Strain Fitness in Shewanella amazonensis SB2B around Sama_1041

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,258,244	+		Sama_1040	0.13	-0.5
1,258,244	+		Sama_1040	0.13	-0.5
1,258,245	-		Sama_1040	0.13	+1.5
1,258,350	-		Sama_1040	0.22	+1.3
1,258,429	+		Sama_1040	0.30	-0.4
1,258,430	-		Sama_1040	0.30	-1.0
1,258,451	+		Sama_1040	0.32	-1.7
1,258,451	+		Sama_1040	0.32	+0.5
1,258,452	-		Sama_1040	0.32	-0.7
1,258,491	-		Sama_1040	0.35	+0.9
1,258,491	-		Sama_1040	0.35	-0.7
1,258,572	+		Sama_1040	0.43	+1.9
1,258,572	+		Sama_1040	0.43	-2.1
1,258,648	+		Sama_1040	0.50	-1.0
1,258,648	+		Sama_1040	0.50	+0.9
1,258,674	+		Sama_1040	0.52	-0.5
1,258,703	+		Sama_1040	0.55	+0.7
1,258,703	+		Sama_1040	0.55	-1.8
1,258,704	-		Sama_1040	0.55	+0.7
1,258,704	-		Sama_1040	0.55	+0.9
1,258,704	-		Sama_1040	0.55	-1.6
1,258,794	-		Sama_1040	0.63	+0.9
1,258,823	+		Sama_1040	0.66	-0.1
1,258,824	-		Sama_1040	0.66	-1.5
1,258,932	+		Sama_1040	0.76	+0.3
1,258,932	+		Sama_1040	0.76	-0.3
1,259,103	+				-0.0
1,259,103	+				-0.3
1,259,111	+				-0.3
1,259,111	+				+0.3
1,259,111	+				-1.0
1,259,111	+				+0.0
1,259,111	+				-0.8
1,259,112	-				+1.4
1,259,112	-				+1.3
1,259,112	-				-0.8
1,259,112	-				+0.2
1,259,113	+				+0.7
1,259,113	+				-0.5
1,259,113	+				+0.5
1,259,113	+				+0.4
1,259,113	+				-1.2
1,259,113	+				+1.3
1,259,113	+				-0.5
1,259,113	+				-1.7
1,259,114	-				-0.6
1,259,114	-				+0.5
1,259,114	-				-0.8
1,259,187	+				+1.5
1,259,203	+				+1.3
1,259,203	+				+2.6
1,259,203	+				+1.9
1,259,203	+				+1.6
1,259,204	-				-0.1
1,259,204	-				+1.4
1,259,204	-				+0.7
1,259,237	+				-0.3
1,259,237	+				+3.0
1,259,237	+				+2.6
1,259,238	-				+1.7
1,259,313	+	surE	Sama_1041	0.19	+1.6
1,259,347	+	surE	Sama_1041	0.24	+0.9
1,259,347	+	surE	Sama_1041	0.24	+2.4
1,259,563	+	surE	Sama_1041	0.53	+1.8
1,259,564	-	surE	Sama_1041	0.53	+0.5
1,259,564	-	surE	Sama_1041	0.53	-1.8
1,259,564	-	surE	Sama_1041	0.53	+0.3
1,259,729	+	surE	Sama_1041	0.75	+2.3
1,259,729	+	surE	Sama_1041	0.75	+2.2
1,259,729	+	surE	Sama_1041	0.75	+1.4
1,259,729	+	surE	Sama_1041	0.75	+2.0
1,259,730	-	surE	Sama_1041	0.75	+1.3
1,259,730	-	surE	Sama_1041	0.75	+0.7
1,259,730	-	surE	Sama_1041	0.75	+1.3
1,259,833	+	surE	Sama_1041	0.89	+2.1
1,259,833	+	surE	Sama_1041	0.89	-0.1
1,259,833	+	surE	Sama_1041	0.89	+2.2
1,259,833	+	surE	Sama_1041	0.89	+1.6
1,259,833	+	surE	Sama_1041	0.89	+2.4
1,259,834	-	surE	Sama_1041	0.89	+0.4
1,259,834	-	surE	Sama_1041	0.89	+0.5
1,259,834	-	surE	Sama_1041	0.89	+0.6
1,259,834	-	surE	Sama_1041	0.89	+0.5
1,259,834	-	surE	Sama_1041	0.89	+0.8
1,259,834	-	surE	Sama_1041	0.89	-0.3
1,259,834	-	surE	Sama_1041	0.89	-0.6
1,259,884	-				+0.7
1,259,912	+				+0.3
1,259,961	+				-0.1
1,259,961	+				-1.0
1,259,961	+				-2.0
1,259,961	+				-1.1
1,259,961	+				-0.6
1,259,961	+				-2.1
1,259,962	-				-0.5
1,260,055	-		Sama_1042	0.22	+0.0
1,260,077	-		Sama_1042	0.26	-0.3
1,260,105	+		Sama_1042	0.30	-0.1
1,260,105	+		Sama_1042	0.30	-1.0
