Strain Fitness in Shewanella amazonensis SB2B around Sama_1089

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,315,434	+		Sama_1087	0.67	+0.0
1,315,434	+		Sama_1087	0.67	+0.0
1,315,434	+		Sama_1087	0.67	+0.5
1,315,434	+		Sama_1087	0.67	-1.0
1,315,434	+		Sama_1087	0.67	+0.4
1,315,435	-		Sama_1087	0.67	-2.4
1,315,435	-		Sama_1087	0.67	+0.5
1,315,436	+		Sama_1087	0.67	+0.0
1,315,436	+		Sama_1087	0.67	+0.0
1,315,436	+		Sama_1087	0.67	-1.2
1,315,436	+		Sama_1087	0.67	-1.1
1,315,437	-		Sama_1087	0.67	-1.3
1,315,437	-		Sama_1087	0.67	-0.3
1,315,437	-		Sama_1087	0.67	-0.1
1,315,437	-		Sama_1087	0.67	+0.3
1,315,437	-		Sama_1087	0.67	-1.4
1,315,437	-		Sama_1087	0.67	-1.8
1,315,461	-		Sama_1087	0.71	-0.6
1,315,461	-		Sama_1087	0.71	-1.1
1,315,477	+		Sama_1087	0.73	+0.9
1,315,477	+		Sama_1087	0.73	+1.6
1,315,478	-		Sama_1087	0.74	-1.1
1,315,478	-		Sama_1087	0.74	+0.0
1,315,488	-		Sama_1087	0.75	-1.1
1,315,488	-		Sama_1087	0.75	+0.5
1,315,571	+		Sama_1087	0.87	+0.2
1,315,572	-		Sama_1087	0.88	+0.2
1,315,589	+				-2.0
1,315,590	-				+1.4
1,315,641	+				-1.6
1,315,641	+				+0.0
1,315,642	-				+0.3
1,315,642	-				-0.1
1,315,659	+				+0.5
1,315,659	+				-0.6
1,315,659	+				-0.5
1,315,659	+				+0.5
1,315,659	+				-0.6
1,315,659	+				-1.1
1,315,660	-				-0.6
1,315,660	-				+0.3
1,315,660	-				-1.4
1,315,660	-				-0.6
1,315,660	-				-1.1
1,315,660	-				-1.7
1,315,660	-				-0.1
1,315,668	-				-0.3
1,315,668	-				-1.2
1,315,880	-		Sama_1088	0.34	-0.3
1,315,954	-		Sama_1088	0.46	+0.5
1,316,109	+		Sama_1088	0.70	-1.1
1,316,109	+		Sama_1088	0.70	-0.1
1,316,109	+		Sama_1088	0.70	+0.3
1,316,110	-		Sama_1088	0.70	+1.9
1,316,110	-		Sama_1088	0.70	-1.3
1,316,160	+		Sama_1088	0.78	+0.3
1,316,224	+		Sama_1088	0.89	-1.6
1,316,224	+		Sama_1088	0.89	-1.2
1,316,224	+		Sama_1088	0.89	+0.5
1,316,337	-				+0.3
1,316,362	+				-0.8
1,316,362	+				+1.9
1,316,378	+				-0.7
1,316,379	-				+0.3
1,316,381	+				-2.1
1,316,381	+				+0.4
1,316,381	+				+0.0
1,316,381	+				-0.4
1,316,382	-				-0.7
1,316,382	-				-1.1
1,316,402	-				-0.8
1,316,527	-		Sama_1089	0.20	-0.7
1,316,542	+		Sama_1089	0.23	-0.8
1,316,542	+		Sama_1089	0.23	-1.6
1,316,572	+		Sama_1089	0.28	+3.4
1,316,593	+		Sama_1089	0.32	+0.1
1,316,599	+		Sama_1089	0.33	-0.8
1,316,600	-		Sama_1089	0.33	+0.4
1,316,719	-		Sama_1089	0.54	+1.3
1,317,033	+				+0.4
1,317,034	-				-1.5
1,317,034	-				+0.1
1,317,159	-		Sama_1090	0.23	-1.5
1,317,255	+		Sama_1090	0.38	-2.8
1,317,256	-		Sama_1090	0.38	+0.2
1,317,256	-		Sama_1090	0.38	-0.7
1,317,355	+		Sama_1090	0.53	-1.1
1,317,356	-		Sama_1090	0.53	+0.0
1,317,363	+		Sama_1090	0.54	+2.9
1,317,363	+		Sama_1090	0.54	-0.1
1,317,363	+		Sama_1090	0.54	-0.4
1,317,364	-		Sama_1090	0.54	+1.9
1,317,364	-		Sama_1090	0.54	+0.5
1,317,429	+		Sama_1090	0.64	-1.1
1,317,429	+		Sama_1090	0.64	-2.5
1,317,430	-		Sama_1090	0.64	-1.6
1,317,430	-		Sama_1090	0.64	-1.0
1,317,430	-		Sama_1090	0.64	+0.5
1,317,430	-		Sama_1090	0.64	-1.9
1,317,439	+		Sama_1090	0.65	-2.1
1,317,440	-		Sama_1090	0.65	-0.7
1,317,440	-		Sama_1090	0.65	+0.9
1,317,440	-		Sama_1090	0.65	+1.9
1,317,440	-		Sama_1090	0.65	-0.6
1,317,531	-		Sama_1090	0.79	-1.8
1,317,554	+		Sama_1090	0.82	-1.1
1,317,554	+		Sama_1090	0.82	-1.5
1,317,588	+		Sama_1090	0.87	-0.8
1,317,588	+		Sama_1090	0.87	+1.5
1,317,588	+		Sama_1090	0.87	-0.8
1,317,589	-		Sama_1090	0.87	-0.5
1,317,589	-		Sama_1090	0.87	-1.0
1,317,589	-		Sama_1090	0.87	+0.9
1,317,589	-		Sama_1090	0.87	-0.5
1,317,589	-		Sama_1090	0.87	-0.1
1,317,589	-		Sama_1090	0.87	+1.3
1,317,589	-		Sama_1090	0.87	-0.3
1,317,589	-		Sama_1090	0.87	-1.1
1,317,589	-		Sama_1090	0.87	+0.3
1,317,625	+				+0.3
1,317,678	+				-1.1
1,317,678	+				-0.5
1,317,678	+				-1.2
1,317,678	+				-1.8
1,317,678	+				-0.1
1,317,679	-				-0.5
1,317,756	+				+0.2