Strain Fitness in Shewanella amazonensis SB2B around Sama_0985

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
1,189,321	+		Sama_0984	0.10	-1.1
1,189,321	+		Sama_0984	0.10	+1.4
1,189,321	+		Sama_0984	0.10	+1.7
1,189,321	+		Sama_0984	0.10	+0.3
1,189,321	+		Sama_0984	0.10	-1.1
1,189,321	+		Sama_0984	0.10	+0.7
1,189,321	+		Sama_0984	0.10	-1.7
1,189,322	-		Sama_0984	0.10	+1.6
1,189,322	-		Sama_0984	0.10	-0.6
1,189,322	-		Sama_0984	0.10	-1.1
1,189,322	-		Sama_0984	0.10	+0.4
1,189,323	+		Sama_0984	0.10	-0.3
1,189,357	+		Sama_0984	0.14	-1.4
1,189,390	+		Sama_0984	0.17	-0.1
1,189,390	+		Sama_0984	0.17	-1.7
1,189,390	+		Sama_0984	0.17	-0.5
1,189,461	-		Sama_0984	0.24	-1.7
1,189,461	-		Sama_0984	0.24	-0.7
1,189,461	-		Sama_0984	0.24	+1.5
1,189,475	-		Sama_0984	0.25	-1.8
1,189,475	-		Sama_0984	0.25	-0.3
1,189,475	-		Sama_0984	0.25	+0.5
1,189,477	+		Sama_0984	0.25	+0.0
1,189,477	+		Sama_0984	0.25	-1.3
1,189,478	-		Sama_0984	0.25	+0.0
1,189,478	-		Sama_0984	0.25	-1.4
1,189,478	-		Sama_0984	0.25	-0.2
1,189,484	+		Sama_0984	0.26	+0.6
1,189,635	+		Sama_0984	0.40	-0.1
1,189,636	-		Sama_0984	0.40	+0.0
1,189,666	+		Sama_0984	0.43	-0.6
1,189,666	+		Sama_0984	0.43	-0.8
1,189,667	-		Sama_0984	0.43	+1.0
1,189,785	-		Sama_0984	0.55	-1.4
1,189,846	+		Sama_0984	0.61	-1.2
1,189,846	+		Sama_0984	0.61	-0.8
1,189,846	+		Sama_0984	0.61	+1.8
1,189,854	+		Sama_0984	0.61	-0.5
1,189,854	+		Sama_0984	0.61	+1.9
1,189,854	+		Sama_0984	0.61	+0.0
1,189,855	-		Sama_0984	0.62	-0.3
1,189,855	-		Sama_0984	0.62	-0.3
1,189,855	-		Sama_0984	0.62	-1.1
1,189,855	-		Sama_0984	0.62	+2.9
1,189,858	-		Sama_0984	0.62	-0.7
1,189,858	-		Sama_0984	0.62	+1.0
1,190,036	+		Sama_0984	0.79	-0.6
1,190,036	+		Sama_0984	0.79	-1.1
1,190,036	+		Sama_0984	0.79	-1.1
1,190,037	-		Sama_0984	0.79	-1.5
1,190,037	-		Sama_0984	0.79	-1.0
1,190,037	-		Sama_0984	0.79	-1.1
1,190,037	-		Sama_0984	0.79	+0.5
1,190,041	-		Sama_0984	0.79	+3.1
1,190,041	-		Sama_0984	0.79	-0.5
1,190,041	-		Sama_0984	0.79	-1.4
1,190,041	-		Sama_0984	0.79	+0.7
1,190,041	-		Sama_0984	0.79	+0.5
1,190,041	-		Sama_0984	0.79	-0.9
1,190,041	-		Sama_0984	0.79	-0.4
1,190,054	+		Sama_0984	0.81	-1.4
1,190,055	-		Sama_0984	0.81	-0.1
1,190,065	+		Sama_0984	0.82	+1.0
1,190,065	+		Sama_0984	0.82	+0.0
1,190,065	+		Sama_0984	0.82	-2.4
1,190,065	+		Sama_0984	0.82	-0.7
1,190,066	-		Sama_0984	0.82	-0.3