1,260,105	+		Sama_1042	0.30	+1.1
1,260,105	+		Sama_1042	0.30	+0.1
1,260,105	+		Sama_1042	0.30	-0.2
1,260,105	+		Sama_1042	0.30	-0.1
1,260,105	+		Sama_1042	0.30	+0.9
1,260,105	+		Sama_1042	0.30	+0.3
1,260,105	+		Sama_1042	0.30	+1.3
1,260,105	+		Sama_1042	0.30	+1.4
1,260,105	+		Sama_1042	0.30	-0.3
1,260,105	+		Sama_1042	0.30	+0.4
1,260,105	+		Sama_1042	0.30	-0.7
1,260,105	+		Sama_1042	0.30	-0.3
1,260,105	+		Sama_1042	0.30	-0.4
1,260,105	+		Sama_1042	0.30	-0.8
1,260,105	+		Sama_1042	0.30	-2.8
1,260,106	-		Sama_1042	0.30	+0.3
1,260,106	-		Sama_1042	0.30	-0.5
1,260,106	-		Sama_1042	0.30	+1.3
1,260,106	-		Sama_1042	0.30	+2.0
1,260,106	-		Sama_1042	0.30	+0.9
1,260,106	-		Sama_1042	0.30	-0.3
1,260,106	-		Sama_1042	0.30	+0.7
1,260,106	-		Sama_1042	0.30	+1.0
1,260,106	-		Sama_1042	0.30	+0.5
1,260,106	-		Sama_1042	0.30	-0.3
1,260,106	-		Sama_1042	0.30	-1.1
1,260,106	-		Sama_1042	0.30	+0.3
1,260,106	-		Sama_1042	0.30	+1.0
1,260,106	-		Sama_1042	0.30	+1.3
1,260,107	+		Sama_1042	0.31	-1.3
1,260,107	+		Sama_1042	0.31	-0.6
1,260,107	+		Sama_1042	0.31	+0.9
1,260,107	+		Sama_1042	0.31	-0.8
1,260,107	+		Sama_1042	0.31	+1.0
1,260,107	+		Sama_1042	0.31	-0.8
1,260,108	-		Sama_1042	0.31	-0.1
1,260,108	-		Sama_1042	0.31	-0.3
1,260,108	-		Sama_1042	0.31	-1.1
1,260,108	-		Sama_1042	0.31	-0.5
1,260,108	-		Sama_1042	0.31	-0.5
1,260,194	+		Sama_1042	0.44	-2.1
1,260,229	+		Sama_1042	0.50	+0.5
1,260,229	+		Sama_1042	0.50	+1.9
1,260,229	+		Sama_1042	0.50	+0.9
1,260,229	+		Sama_1042	0.50	+0.9
1,260,229	+		Sama_1042	0.50	-0.7
1,260,230	-		Sama_1042	0.50	-0.1
1,260,230	-		Sama_1042	0.50	+0.9
1,260,230	-		Sama_1042	0.50	+1.7
1,260,239	+		Sama_1042	0.51	-1.5
1,260,239	+		Sama_1042	0.51	-1.2
1,260,239	+		Sama_1042	0.51	-2.1
1,260,272	+		Sama_1042	0.56	-0.1
1,260,302	+		Sama_1042	0.61	+0.0
1,260,302	+		Sama_1042	0.61	+1.9
1,260,302	+		Sama_1042	0.61	+0.0
1,260,302	+		Sama_1042	0.61	+0.5
1,260,303	-		Sama_1042	0.61	-1.1
1,260,306	+		Sama_1042	0.62	-2.2
1,260,306	+		Sama_1042	0.62	-1.0
1,260,306	+		Sama_1042	0.62	-0.8
1,260,307	-		Sama_1042	0.62	+1.3
1,260,382	+		Sama_1042	0.74	+0.5
1,260,382	+		Sama_1042	0.74	-0.7
1,260,382	+		Sama_1042	0.74	+0.4
1,260,382	+		Sama_1042	0.74	+0.5
1,260,382	+		Sama_1042	0.74	-0.1
1,260,383	-		Sama_1042	0.74	+1.9
1,260,383	-		Sama_1042	0.74	+1.3
1,260,383	-		Sama_1042	0.74	+1.0
1,260,394	+		Sama_1042	0.76	-0.1
1,260,428	+		Sama_1042	0.81	+0.4
1,260,428	+		Sama_1042	0.81	+2.0
1,260,428	+		Sama_1042	0.81	+1.1
1,260,457	+		Sama_1042	0.86	-0.3
1,260,457	+		Sama_1042	0.86	+0.9
1,260,457	+		Sama_1042	0.86	+0.2
1,260,486	+				-1.3
1,260,487	-				+0.4
1,260,487	-				-0.6
1,260,546	+				+0.9
1,260,719	+		Sama_1043	0.16	+1.0
1,260,719	+		Sama_1043	0.16	-0.1
1,260,721	+		Sama_1043	0.16	+0.3
1,260,722	-		Sama_1043	0.16	+0.9
1,260,841	-		Sama_1043	0.30	-0.8
1,260,886	+		Sama_1043	0.35	-0.5
1,260,887	-		Sama_1043	0.35	+0.3
1,260,887	-		Sama_1043	0.35	+0.3
1,260,887	-		Sama_1043	0.35	+0.9
1,260,887	-		Sama_1043	0.35	-0.3