Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0802 and Sama_0803 are separated by 153 nucleotides Sama_0803 and Sama_0804 are separated by 26 nucleotides
Sama_0802: Sama_0802 - carboxypeptidase Taq (RefSeq), at 985,300 to 986,781
_0802
Sama_0803: Sama_0803 - hypothetical protein (RefSeq), at 986,935 to 987,570
_0803
Sama_0804: Sama_0804 - hypothetical protein (RefSeq), at 987,597 to 989,354
_0804
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.976 kb on + strand, within Sama_0802 at 986.022 kb on + strand, within Sama_0802 at 986.170 kb on + strand, within Sama_0802 at 986.170 kb on + strand, within Sama_0802 at 986.235 kb on + strand, within Sama_0802 at 986.235 kb on + strand, within Sama_0802 at 986.310 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.407 kb on - strand, within Sama_0802 at 986.431 kb on - strand, within Sama_0802 at 986.525 kb on + strand, within Sama_0802 at 986.526 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.765 kb on - strand at 986.765 kb on - strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.769 kb on - strand at 986.810 kb on + strand at 986.810 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.871 kb on - strand at 986.871 kb on - strand at 986.871 kb on - strand at 986.910 kb on + strand at 986.920 kb on + strand at 986.977 kb on - strand at 986.982 kb on - strand at 986.982 kb on - strand at 986.982 kb on - strand at 986.985 kb on - strand at 986.985 kb on - strand at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.039 kb on - strand, within Sama_0803 at 987.039 kb on - strand, within Sama_0803 at 987.084 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.202 kb on + strand, within Sama_0803 at 987.222 kb on + strand, within Sama_0803 at 987.223 kb on - strand, within Sama_0803 at 987.224 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.390 kb on + strand, within Sama_0803 at 987.391 kb on - strand, within Sama_0803 at 987.391 kb on - strand, within Sama_0803 at 987.407 kb on + strand, within Sama_0803 at 987.435 kb on - strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.461 kb on - strand, within Sama_0803 at 987.461 kb on - strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.515 kb on + strand at 987.515 kb on + strand at 987.516 kb on - strand at 987.516 kb on - strand at 987.522 kb on + strand at 987.523 kb on - strand at 987.568 kb on + strand at 987.568 kb on + strand at 987.568 kb on + strand at 987.569 kb on - strand at 987.578 kb on + strand at 987.578 kb on + strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.582 kb on + strand at 987.582 kb on + strand at 987.582 kb on + strand at 987.583 kb on - strand at 987.583 kb on - strand at 987.595 kb on - strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.646 kb on + strand at 987.647 kb on - strand at 987.661 kb on + strand at 987.676 kb on + strand at 987.763 kb on + strand at 987.764 kb on - strand at 987.793 kb on + strand, within Sama_0804 at 987.818 kb on + strand, within Sama_0804 at 987.818 kb on + strand, within Sama_0804 at 987.825 kb on - strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.834 kb on - strand, within Sama_0804 at 987.866 kb on + strand, within Sama_0804 at 987.909 kb on + strand, within Sama_0804 at 987.909 kb on + strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.971 kb on + strand, within Sama_0804 at 988.307 kb on + strand, within Sama_0804 at 988.391 kb on + strand, within Sama_0804 at 988.483 kb on + strand, within Sama_0804 at 988.562 kb on + strand, within Sama_0804