1,190,066	-		Sama_0984	0.82	+1.3
1,190,066	-		Sama_0984	0.82	-0.3
1,190,066	-		Sama_0984	0.82	+0.3
1,190,075	-		Sama_0984	0.83	-0.0
1,190,080	+		Sama_0984	0.83	+0.0
1,190,081	-		Sama_0984	0.83	-0.1
1,190,081	-		Sama_0984	0.83	+0.9
1,190,081	-		Sama_0984	0.83	-1.0
1,190,100	+		Sama_0984	0.85	+0.0
1,190,100	+		Sama_0984	0.85	-1.5
1,190,100	+		Sama_0984	0.85	-1.4
1,190,100	+		Sama_0984	0.85	-0.7
1,190,101	-		Sama_0984	0.85	+0.2
1,190,101	-		Sama_0984	0.85	+1.3
1,190,101	-		Sama_0984	0.85	-0.8
1,190,101	-		Sama_0984	0.85	-0.4
1,190,101	-		Sama_0984	0.85	-1.0
1,190,101	-		Sama_0984	0.85	-1.4
1,190,101	-		Sama_0984	0.85	-1.0
1,190,101	-		Sama_0984	0.85	+2.9
1,190,101	-		Sama_0984	0.85	-0.8
1,190,150	-				-1.1
1,190,227	+				-0.0
1,190,227	+				-1.1
1,190,227	+				-0.1
1,190,228	-				-0.1
1,190,228	-				-1.7
1,190,245	+				-1.0
1,190,245	+				+0.0
1,190,245	+				-0.5
1,190,245	+				-0.1
1,190,245	+				-0.5
1,190,246	-				-1.1
1,190,246	-				+0.4
1,190,246	-				-0.8
1,190,246	-				-1.0
1,190,246	-				-0.1
1,190,267	+				+1.3
1,190,267	+				-0.3
1,190,267	+				-0.8
1,190,268	-				+0.5
1,190,290	-				-1.2
1,190,290	-				-1.3
1,190,290	-				+0.3
1,190,296	+				-0.4
1,190,296	+				+0.0
1,190,296	+				+0.0
1,190,296	+				-0.7
1,190,296	+				-0.1
1,190,296	+				+1.4
1,190,297	-				+0.9
1,190,297	-				-0.6
1,190,297	-				-0.1
1,190,297	-				+0.9
1,190,297	-				-1.0
1,190,297	-				-1.4
1,190,297	-				-0.7
1,190,298	+				+2.5
1,190,298	+				-0.6
1,190,298	+				-0.5
1,190,298	+				-0.1
1,190,298	+				-1.9
1,190,298	+				+0.4
1,190,298	+				+0.9
1,190,298	+				+1.5
1,190,298	+				-0.1
1,190,298	+				-0.5
1,190,299	-				+1.3
1,190,299	-				-0.5
1,190,299	-				-0.6
1,190,299	-				+0.4
1,190,299	-				-0.7
1,190,299	-				-0.8
1,190,299	-				-1.7
1,190,299	-				+0.9
1,190,299	-				+0.2
1,190,299	-				+0.7
1,190,371	-				-2.0
1,190,371	-				+1.4
1,190,428	-				-0.5
1,190,443	+				-0.5
1,190,443	+				+1.1
1,190,443	+				+1.3
1,190,443	+				-1.3
1,190,443	+				+0.7
1,190,444	-				-1.0
1,190,444	-				-1.0
1,190,444	-				-0.5
1,190,444	-				+0.4
1,190,444	-				-1.5
1,190,444	-				-0.8
1,190,444	-				-1.1
1,190,444	-				+0.9
1,190,463	+				-0.8
1,190,493	+				-0.1
1,190,493	+				-0.7
1,190,494	-				-1.0
1,190,494	-				-0.8
1,190,494	-				-1.3
1,190,565	+				+0.0
1,190,566	-				-0.6
