Strain Fitness in Shewanella amazonensis SB2B around Sama_1133

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,380,827	+				-1.5
1,380,827	+				-0.0
1,380,827	+				+1.8
1,380,827	+				+6.4
1,380,827	+				-2.1
1,380,828	-				-2.2
1,380,902	-				-0.6
1,380,902	-				-1.5
1,381,011	+				+0.6
1,381,033	+				+0.4
1,381,033	+				+2.2
1,381,033	+				-1.0
1,381,033	+				+1.5
1,381,034	-				-1.8
1,381,034	-				-0.9
1,381,086	+				+0.2
1,381,087	-				+0.2
1,381,087	-				-0.4
1,381,093	+				+1.2
1,381,093	+				+2.0
1,381,093	+				-1.9
1,381,093	+				-1.5
1,381,124	+				+0.2
1,381,124	+				+4.4
1,381,125	-				-0.5
1,381,157	+				-1.0
1,381,158	-				-0.3
1,381,172	-				+0.5
1,381,205	+				-0.6
1,381,206	-				-0.4
1,381,247	+				-1.5
1,381,304	+		Sama_1132	0.19	-0.8
1,381,306	+		Sama_1132	0.20	+0.9
1,381,306	+		Sama_1132	0.20	-1.2
1,381,306	+		Sama_1132	0.20	+0.6
1,381,306	+		Sama_1132	0.20	+0.6
1,381,307	-		Sama_1132	0.20	-0.4
1,381,307	-		Sama_1132	0.20	-1.2
1,381,307	-		Sama_1132	0.20	-0.7
1,381,355	-		Sama_1132	0.30	-1.4
1,381,427	+		Sama_1132	0.46	+0.0
1,381,428	-		Sama_1132	0.46	-0.8
1,381,455	-		Sama_1132	0.52	-0.5
1,381,473	-		Sama_1132	0.56	+0.8
1,381,473	-		Sama_1132	0.56	+0.3
1,381,502	+		Sama_1132	0.62	-0.5
1,381,547	-		Sama_1132	0.72	+0.9
1,381,617	+		Sama_1132	0.87	+1.0
1,381,676	+				-1.3
1,381,676	+				-2.0
1,381,748	+				-0.9
1,381,748	+				-0.1
1,381,749	-				-1.9
1,381,772	+				-0.1
1,381,782	+				-0.5
1,381,783	-				-1.1
1,381,783	-				-1.5
1,381,783	-				-0.7
1,381,785	+				-0.0
1,381,786	-				-1.7
1,381,786	-				+1.2
1,381,857	+		Sama_1133	0.15	-0.1
1,381,857	+		Sama_1133	0.15	-2.2
1,381,857	+		Sama_1133	0.15	-0.9
1,381,857	+		Sama_1133	0.15	+0.2
1,381,858	-		Sama_1133	0.15	-0.9
1,381,858	-		Sama_1133	0.15	+0.1
1,381,858	-		Sama_1133	0.15	-2.6
1,381,957	-		Sama_1133	0.22	+0.2
1,381,981	+		Sama_1133	0.23	+0.8
1,381,981	+		Sama_1133	0.23	-0.1
1,382,000	+		Sama_1133	0.25	-0.7
1,382,000	+		Sama_1133	0.25	-0.7
1,382,000	+		Sama_1133	0.25	-1.2
1,382,000	+		Sama_1133	0.25	+0.5
1,382,000	+		Sama_1133	0.25	-0.8
1,382,000	+		Sama_1133	0.25	+2.8
1,382,000	+		Sama_1133	0.25	-0.2
1,382,000	+		Sama_1133	0.25	+2.2
1,382,000	+		Sama_1133	0.25	+0.3
1,382,000	+		Sama_1133	0.25	-0.0
1,382,001	-		Sama_1133	0.25	-0.0
1,382,001	-		Sama_1133	0.25	-0.2
1,382,001	-		Sama_1133	0.25	-1.1
1,382,001	-		Sama_1133	0.25	+0.5
1,382,001	-		Sama_1133	0.25	-0.2
1,382,001	-		Sama_1133	0.25	-0.8
1,382,001	-		Sama_1133	0.25	-0.2
1,382,001	-		Sama_1133	0.25	+1.5
1,382,021	+		Sama_1133	0.26	-0.4