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 985,976 + Sama_0802 0.46 +1.1 986,022 + Sama_0802 0.49 -1.5 986,170 + Sama_0802 0.59 -1.8 986,170 + Sama_0802 0.59 -0.2 986,235 + Sama_0802 0.63 -1.0 986,235 + Sama_0802 0.63 -0.6 986,310 + Sama_0802 0.68 -0.4 986,322 + Sama_0802 0.69 -0.1 986,322 + Sama_0802 0.69 +0.2 986,322 + Sama_0802 0.69 -0.7 986,323 - Sama_0802 0.69 +1.0 986,323 - Sama_0802 0.69 -0.3 986,323 - Sama_0802 0.69 +0.8 986,327 + Sama_0802 0.69 -0.5 986,327 + Sama_0802 0.69 +0.4 986,327 + Sama_0802 0.69 +1.3 986,328 - Sama_0802 0.69 -0.9 986,328 - Sama_0802 0.69 +0.2 986,328 - Sama_0802 0.69 -1.2 986,407 - Sama_0802 0.75 +0.3 986,431 - Sama_0802 0.76 +1.3 986,525 + Sama_0802 0.83 +0.4 986,526 - Sama_0802 0.83 +0.4 986,584 - Sama_0802 0.87 -1.2 986,584 - Sama_0802 0.87 -0.3 986,584 - Sama_0802 0.87 -0.0 986,628 + Sama_0802 0.90 -0.4 986,628 + Sama_0802 0.90 +0.5 986,628 + Sama_0802 0.90 -2.1 986,628 + Sama_0802 0.90 +1.4 986,628 + Sama_0802 0.90 +0.4 986,765 - -1.0 986,765 - -0.2 986,768 + +0.9 986,768 + +0.9 986,768 + -0.7 986,768 + -0.3 986,768 + -1.3 986,768 + +0.4 986,768 + +0.5 986,768 + -0.2 986,769 - -0.0 986,810 + -1.1 986,810 + -1.2 986,870 + -0.6 986,870 + -0.5 986,870 + +0.2 986,870 + -1.4 986,871 - -1.4 986,871 - +1.3 986,871 - -1.5 986,910 + +0.2 986,920 + -1.3 986,977 - +0.2 986,982 - -0.6 986,982 - -3.0 986,982 - -1.8 986,985 - -0.7 986,985 - +0.8 987,038 + Sama_0803 0.16 -0.0 987,038 + Sama_0803 0.16 -2.0 987,038 + Sama_0803 0.16 -1.3 987,038 + Sama_0803 0.16 -1.6 987,039 - Sama_0803 0.16 -0.3 987,039 - Sama_0803 0.16 -0.3 987,084 + Sama_0803 0.23 -1.0 987,122 + Sama_0803 0.29 -2.9 987,122 + Sama_0803 0.29 -0.6 987,122 + Sama_0803 0.29 +1.1 987,122 + Sama_0803 0.29 +0.1 987,202 + Sama_0803 0.42 -0.7 987,222 + Sama_0803 0.45 -1.3 987,223 - Sama_0803 0.45 -1.0 987,224 + Sama_0803 0.45 +1.4 987,230 + Sama_0803 0.46 +1.2 987,230 + Sama_0803 0.46 +0.2 987,230 + Sama_0803 0.46 +0.8 987,230 + Sama_0803 0.46 -1.2 987,359 + Sama_0803 0.67 -0.5 987,359 + Sama_0803 0.67 -0.0 987,359 + Sama_0803 0.67 +0.5 987,359 + Sama_0803 0.67 -1.3 987,359 + Sama_0803 0.67 +0.1 987,360 - Sama_0803 0.67 +0.2 987,360 - Sama_0803 0.67 -0.2 987,360 - Sama_0803 0.67 +0.4 987,360 - Sama_0803 0.67 -0.8 987,360 - Sama_0803 0.67 +2.0 987,360 - Sama_0803 0.67 -0.2 987,390 + Sama_0803 0.72 +0.2 987,391 - Sama_0803 0.72 -1.9 987,391 - Sama_0803 0.72 -1.2 987,407 + Sama_0803 0.74 -0.3 987,435 - Sama_0803 0.79 -1.1 987,460 + Sama_0803 0.83 -1.5 987,460 + Sama_0803 0.83 +0.8 987,460 + Sama_0803 0.83 -0.7 987,460 + Sama_0803 0.83 -2.0 987,460 + Sama_0803 0.83 -1.8 987,460 + Sama_0803 0.83 -0.2 987,461 - Sama_0803 0.83 -1.0 987,461 - Sama_0803 0.83 -0.0 987,464 + Sama_0803 0.83 -1.3 987,464 + Sama_0803 0.83 -0.8 987,464 + Sama_0803 0.83 +0.2 987,464 + Sama_0803 0.83 +0.7 987,465 - Sama_0803 0.83 +0.4 987,465 - Sama_0803 0.83 -0.0 987,465 - Sama_0803 0.83 -1.4 987,465 - Sama_0803 0.83 +0.2 987,465 - Sama_0803 0.83 +0.9 987,465 - Sama_0803 0.83 -2.3 987,515 + +2.0 987,515 + -0.3 987,516 - -0.7 987,516 - -0.9 987,522 + +1.4 987,523 - +1.4 987,568 + -2.3 987,568 + +2.2 987,568 + -1.1 987,569 - -0.8 987,578 + +1.4 987,578 + +1.0 987,579 - -2.4 987,579 - +1.8 987,579 - +0.4 987,579 - -1.1 987,582 + -1.5 987,582 + -0.1 987,582 + -2.3 987,583 - -0.0 987,583 - -1.9 987,595 - +1.1 987,635 + -0.9 987,635 + +1.4 987,635 + -0.2 987,635 + -1.1 987,635 + +1.5 987,636 - -0.2 987,636 - -0.2 987,636 - -1.1 987,636 - +0.2 987,636 - -1.3 987,646 + +1.5 987,647 - -0.0 987,661 + -1.8 987,676 + +0.8 987,763 + +0.3 987,764 - -1.1 987,793 + Sama_0804 0.11 +1.4 987,818 + Sama_0804 0.13 -0.8 987,818 + Sama_0804 0.13 -0.6 987,825 - Sama_0804 0.13 +1.0 987,833 + Sama_0804 0.13 +0.1 987,833 + Sama_0804 0.13 +0.4 987,833 + Sama_0804 0.13 +1.0 987,833 + Sama_0804 0.13 -2.3 987,834 - Sama_0804 0.13 -0.5 987,866 + Sama_0804 0.15 -1.0 987,909 + Sama_0804 0.18 -1.1 987,909 + Sama_0804 0.18 -0.0 987,910 - Sama_0804 0.18 -1.0 987,910 - Sama_0804 0.18 -0.6 987,910 - Sama_0804 0.18 -1.6 987,910 - Sama_0804 0.18 -0.6 987,910 - Sama_0804 0.18 -0.9 987,971 + Sama_0804 0.21 -0.0 988,307 + Sama_0804 0.40 -0.2 988,391 + Sama_0804 0.45 +1.2 988,483 + Sama_0804 0.50 -1.8 988,562 + Sama_0804 0.55 -0.5
Or see this region's nucleotide sequence