	+				-1.0
1,707,639	-				+2.0
1,707,670	+				-2.0
1,707,683	+				+0.5
1,707,684	-				-0.9
1,707,706	+				+0.1
1,707,706	+				-0.1
1,707,706	+				-0.9
1,707,706	+				+1.3
1,707,706	+				-0.5
1,707,707	-				+0.8
1,707,707	-				-1.7
1,707,714	+				+0.5
1,707,714	+				+0.9
1,707,714	+				-1.0
1,707,714	+				+1.1
1,707,714	+				-0.5
1,707,715	-				-2.2
1,707,805	+				-0.9
1,707,806	-				-1.2
1,707,936	+				-0.5
1,707,936	+				-0.9
1,707,937	-				-0.3
1,707,937	-				-0.6
1,707,937	-				+0.2
1,708,078	+		Sama_1406	0.21	-1.7
1,708,078	+		Sama_1406	0.21	+0.4
1,708,198	+		Sama_1406	0.34	-0.5
1,708,198	+		Sama_1406	0.34	+0.5
1,708,222	+		Sama_1406	0.37	+0.1
1,708,222	+		Sama_1406	0.37	-1.0
1,708,235	+		Sama_1406	0.38	-0.8
1,708,235	+		Sama_1406	0.38	-0.9
1,708,235	+		Sama_1406	0.38	-1.3
1,708,236	-		Sama_1406	0.38	+0.1
1,708,236	-		Sama_1406	0.38	+0.4
1,708,236	-		Sama_1406	0.38	-2.1
1,708,237	+		Sama_1406	0.38	-0.8
1,708,238	-		Sama_1406	0.38	-0.3
1,708,292	-		Sama_1406	0.44	-1.3
1,708,328	+		Sama_1406	0.48	+1.1
1,708,329	-		Sama_1406	0.48	+0.7
1,708,411	+		Sama_1406	0.57	-1.0
1,708,411	+		Sama_1406	0.57	+0.4
1,708,411	+		Sama_1406	0.57	+0.7
1,708,411	+		Sama_1406	0.57	+0.8
1,708,411	+		Sama_1406	0.57	-1.3
1,708,411	+		Sama_1406	0.57	-0.6
1,708,412	-		Sama_1406	0.57	-0.5
1,708,412	-		Sama_1406	0.57	-0.2
1,708,412	-		Sama_1406	0.57	+1.7
1,708,412	-		Sama_1406	0.57	+1.5
1,708,412	-		Sama_1406	0.57	-1.8
1,708,412	-		Sama_1406	0.57	-0.8
1,708,412	-		Sama_1406	0.57	-0.6
1,708,412	-		Sama_1406	0.57	-0.1
1,708,413	+		Sama_1406	0.57	-1.5
1,708,413	+		Sama_1406	0.57	-0.3
1,708,413	+		Sama_1406	0.57	-0.5
1,708,413	+		Sama_1406	0.57	-0.4
1,708,413	+		Sama_1406	0.57	-1.1
1,708,413	+		Sama_1406	0.57	+0.1
1,708,414	-		Sama_1406	0.57	-0.8
1,708,414	-		Sama_1406	0.57	+0.2
1,708,430	+		Sama_1406	0.59	-2.5
1,708,576	+		Sama_1406	0.74	-0.8
1,708,576	+		Sama_1406	0.74	+3.1
1,708,576	+		Sama_1406	0.74	-0.2
1,708,576	+		Sama_1406	0.74	-0.5
1,708,576	+		Sama_1406	0.74	-0.9
1,708,595	+		Sama_1406	0.76	+0.2
1,708,595	+		Sama_1406	0.76	+0.7
1,708,596	-		Sama_1406	0.76	+1.7
1,708,596	-		Sama_1406	0.76	+1.1
1,708,597	+		Sama_1406	0.77	-0.1
1,708,598	-		Sama_1406	0.77	-0.4