Strain Fitness in Shewanella amazonensis SB2B around Sama_1136

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,383,768	+	purU	Sama_1134	0.60	-0.7
1,383,822	+	purU	Sama_1134	0.67	-0.2
1,383,822	+	purU	Sama_1134	0.67	-1.8
1,383,822	+	purU	Sama_1134	0.67	-0.0
1,383,822	+	purU	Sama_1134	0.67	+0.2
1,383,823	-	purU	Sama_1134	0.67	-0.0
1,383,849	+	purU	Sama_1134	0.70	-0.8
1,383,896	+	purU	Sama_1134	0.75	-1.0
1,383,925	-	purU	Sama_1134	0.79	-1.0
1,383,945	+	purU	Sama_1134	0.81	-1.0
1,383,945	+	purU	Sama_1134	0.81	-1.8
1,383,945	+	purU	Sama_1134	0.81	+0.8
1,383,946	-	purU	Sama_1134	0.81	-0.1
1,383,982	+	purU	Sama_1134	0.85	+0.5
1,383,982	+	purU	Sama_1134	0.85	-1.1
1,383,982	+	purU	Sama_1134	0.85	+0.9
1,383,982	+	purU	Sama_1134	0.85	-0.5
1,383,983	-	purU	Sama_1134	0.86	-0.2
1,383,983	-	purU	Sama_1134	0.86	-1.9
1,383,983	-	purU	Sama_1134	0.86	+0.5
1,384,147	-				-0.4
1,384,147	-				-0.4
1,384,160	+				-0.0
1,384,164	+				-0.2
1,384,165	-				+1.8
1,384,165	-				-1.7
1,384,165	-				-0.9
1,384,165	-				+0.2
1,384,165	-				-0.9
1,384,165	-				+1.8
1,384,165	-				+0.8
1,384,165	-				-0.0
1,384,208	+		Sama_1135	0.18	-1.4
1,384,208	+		Sama_1135	0.18	-0.2
1,384,208	+		Sama_1135	0.18	-0.0
1,384,208	+		Sama_1135	0.18	-0.1
1,384,208	+		Sama_1135	0.18	-1.9
1,384,209	-		Sama_1135	0.18	+0.2
1,384,209	-		Sama_1135	0.18	-0.5
1,384,209	-		Sama_1135	0.18	-1.7
1,384,214	-		Sama_1135	0.20	+1.8
1,384,279	-		Sama_1135	0.39	-1.2
1,384,279	-		Sama_1135	0.39	+0.7
1,384,387	+		Sama_1135	0.70	-0.0
1,384,387	+		Sama_1135	0.70	+0.7
1,384,388	-		Sama_1135	0.70	-0.2
1,384,391	+		Sama_1135	0.71	+1.1
1,384,392	-		Sama_1135	0.71	+1.6
1,384,457	+		Sama_1135	0.90	-0.8
1,384,457	+		Sama_1135	0.90	-0.7
1,384,458	-				-0.4
1,384,458	-				-0.0
1,384,458	-				-0.8
1,384,484	+				+0.2
1,384,485	-				-0.7
1,384,485	-				+0.8
1,384,510	+				-0.4
1,384,511	-				+0.2
1,384,511	-				-0.6
1,384,511	-				-1.0
1,384,527	+				-1.0
1,384,527	+				-0.7
1,384,527	+				+0.7
1,384,528	-				+2.8
1,384,542	-				-0.3
1,384,603	+				+1.1
1,384,603	+				+1.1
1,384,604	-				+0.5
1,384,604	-				-1.0
1,384,604	-				+2.8
1,384,604	-				-2.2
1,384,604	-				+2.8
1,384,604	-				-0.2
1,384,604	-				-1.8
1,384,687	+				-1.5
1,384,752	-				-1.9
1,384,752	-				+1.8
1,385,832	+				+6.3
1,385,839	-				+7.2
1,386,041	+		Sama_1137	0.17	+6.0
1,386,042	-		Sama_1137	0.17	+8.4
1,386,152	-		Sama_1137	0.21	+4.1
1,386,152	-		Sama_1137	0.21	+7.6
1,386,442	+		Sama_1137	0.32	+10.2
1,386,443	-		Sama_1137	0.32	+5.0
1,386,489	+		Sama_1137	0.34	+5.3
1,386,490	-		Sama_1137	0.34	+6.2
1,386,490	-		Sama_1137	0.34	+5.1
1,386,490	-		Sama_1137	0.34	+4.5
1,386,510	-		Sama_1137	0.35	+2.9
1,386,515	+		Sama_1137	0.35	+2.0
1,386,515	+		Sama_1137	0.35	+2.2
1,386,516	-		Sama_1137	0.35	+1.5