1,190,566	-				-0.3
1,190,637	+		Sama_0985	0.11	-0.2
1,190,637	+		Sama_0985	0.11	+0.3
1,190,637	+		Sama_0985	0.11	-0.4
1,190,637	+		Sama_0985	0.11	+0.7
1,190,638	-		Sama_0985	0.11	-0.3
1,190,638	-		Sama_0985	0.11	-0.6
1,190,638	-		Sama_0985	0.11	-0.7
1,190,642	-		Sama_0985	0.11	-1.1
1,190,806	-		Sama_0985	0.17	-0.1
1,190,913	+		Sama_0985	0.21	-1.7
1,190,913	+		Sama_0985	0.21	-1.5
1,190,913	+		Sama_0985	0.21	-0.5
1,190,914	-		Sama_0985	0.21	-0.6
1,190,914	-		Sama_0985	0.21	+1.3
1,190,929	+		Sama_0985	0.21	-0.6
1,191,031	+		Sama_0985	0.25	-1.8
1,191,065	+		Sama_0985	0.26	-0.6
1,191,085	+		Sama_0985	0.27	-0.1
1,191,085	+		Sama_0985	0.27	-0.7
1,191,085	+		Sama_0985	0.27	+0.3
1,191,086	-		Sama_0985	0.27	-0.3
1,191,181	-		Sama_0985	0.30	+0.9
1,191,242	-		Sama_0985	0.32	-0.9
1,191,242	-		Sama_0985	0.32	-0.5
1,191,320	+		Sama_0985	0.35	+1.3
1,191,320	+		Sama_0985	0.35	-1.2
1,191,320	+		Sama_0985	0.35	-1.1
1,191,321	-		Sama_0985	0.35	-1.2
1,191,413	+		Sama_0985	0.38	-0.6
1,191,414	-		Sama_0985	0.38	+1.4
1,191,414	-		Sama_0985	0.38	-0.8
1,191,421	+		Sama_0985	0.38	-1.7
1,191,421	+		Sama_0985	0.38	-0.1
1,191,421	+		Sama_0985	0.38	+0.1
1,191,422	-		Sama_0985	0.38	+0.1
1,191,455	-		Sama_0985	0.39	+0.4
1,191,479	-		Sama_0985	0.40	-0.1
1,191,518	-		Sama_0985	0.41	+0.7
1,191,642	+		Sama_0985	0.46	-0.7
1,191,642	+		Sama_0985	0.46	+0.9
1,191,643	-		Sama_0985	0.46	+0.5
1,191,643	-		Sama_0985	0.46	+0.5
1,191,645	+		Sama_0985	0.46	-0.5
1,191,645	+		Sama_0985	0.46	-0.1
1,191,646	-		Sama_0985	0.46	-1.5
1,191,646	-		Sama_0985	0.46	+0.3
1,191,646	-		Sama_0985	0.46	+2.9
1,191,782	+		Sama_0985	0.50	-0.0
1,191,790	+		Sama_0985	0.51	-1.9
1,191,790	+		Sama_0985	0.51	-0.1
1,191,791	-		Sama_0985	0.51	-2.2
1,191,791	-		Sama_0985	0.51	-0.1
1,191,791	-		Sama_0985	0.51	+0.1
1,191,836	+		Sama_0985	0.52	+1.4
1,191,864	+		Sama_0985	0.53	-0.9
1,191,907	-		Sama_0985	0.55	-0.5
1,191,955	+		Sama_0985	0.56	-0.1
1,192,028	+		Sama_0985	0.59	-1.5
1,192,028	+		Sama_0985	0.59	-1.9
1,192,029	-		Sama_0985	0.59	+1.3
1,192,029	-		Sama_0985	0.59	-0.9
1,192,338	+		Sama_0985	0.69	+0.5
1,192,338	+		Sama_0985	0.69	-0.9
1,192,499	+		Sama_0985	0.75	-1.3
1,192,499	+		Sama_0985	0.75	-0.4
1,192,499	+		Sama_0985	0.75	+1.3
1,192,598	-		Sama_0985	0.78	+0.1
1,192,720	-		Sama_0985	0.83	-1.0
1,192,809	+		Sama_0985	0.86	-0.4
1,192,809	+		Sama_0985	0.86	-1.0
