Strain Fitness in Shewanella amazonensis SB2B around Sama_1100

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,323,536	+				-0.1
1,323,537	-				+2.4
1,323,537	-				-0.6
1,323,613	-				-0.7
1,323,621	+				-2.6
1,323,655	-				+0.6
1,323,658	+				-1.0
1,323,673	+				+1.5
1,323,727	-		Sama_1099	0.15	+0.0
1,323,749	+		Sama_1099	0.18	+0.6
1,323,749	+		Sama_1099	0.18	-0.1
1,323,750	-		Sama_1099	0.18	-1.1
1,323,754	-		Sama_1099	0.18	-0.8
1,323,768	+		Sama_1099	0.20	-2.0
1,323,768	+		Sama_1099	0.20	-2.4
1,323,769	-		Sama_1099	0.20	-0.6
1,323,794	-		Sama_1099	0.23	-0.3
1,323,815	-		Sama_1099	0.25	+0.9
1,323,837	-		Sama_1099	0.27	-0.8
1,323,924	+		Sama_1099	0.37	-1.0
1,323,925	-		Sama_1099	0.37	-0.6
1,323,925	-		Sama_1099	0.37	-0.5
1,323,967	+		Sama_1099	0.42	+1.9
1,323,967	+		Sama_1099	0.42	-0.3
1,323,967	+		Sama_1099	0.42	+0.6
1,323,967	+		Sama_1099	0.42	-0.7
1,323,967	+		Sama_1099	0.42	-0.7
1,323,967	+		Sama_1099	0.42	-0.1
1,323,967	+		Sama_1099	0.42	-2.2
1,323,968	-		Sama_1099	0.42	-1.6
1,324,015	-		Sama_1099	0.47	-0.3
1,324,015	-		Sama_1099	0.47	-1.8
1,324,073	+		Sama_1099	0.54	-1.0
1,324,091	+		Sama_1099	0.56	-1.1
1,324,091	+		Sama_1099	0.56	-0.3
1,324,091	+		Sama_1099	0.56	+2.2
1,324,091	+		Sama_1099	0.56	-0.1
1,324,092	-		Sama_1099	0.56	-0.3
1,324,092	-		Sama_1099	0.56	-1.0
1,324,121	+		Sama_1099	0.59	+0.3
1,324,121	+		Sama_1099	0.59	-0.5
1,324,122	-		Sama_1099	0.59	+0.9
1,324,122	-		Sama_1099	0.59	+0.7
1,324,122	-		Sama_1099	0.59	+0.7
1,324,171	+		Sama_1099	0.65	+0.9
1,324,172	-		Sama_1099	0.65	-2.0
1,324,172	-		Sama_1099	0.65	+1.5
1,324,265	+		Sama_1099	0.75	+0.5
1,324,266	-		Sama_1099	0.76	-0.3
1,324,266	-		Sama_1099	0.76	-0.3
1,324,274	+		Sama_1099	0.76	-1.1
1,324,378	+		Sama_1099	0.88	-0.1
1,324,379	-		Sama_1099	0.88	-0.8
1,324,481	+				+0.3
1,324,481	+				+0.0
1,324,481	+				-2.6
1,324,481	+				-0.2
1,324,481	+				-0.7
1,324,482	-				+0.9
1,324,482	-				-1.7
1,324,482	-				+0.3
1,324,491	+				+0.9
1,324,650	+		Sama_1100	0.40	-0.5
1,324,663	-		Sama_1100	0.43	-1.3
1,324,669	-		Sama_1100	0.44	-1.5
1,324,873	+				-1.3
1,324,873	+				-0.3
1,324,874	-				-1.4
1,324,874	-				-0.7
1,324,874	-				-1.4
1,324,874	-				+0.9
1,324,874	-				-0.3
1,324,874	-				-1.1
1,324,909	-				+0.4
1,324,909	-				-1.4
1,324,937	+				-1.1
1,324,938	-				+0.4
1,324,938	-				+0.3
1,325,149	-		Sama_1101	0.11	-1.0
1,325,149	-		Sama_1101	0.11	-0.7
1,325,149	-		Sama_1101	0.11	+0.3
1,325,165	+		Sama_1101	0.12	+0.3
1,325,255	+		Sama_1101	0.18	-1.5
1,325,277	-		Sama_1101	0.19	-0.7
1,325,303	+		Sama_1101	0.21	-0.2
1,325,304	-		Sama_1101	0.21	-1.0
1,325,318	-		Sama_1101	0.22	-1.0
1,325,326	+		Sama_1101	0.22	-0.5
1,325,326	+		Sama_1101	0.22	-0.8
1,325,382	+		Sama_1101	0.26	-2.3
1,325,397	+		Sama_1101	0.27	-2.1
1,325,397	+		Sama_1101	0.27	+0.3
1,325,398	-		Sama_1101	0.27	+0.5
1,325,398	-		Sama_1101	0.27	-1.4
1,325,499	+		Sama_1101	0.33	-1.5
1,325,499	+		Sama_1101	0.33	-0.7
1,325,499	+		Sama_1101	0.33	+0.0
1,325,499	+		Sama_1101	0.33	-1.7
1,325,499	+		Sama_1101	0.33	-1.7
1,325,500	-		Sama_1101	0.33	-1.2
1,325,502	+		Sama_1101	0.33	+1.0
1,325,502	+		Sama_1101	0.33	+1.5
1,325,517	+		Sama_1101	0.34	+0.0
1,325,517	+		Sama_1101	0.34	+0.0
1,325,517	+		Sama_1101	0.34	+1.8
1,325,517	+		Sama_1101	0.34	-0.5
1,325,517	+		Sama_1101	0.34	+0.4
1,325,518	-		Sama_1101	0.34	+1.3
1,325,618	+		Sama_1101	0.41	+0.8
1,325,619	-		Sama_1101	0.41	-1.2
1,325,619	-		Sama_1101	0.41	-0.4
1,325,619	-		Sama_1101	0.41	+0.0
1,325,619	-		Sama_1101	0.41	-1.0
1,325,619	-		Sama_1101	0.41	-1.2
1,325,652	-		Sama_1101	0.43	-2.7
1,325,813	+		Sama_1101	0.53	-1.4
1,325,813	+		Sama_1101	0.53	+0.3
1,325,814	-		Sama_1101	0.53	-1.8
1,325,820	-		Sama_1101	0.53	-1.1
1,325,820	-		Sama_1101	0.53	+0.5
1,325,820	-		Sama_1101	0.53	-0.5