1,382,021	+		Sama_1133	0.26	-0.8
1,382,021	+		Sama_1133	0.26	+1.5
1,382,021	+		Sama_1133	0.26	+1.0
1,382,021	+		Sama_1133	0.26	-0.8
1,382,021	+		Sama_1133	0.26	-1.5
1,382,021	+		Sama_1133	0.26	-1.0
1,382,021	+		Sama_1133	0.26	-1.4
1,382,021	+		Sama_1133	0.26	-1.0
1,382,021	+		Sama_1133	0.26	+0.5
1,382,022	-		Sama_1133	0.26	-1.0
1,382,022	-		Sama_1133	0.26	-1.0
1,382,022	-		Sama_1133	0.26	-0.9
1,382,022	-		Sama_1133	0.26	+2.2
1,382,022	-		Sama_1133	0.26	-0.0
1,382,022	-		Sama_1133	0.26	-1.6
1,382,025	+		Sama_1133	0.26	+0.3
1,382,026	-		Sama_1133	0.26	+1.2
1,382,048	+		Sama_1133	0.28	-0.2
1,382,048	+		Sama_1133	0.28	-0.7
1,382,048	+		Sama_1133	0.28	-2.1
1,382,061	+		Sama_1133	0.29	-1.5
1,382,061	+		Sama_1133	0.29	-1.3
1,382,147	+		Sama_1133	0.35	-1.0
1,382,147	+		Sama_1133	0.35	-2.2
1,382,148	-		Sama_1133	0.35	-0.4
1,382,190	+		Sama_1133	0.38	-1.4
1,382,243	-		Sama_1133	0.41	-0.8
1,382,243	-		Sama_1133	0.41	-0.0
1,382,272	+		Sama_1133	0.43	+2.5
1,382,272	+		Sama_1133	0.43	-0.5
1,382,277	+		Sama_1133	0.44	-0.8
1,382,336	-		Sama_1133	0.48	+0.6
1,382,353	+		Sama_1133	0.49	-0.9
1,382,353	+		Sama_1133	0.49	+0.6
1,382,353	+		Sama_1133	0.49	-1.8
1,382,353	+		Sama_1133	0.49	-2.1
1,382,354	-		Sama_1133	0.49	-1.5
1,382,354	-		Sama_1133	0.49	-0.2
1,382,354	-		Sama_1133	0.49	-0.4
1,382,376	-		Sama_1133	0.50	+0.8
1,382,396	-		Sama_1133	0.52	-1.7
1,382,445	+		Sama_1133	0.55	+1.8
1,382,480	+		Sama_1133	0.57	-1.6
1,382,498	+		Sama_1133	0.59	-0.5
1,382,531	+		Sama_1133	0.61	+0.6
1,382,531	+		Sama_1133	0.61	-2.5
1,382,531	+		Sama_1133	0.61	+0.5
1,382,531	+		Sama_1133	0.61	+0.2
1,382,531	+		Sama_1133	0.61	-0.2
1,382,531	+		Sama_1133	0.61	-0.0
1,382,531	+		Sama_1133	0.61	-0.4
1,382,644	+		Sama_1133	0.69	-0.1
1,382,644	+		Sama_1133	0.69	-0.9
1,382,667	+		Sama_1133	0.70	+0.5
1,382,667	+		Sama_1133	0.70	-0.7
1,382,667	+		Sama_1133	0.70	+0.5
1,382,667	+		Sama_1133	0.70	-0.6
1,382,667	+		Sama_1133	0.70	-0.3
1,382,667	+		Sama_1133	0.70	-0.6
1,382,668	-		Sama_1133	0.70	-0.7
1,382,734	-		Sama_1133	0.75	-0.5
1,382,736	+		Sama_1133	0.75	-0.9
1,382,736	+		Sama_1133	0.75	+0.3
1,382,737	-		Sama_1133	0.75	-0.2
1,382,779	+		Sama_1133	0.78	+0.2
1,382,780	-		Sama_1133	0.78	-1.5
1,382,802	+		Sama_1133	0.80	+0.3
1,382,802	+		Sama_1133	0.80	-0.5
1,382,803	-		Sama_1133	0.80	-0.2
1,382,915	+		Sama_1133	0.87	-1.5
1,382,915	+		Sama_1133	0.87	-1.7
1,382,915	+		Sama_1133	0.87	-0.5
1,382,916	-		Sama_1133	0.87	+0.2
1,382,942	+		Sama_1133	0.89	-0.0
1,382,966	+				-0.5
1,382,966	+				-0.5
1,382,966	+				-0.2