1,192,809	+		Sama_0985	0.86	+1.3
1,192,809	+		Sama_0985	0.86	-1.0
1,192,809	+		Sama_0985	0.86	-0.9
1,192,809	+		Sama_0985	0.86	-1.1
1,192,810	-		Sama_0985	0.86	+1.6
1,192,898	-		Sama_0985	0.89	+0.9
1,193,119	-				+0.7
1,193,119	-				-0.5
1,193,119	-				+0.9
1,193,194	-				-0.6
1,193,215	+				-0.3
1,193,260	+				-2.2
1,193,260	+				+0.1
1,193,260	+				-1.5
1,193,261	-				-0.9
1,193,316	+				-1.2
1,193,316	+				-0.6
1,193,316	+				+0.3
1,193,317	-				-1.7
1,193,335	+				-1.0
1,193,359	+				-0.5
1,193,359	+				+3.2
1,193,359	+				-0.4
1,193,379	+				+0.7
1,193,379	+				-0.2
1,193,379	+				+1.4
1,193,380	-				-1.3
1,193,438	+	torD	Sama_0986	0.17	-0.8
1,193,438	+	torD	Sama_0986	0.17	-1.9
1,193,439	-	torD	Sama_0986	0.18	-0.7
1,193,439	-	torD	Sama_0986	0.18	-1.1
1,193,580	+	torD	Sama_0986	0.37	-0.7
1,193,580	+	torD	Sama_0986	0.37	-0.1
1,193,581	-	torD	Sama_0986	0.38	-1.1
1,193,581	-	torD	Sama_0986	0.38	+0.4
1,193,581	-	torD	Sama_0986	0.38	-1.3
1,193,611	-	torD	Sama_0986	0.42	-1.4
1,193,645	-	torD	Sama_0986	0.47	-0.6
1,193,649	+	torD	Sama_0986	0.47	+0.5
1,193,694	+	torD	Sama_0986	0.54	-0.1
1,193,695	-	torD	Sama_0986	0.54	-0.7
1,193,695	-	torD	Sama_0986	0.54	-0.3
1,193,802	+	torD	Sama_0986	0.69	+0.3
1,193,802	+	torD	Sama_0986	0.69	-0.0
1,193,802	+	torD	Sama_0986	0.69	+0.5
1,193,803	-	torD	Sama_0986	0.69	+1.1
1,193,803	-	torD	Sama_0986	0.69	+0.2
1,193,806	+	torD	Sama_0986	0.69	-0.6
1,193,806	+	torD	Sama_0986	0.69	-1.3
1,193,806	+	torD	Sama_0986	0.69	-0.1
1,193,806	+	torD	Sama_0986	0.69	+0.3
1,193,806	+	torD	Sama_0986	0.69	+1.3
1,193,806	+	torD	Sama_0986	0.69	-0.6
1,193,806	+	torD	Sama_0986	0.69	+0.3
1,193,806	+	torD	Sama_0986	0.69	-0.6
1,193,806	+	torD	Sama_0986	0.69	-2.6
1,193,807	-	torD	Sama_0986	0.69	-0.7
1,193,807	-	torD	Sama_0986	0.69	+1.1
1,193,807	-	torD	Sama_0986	0.69	+0.5
1,193,807	-	torD	Sama_0986	0.69	-1.5
1,193,807	-	torD	Sama_0986	0.69	-1.0
1,193,807	-	torD	Sama_0986	0.69	-0.3
1,193,807	-	torD	Sama_0986	0.69	+1.3
1,193,945	+	torD	Sama_0986	0.89	-0.0
1,193,945	+	torD	Sama_0986	0.89	+0.5
1,193,945	+	torD	Sama_0986	0.89	+0.2
1,194,107	+				+1.1
1,194,107	+				-1.8
1,194,107	+				-0.1
1,194,107	+				-0.1
1,194,107	+				+0.7
1,194,108	-				-0.8
1,194,138	+				+0.5
1,194,138	+				-1.1
1,194,138	+				-1.3
1,194,139	-				-0.1
1,194,139	-				-1.2
1,194,139	-				-0.1