Strain Fitness in Shewanella amazonensis SB2B around Sama_0780

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0779 and Sama_0780 are separated by 71 nucleotidesSama_0780 and Sama_0781 are separated by 158 nucleotides Sama_0779: Sama_0779 - glutamyl-tRNA synthetase domain-containing protein (RefSeq), at 961,689 to 962,561 _0779 Sama_0780: Sama_0780 - TraR/DksA family transcriptional regulator (RefSeq), at 962,633 to 963,076 _0780 Sama_0781: Sama_0781 - sugar fermentation stimulation protein A (RefSeq), at 963,235 to 963,948 _0781 Position (kb) 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 961.646 kb on + strandat 961.647 kb on - strandat 961.667 kb on + strandat 961.667 kb on + strandat 961.690 kb on + strandat 962.054 kb on - strand, within Sama_0779at 962.059 kb on + strand, within Sama_0779at 962.084 kb on + strand, within Sama_0779at 962.085 kb on - strand, within Sama_0779at 962.119 kb on - strand, within Sama_0779at 962.165 kb on + strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.172 kb on - strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.175 kb on + strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.176 kb on - strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.218 kb on + strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.219 kb on - strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.229 kb on + strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.230 kb on - strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.421 kb on + strand, within Sama_0779at 962.422 kb on - strand, within Sama_0779at 962.554 kb on + strandat 962.554 kb on + strandat 962.554 kb on + strandat 962.554 kb on + strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.809 kb on + strand, within Sama_0780at 962.996 kb on - strand, within Sama_0780at 962.997 kb on + strand, within Sama_0780at 962.997 kb on + strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 963.030 kb on - strand, within Sama_0780at 963.076 kb on + strandat 963.077 kb on - strandat 963.077 kb on - strandat 963.117 kb on + strandat 963.117 kb on + strandat 963.118 kb on - strandat 963.129 kb on + strandat 963.133 kb on + strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.166 kb on + strandat 963.166 kb on + strandat 963.167 kb on - strandat 963.182 kb on - strandat 963.271 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.306 kb on - strandat 963.306 kb on - strandat 963.357 kb on - strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.370 kb on - strand, within Sama_0781at 963.385 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.550 kb on - strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.552 kb on - strand, within Sama_0781at 963.583 kb on + strand, within Sama_0781at 963.584 kb on - strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.638 kb on + strand, within Sama_0781at 963.655 kb on + strand, within Sama_0781at 963.655 kb on + strand, within Sama_0781at 963.708 kb on + strand, within Sama_0781at 963.761 kb on + strand, within Sama_0781at 963.761 kb on + strand, within Sama_0781at 963.762 kb on - strand, within Sama_0781at 963.762 kb on - strand, within Sama_0781at 963.812 kb on + strand, within Sama_0781at 963.813 kb on - strand, within Sama_0781at 963.900 kb on + strandat 963.901 kb on - strandat 963.901 kb on - strandat 963.902 kb on + strandat 963.902 kb on + strandat 963.903 kb on - strandat 963.903 kb on - strandat 963.942 kb on - strandat 963.942 kb on - strandat 963.942 kb on - strandat 964.052 kb on - strandat 964.056 kb on + strandat 964.056 kb on + strandat 964.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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961,646 + +1.9
