Strain Fitness in Shewanella amazonensis SB2B around Sama_1003

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,213,891	+		Sama_1001	0.81	-1.7
1,213,891	+		Sama_1001	0.81	-0.3
1,213,891	+		Sama_1001	0.81	-1.0
1,213,928	-		Sama_1001	0.84	-0.6
1,213,928	-		Sama_1001	0.84	+0.7
1,213,928	-		Sama_1001	0.84	-0.5
1,213,995	-				-1.1
1,214,125	-				-0.4
1,214,131	-				+0.7
1,214,131	-				+1.9
1,214,169	+				+0.3
1,214,170	-		Sama_1002	0.10	+2.5
1,214,304	+		Sama_1002	0.63	+3.5
1,214,357	-		Sama_1002	0.85	+0.6
1,214,366	-		Sama_1002	0.88	+2.5
1,214,366	-		Sama_1002	0.88	+0.5
1,214,368	+		Sama_1002	0.89	-0.6
1,214,387	+				+2.8
1,214,499	-				+0.1
1,214,499	-				-0.6
1,214,534	+				+0.9
1,214,535	-				+0.8
1,214,535	-				-1.9
1,214,592	-				+0.1
1,214,615	-				-0.6
1,214,615	-				-0.1
1,214,615	-				-1.3
1,214,615	-				+1.5
1,214,630	-				-0.5
1,214,630	-				-1.5
1,214,672	+				-0.5
1,214,672	+				-2.4
1,214,673	-				+1.1
1,214,673	-				-1.9
1,214,673	-				-0.9
1,214,673	-				+0.5
1,214,724	+				+0.3
1,214,724	+				+0.2
1,214,786	+				+0.4
1,214,787	-				-2.3
1,214,832	-				-0.2
1,214,858	-		Sama_1003	0.11	-1.5
1,214,858	-		Sama_1003	0.11	-1.2
1,214,858	-		Sama_1003	0.11	-0.1
1,214,904	+		Sama_1003	0.30	-0.8
1,214,915	+		Sama_1003	0.35	-0.4
1,214,915	+		Sama_1003	0.35	-0.9
1,214,957	+		Sama_1003	0.52	-1.3
1,214,957	+		Sama_1003	0.52	-0.6
1,214,958	-		Sama_1003	0.52	-0.0
1,214,958	-		Sama_1003	0.52	-1.5
1,214,967	+		Sama_1003	0.56	-0.4
1,214,968	-		Sama_1003	0.56	-0.1
1,214,968	+		Sama_1003	0.56	+0.7
1,214,968	-		Sama_1003	0.56	+1.3
1,214,968	-		Sama_1003	0.56	+2.9
1,214,980	+		Sama_1003	0.61	-1.5
1,214,981	-		Sama_1003	0.62	-2.0
1,215,071	+				+1.6
1,215,072	-				-1.1
1,215,072	-				-0.5
1,215,072	-				+0.2
1,215,072	-				-1.3
1,215,072	-				-1.2
1,215,157	+				+0.7
1,215,157	+				+0.4
1,215,157	+				-1.1
1,215,157	+				-1.5
1,215,158	-				-1.8
1,215,164	-				-0.1
1,215,226	-				-0.3
1,215,345	+				+3.7
1,215,346	-				+0.5
1,215,346	-				+1.0
1,215,399	+		Sama_1004	0.13	+2.6
1,215,399	+		Sama_1004	0.13	+1.3
1,215,399	+		Sama_1004	0.13	+4.4
1,215,400	-		Sama_1004	0.13	+2.1
1,215,400	-		Sama_1004	0.13	-0.0
1,215,400	-		Sama_1004	0.13	+1.6
1,215,411	-		Sama_1004	0.13	+2.4
1,215,425	-		Sama_1004	0.14	+1.3
1,215,571	-		Sama_1004	0.25	+1.4
1,215,571	-		Sama_1004	0.25	+2.1
1,215,571	-		Sama_1004	0.25	+2.8
1,215,705	+		Sama_1004	0.34	+2.5
1,215,706	-		Sama_1004	0.34	+1.2
1,215,718	+		Sama_1004	0.35	+2.4
1,215,730	-		Sama_1004	0.36	+3.5
1,215,732	+		Sama_1004	0.36	+2.2
1,215,733	-		Sama_1004	0.36	+3.2
1,215,733	-		Sama_1004	0.36	+1.9
1,215,733	-		Sama_1004	0.36	+2.1
1,215,733	-		Sama_1004	0.36	+2.6
1,215,733	-		Sama_1004	0.36	+0.8
1,215,746	-		Sama_1004	0.37	-0.0
1,215,829	-		Sama_1004	0.43	+0.8
1,215,834	+		Sama_1004	0.44	+1.5
1,215,834	+		Sama_1004	0.44	+0.5
1,215,834	+		Sama_1004	0.44	+2.3
1,215,834	+		Sama_1004	0.44	+2.6
1,215,835	-		Sama_1004	0.44	-0.8
1,215,835	-		Sama_1004	0.44	+1.6
1,215,835	-		Sama_1004	0.44	+2.2
1,215,835	-		Sama_1004	0.44	+1.9
1,215,835	-		Sama_1004	0.44	+2.1
1,215,835	-		Sama_1004	0.44	+2.7
1,215,835	-		Sama_1004	0.44	+3.2
1,215,835	-		Sama_1004	0.44	+0.5
1,215,867	+		Sama_1004	0.46	+2.6
1,215,867	+		Sama_1004	0.46	+1.5
1,215,868	-		Sama_1004	0.46	+1.4
1,215,868	-		Sama_1004	0.46	+1.4
1,216,020	+		Sama_1004	0.57	+4.2
1,216,020	+		Sama_1004	0.57	+1.9
1,216,021	-		Sama_1004	0.57	+0.3
1,216,072	+		Sama_1004	0.61	-0.8
1,216,072	+		Sama_1004	0.61	-2.2
1,216,073	-		Sama_1004	0.61	-0.6
1,216,073	-		Sama_1004	0.61	+3.2
1,216,073	-		Sama_1004	0.61	+1.7