Strain Fitness in Shewanella amazonensis SB2B around Sama_1036

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyrG and eno are separated by 218 nucleotideseno and Sama_1037 are separated by 181 nucleotidesSama_1037 and ispD overlap by 4 nucleotides Sama_1035: pyrG - CTP synthetase (RefSeq), at 1,253,255 to 1,254,892 pyrG Sama_1036: eno - phosphopyruvate hydratase (RefSeq), at 1,255,111 to 1,256,406 eno Sama_1037: Sama_1037 - cell division protein FtsB (RefSeq), at 1,256,588 to 1,256,905 _1037 Sama_1038: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 1,256,902 to 1,257,618 ispD Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -2 -1 0 1 2at 1254.890 kb on + strandat 1254.890 kb on + strandat 1254.963 kb on + strandat 1254.964 kb on - strandat 1255.000 kb on + strandat 1255.042 kb on + strandat 1255.057 kb on + strandat 1255.085 kb on + strandat 1255.085 kb on + strandat 1256.415 kb on + strandat 1256.423 kb on - strandat 1256.432 kb on + strandat 1256.446 kb on + strandat 1256.447 kb on - strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.449 kb on - strandat 1256.449 kb on - strandat 1256.449 kb on - strandat 1256.484 kb on + strandat 1256.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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1,254,890 + -0.4
1,254,890 + -0.2
1,254,963 + +0.5
1,254,964 - +2.0
1,255,000 + +0.4
1,255,042 + +0.3
1,255,057 + -0.7
1,255,085 + +0.9
1,255,085 + -2.7
1,256,415 + +0.6
1,256,423 - -1.1
1,256,432 + -0.7
1,256,446 + -1.4
1,256,447 - +1.3
1,256,448 + -1.0
1,256,448 + -1.4
1,256,448 + -1.2
1,256,448 + -0.1
1,256,448 + -0.6
1,256,449 - +0.5
1,256,449 - -0.1
1,256,449 - +0.9
1,256,484 + -1.4
1,256,485 - -1.0

Or see this region's nucleotide sequence