Strain Fitness in Shewanella amazonensis SB2B around Sama_1106

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,340,395	+		Sama_1105	0.78	+0.2
1,340,395	+		Sama_1105	0.78	-2.0
1,340,395	+		Sama_1105	0.78	-0.2
1,340,396	-		Sama_1105	0.78	-1.2
1,340,396	-		Sama_1105	0.78	+0.0
1,340,396	-		Sama_1105	0.78	+0.7
1,340,445	+		Sama_1105	0.80	+0.4
1,340,469	-		Sama_1105	0.80	-0.2
1,340,469	-		Sama_1105	0.80	-0.7
1,340,474	+		Sama_1105	0.81	-0.5
1,340,496	-		Sama_1105	0.81	-0.9
1,340,542	+		Sama_1105	0.83	-0.1
1,340,542	+		Sama_1105	0.83	+2.4
1,340,542	+		Sama_1105	0.83	-0.5
1,340,543	-		Sama_1105	0.83	+0.8
1,340,543	-		Sama_1105	0.83	+0.0
1,340,543	-		Sama_1105	0.83	-0.8
1,340,567	+		Sama_1105	0.83	-0.6
1,340,567	+		Sama_1105	0.83	+0.0
1,340,581	+		Sama_1105	0.84	+0.1
1,340,582	-		Sama_1105	0.84	+0.0
1,340,691	+		Sama_1105	0.87	-1.1
1,340,691	+		Sama_1105	0.87	-2.2
1,340,691	+		Sama_1105	0.87	-0.2
1,340,691	+		Sama_1105	0.87	-1.7
1,340,691	+		Sama_1105	0.87	+0.0
1,340,691	+		Sama_1105	0.87	-0.8
1,340,691	+		Sama_1105	0.87	-0.6
1,340,691	+		Sama_1105	0.87	-1.7
1,340,691	+		Sama_1105	0.87	-1.0
1,340,691	+		Sama_1105	0.87	+0.2
1,340,691	+		Sama_1105	0.87	-1.5
1,340,692	-		Sama_1105	0.87	-0.3
1,340,692	-		Sama_1105	0.87	-0.2
1,340,692	-		Sama_1105	0.87	-1.0
1,340,692	-		Sama_1105	0.87	-0.7
1,340,745	+		Sama_1105	0.88	+0.8
1,340,745	+		Sama_1105	0.88	-2.6
1,340,745	+		Sama_1105	0.88	-2.4
1,340,745	+		Sama_1105	0.88	-0.3
1,340,746	-		Sama_1105	0.88	-0.9
1,340,746	-		Sama_1105	0.88	-0.2
1,340,746	-		Sama_1105	0.88	+0.5
1,340,746	-		Sama_1105	0.88	-1.4
1,340,746	-		Sama_1105	0.88	-2.0
1,340,867	-				+0.7
1,340,889	+				-1.1
1,340,889	+				+0.6
1,340,890	-				-0.3
1,340,916	-				-0.7
1,340,916	-				-1.0
1,340,962	-				+0.4
1,340,962	-				+0.5
1,340,999	+				+1.3
1,340,999	+				+0.5
1,341,000	-				-1.2
1,341,063	+				-1.0
1,341,064	-				+0.0
1,341,094	-				+0.0
1,341,196	-				-0.5
1,341,213	+				-0.4
1,341,214	-				-0.7
1,341,214	-				+0.3
1,341,221	+				+0.3
1,341,272	+				-2.1
1,341,343	-				-0.1
1,341,395	-				+0.3
1,341,395	-				+0.0
1,341,462	+		Sama_1106	0.19	-0.7
1,341,462	+		Sama_1106	0.19	-0.6
1,341,463	-		Sama_1106	0.19	-0.6
1,341,487	-		Sama_1106	0.24	-0.7
1,341,520	+		Sama_1106	0.31	-0.3
1,341,521	-		Sama_1106	0.32	+0.8
1,341,667	+		Sama_1106	0.64	+0.6
1,341,685	+		Sama_1106	0.68	-0.6
1,341,687	+		Sama_1106	0.68	-0.5
1,341,688	-		Sama_1106	0.68	+0.3
1,341,688	-		Sama_1106	0.68	-0.7
1,341,688	-		Sama_1106	0.68	+0.8
1,341,688	-		Sama_1106	0.68	+0.0
1,341,759	+		Sama_1106	0.84	-1.6
1,341,759	+		Sama_1106	0.84	-0.7
1,341,759	+		Sama_1106	0.84	-0.5
1,341,760	-		Sama_1106	0.84	-0.2
1,341,760	-		Sama_1106	0.84	-1.1
1,341,760	-		Sama_1106	0.84	+0.0
1,341,760	-		Sama_1106	0.84	-0.2
1,341,760	-		Sama_1106	0.84	-0.2
1,341,785	+		Sama_1106	0.89	-1.0
1,341,786	-		Sama_1106	0.90	-0.3
1,341,826	+				-2.1
1,341,836	+				-1.9
1,341,836	+				+1.3
1,341,836	+				+2.3
1,341,837	-				+1.5
1,341,837	-				+1.3
1,341,837	-				-0.6
1,341,839	+				+1.4
1,341,840	-				-0.3
1,341,840	-				+0.2
1,341,840	-				-0.7
1,341,840	-				+0.8
1,341,850	-				-0.0
1,341,902	+				+1.2
1,341,903	-				+1.3
1,341,936	+				+0.7
1,341,937	-				-0.2
1,342,000	+				-1.6
1,342,040	-				+1.3
1,342,117	+				+0.3
1,342,117	+				-0.2
1,342,118	-				+1.5
1,342,118	-				+0.5
1,342,182	-				+0.8
1,342,202	+				-1.9
1,342,202	+				+0.0
1,342,202	+				+1.5
1,342,203	-				+0.8
1,342,236	+				-0.5
1,342,236	+				-0.6
1,342,237	-				-0.9
1,342,239	+				+0.3
1,342,240	-				+1.8
1,342,240	-				-0.5
1,342,261	+				+0.3
1,342,262	-				-2.2
1,342,262	-				+0.4
1,342,379	+		Sama_1107	0.27	+2.8
1,342,379	+		Sama_1107	0.27	+0.4
1,342,380	-		Sama_1107	0.27	-0.4
1,342,380	-		Sama_1107	0.27	-1.1
1,342,438	+		Sama_1107	0.37	-1.5
1,342,562	+		Sama_1107	0.57	-0.7
1,342,562	+		Sama_1107	0.57	+0.8
1,342,650	+		Sama_1107	0.72	-1.4
1,342,651	-		Sama_1107	0.72	-1.1
1,342,651	-		Sama_1107	0.72	-0.7
1,342,651	-		Sama_1107	0.72	-0.3
1,342,651	-		Sama_1107	0.72	-0.9
1,342,680	+		Sama_1107	0.77	-1.2
1,342,681	-		Sama_1107	0.77	-0.7
1,342,681	-		Sama_1107	0.77	-1.1
1,342,681	-		Sama_1107	0.77	-1.2
1,342,693	+		Sama_1107	0.79	-1.1
1,342,693	+		Sama_1107	0.79	+0.5
1,342,693	+		Sama_1107	0.79	+2.0
1,342,694	-		Sama_1107	0.80	+0.7
1,342,694	-		Sama_1107	0.80	+0.5
1,342,707	+		Sama_1107	0.82	-0.1
1,342,707	+		Sama_1107	0.82	-0.4
1,342,708	-		Sama_1107	0.82	+1.8
1,342,708	-		Sama_1107	0.82	-1.4
1,342,712	+		Sama_1107	0.82	-1.7