1,382,967	-				-1.7
1,382,982	-				-0.7
1,383,009	-				-1.3
1,383,043	-				-0.4
1,383,059	+				-0.0
1,383,060	-				-1.2
1,383,087	+				+2.1
1,383,088	-				+0.8
1,383,088	-				+0.8
1,383,094	-				-0.2
1,383,210	+				-0.8
1,383,239	-				-1.8
1,383,247	+				-0.2
1,383,387	+	purU	Sama_1134	0.15	-0.0
1,383,390	+	purU	Sama_1134	0.15	-0.5
1,383,390	+	purU	Sama_1134	0.15	-2.0
1,383,414	+	purU	Sama_1134	0.18	-1.2
1,383,434	+	purU	Sama_1134	0.21	+1.5
1,383,434	+	purU	Sama_1134	0.21	-0.0
1,383,434	+	purU	Sama_1134	0.21	-1.7
1,383,435	-	purU	Sama_1134	0.21	+0.2
1,383,498	+	purU	Sama_1134	0.28	+0.5
1,383,499	-	purU	Sama_1134	0.28	-0.7
1,383,499	-	purU	Sama_1134	0.28	-0.1
1,383,513	+	purU	Sama_1134	0.30	-0.2
1,383,513	+	purU	Sama_1134	0.30	-1.3
1,383,563	+	purU	Sama_1134	0.36	+0.2
1,383,563	+	purU	Sama_1134	0.36	-1.2
1,383,563	+	purU	Sama_1134	0.36	+0.5
1,383,563	+	purU	Sama_1134	0.36	-0.4
1,383,564	-	purU	Sama_1134	0.36	-0.4
1,383,564	-	purU	Sama_1134	0.36	-0.5
1,383,577	+	purU	Sama_1134	0.38	+0.3
1,383,577	+	purU	Sama_1134	0.38	-3.2
1,383,577	+	purU	Sama_1134	0.38	+0.8
1,383,577	+	purU	Sama_1134	0.38	-0.0
1,383,578	-	purU	Sama_1134	0.38	+0.2
1,383,578	-	purU	Sama_1134	0.38	-1.9
1,383,578	-	purU	Sama_1134	0.38	-0.7
1,383,580	+	purU	Sama_1134	0.38	-0.3
1,383,581	-	purU	Sama_1134	0.38	-1.6
1,383,600	+	purU	Sama_1134	0.40	+0.8
1,383,600	+	purU	Sama_1134	0.40	-0.5
1,383,619	-	purU	Sama_1134	0.43	+0.9
1,383,622	+	purU	Sama_1134	0.43	-0.2
1,383,627	+	purU	Sama_1134	0.43	-1.8
1,383,670	+	purU	Sama_1134	0.49	-0.3
1,383,670	+	purU	Sama_1134	0.49	+0.8
1,383,671	-	purU	Sama_1134	0.49	-0.9
1,383,671	-	purU	Sama_1134	0.49	+0.2
1,383,671	-	purU	Sama_1134	0.49	-0.4
1,383,671	-	purU	Sama_1134	0.49	-0.2
1,383,737	-	purU	Sama_1134	0.57	-0.5
1,383,748	+	purU	Sama_1134	0.58	+1.0
1,383,768	+	purU	Sama_1134	0.60	-0.7
1,383,822	+	purU	Sama_1134	0.67	-0.2
1,383,822	+	purU	Sama_1134	0.67	-1.8
1,383,822	+	purU	Sama_1134	0.67	-0.0
1,383,822	+	purU	Sama_1134	0.67	+0.2
1,383,823	-	purU	Sama_1134	0.67	-0.0
1,383,849	+	purU	Sama_1134	0.70	-0.8
1,383,896	+	purU	Sama_1134	0.75	-1.0
1,383,925	-	purU	Sama_1134	0.79	-1.0
1,383,945	+	purU	Sama_1134	0.81	-1.0
1,383,945	+	purU	Sama_1134	0.81	-1.8
1,383,945	+	purU	Sama_1134	0.81	+0.8
1,383,946	-	purU	Sama_1134	0.81	-0.1
1,383,982	+	purU	Sama_1134	0.85	+0.5
1,383,982	+	purU	Sama_1134	0.85	-1.1
1,383,982	+	purU	Sama_1134	0.85	+0.9
1,383,982	+	purU	Sama_1134	0.85	-0.5
1,383,983	-	purU	Sama_1134	0.86	-0.2
1,383,983	-	purU	Sama_1134	0.86	-1.9
1,383,983	-	purU	Sama_1134	0.86	+0.5