961,647 - -0.9
961,667 + -1.4
961,667 + -1.4
961,690 + +1.7
962,054 - Sama_0779 0.42 +1.5
962,059 + Sama_0779 0.42 -0.6
962,084 + Sama_0779 0.45 -1.1
962,085 - Sama_0779 0.45 +0.4
962,119 - Sama_0779 0.49 -0.4
962,165 + Sama_0779 0.55 +0.7
962,172 - Sama_0779 0.55 -1.5
962,172 - Sama_0779 0.55 -0.5
962,172 - Sama_0779 0.55 +1.0
962,172 - Sama_0779 0.55 +0.8
962,172 - Sama_0779 0.55 +1.7
962,172 - Sama_0779 0.55 -1.0
962,172 - Sama_0779 0.55 -0.0
962,175 + Sama_0779 0.56 -0.9
962,175 + Sama_0779 0.56 +0.1
962,175 + Sama_0779 0.56 -0.4
962,175 + Sama_0779 0.56 +1.1
962,175 + Sama_0779 0.56 +0.1
962,175 + Sama_0779 0.56 +1.1
962,175 + Sama_0779 0.56 -0.3
962,176 - Sama_0779 0.56 +0.3
962,176 - Sama_0779 0.56 +1.3
962,176 - Sama_0779 0.56 -1.7
962,176 - Sama_0779 0.56 -0.4
962,176 - Sama_0779 0.56 -1.5
962,218 + Sama_0779 0.61 +1.5
962,218 + Sama_0779 0.61 -1.3
962,218 + Sama_0779 0.61 +0.7
962,219 - Sama_0779 0.61 -0.6
962,219 - Sama_0779 0.61 +0.7
962,219 - Sama_0779 0.61 -0.1
962,219 - Sama_0779 0.61 +0.2
962,219 - Sama_0779 0.61 +0.0
962,229 + Sama_0779 0.62 +0.5
962,229 + Sama_0779 0.62 -1.1
962,229 + Sama_0779 0.62 -0.5
962,229 + Sama_0779 0.62 -1.0
962,229 + Sama_0779 0.62 -0.6
962,229 + Sama_0779 0.62 +0.7
962,230 - Sama_0779 0.62 -0.1
962,230 - Sama_0779 0.62 -0.9
962,230 - Sama_0779 0.62 +2.1
962,230 - Sama_0779 0.62 +1.7
962,230 - Sama_0779 0.62 -1.7
962,230 - Sama_0779 0.62 +1.1
962,230 - Sama_0779 0.62 -2.3
962,230 - Sama_0779 0.62 +0.3
962,308 + Sama_0779 0.71 -0.7
962,308 + Sama_0779 0.71 -0.9
962,308 + Sama_0779 0.71 -0.9
962,308 + Sama_0779 0.71 -0.3
962,308 + Sama_0779 0.71 -0.4
962,332 + Sama_0779 0.74 -1.0
962,332 + Sama_0779 0.74 -2.0
962,332 + Sama_0779 0.74 -0.9
962,332 + Sama_0779 0.74 -0.3
962,332 + Sama_0779 0.74 -2.0
962,332 + Sama_0779 0.74 -0.5
962,333 - Sama_0779 0.74 -1.1
962,333 - Sama_0779 0.74 +1.3
962,333 - Sama_0779 0.74 +2.1
962,333 - Sama_0779 0.74 -0.6
962,333 - Sama_0779 0.74 +1.1
962,333 - Sama_0779 0.74 +1.8
962,333 - Sama_0779 0.74 -0.1
962,421 + Sama_0779 0.84 -0.3
962,422 - Sama_0779 0.84 +0.7
962,554 + -0.6
962,554 + -0.3
962,554 + +0.5
962,554 + +0.3
962,555 - -1.5
962,555 - -0.4
962,555 - +0.7
962,555 - -1.1
962,555 - -0.3
962,809 + Sama_0780 0.40 +1.5
962,996 - Sama_0780 0.82 -0.4
962,997 + Sama_0780 0.82 -1.1
962,997 + Sama_0780 0.82 -1.0
962,998 - Sama_0780 0.82 -0.8
962,998 - Sama_0780 0.82 -0.7
962,998 - Sama_0780 0.82 -0.7
962,998 - Sama_0780 0.82 -1.1
962,998 - Sama_0780 0.82 -0.1
962,998 - Sama_0780 0.82 -0.4
962,998 - Sama_0780 0.82 -1.6
962,998 - Sama_0780 0.82 -3.1
963,030 - Sama_0780 0.89 -1.2
963,076 + -1.0
963,077 - -1.7
963,077 - -1.3
963,117 + +0.1
963,117 + +0.1
963,118 - -1.6
963,129 + -0.1
963,133 + +0.7
963,134 - -1.3
963,134 - -0.6
963,134 - -1.0
963,134 - -0.9
963,134 - -1.8
963,166 + +0.7
963,166 + +0.5
963,167 - +0.1
963,182 - +0.7
963,271 + -1.5
963,297 + -0.5
963,297 + -0.6
963,297 + +1.2
963,297 + -0.6
963,297 + -1.9
963,297 + +1.8
963,297 + -0.1
963,298 - -1.3
963,298 - -0.8
963,298 - -0.8
963,298 - -0.6
963,298 - -0.0
963,306 - +2.5
963,306 - +1.2
963,357 - Sama_0781 0.17 -1.0
963,367 + Sama_0781 0.18 -1.8
963,367 + Sama_0781 0.18 +1.7
963,367 + Sama_0781 0.18 +3.1
963,367 + Sama_0781 0.18 +0.5
963,367 + Sama_0781 0.18 +1.3
963,367 + Sama_0781 0.18 -1.6
963,367 + Sama_0781 0.18 -0.5
963,367 + Sama_0781 0.18 +1.0
963,367 + Sama_0781 0.18 -0.6
963,367 + Sama_0781 0.18 +0.2
963,367 + Sama_0781 0.18 -1.1
963,368 - Sama_0781 0.19 -1.1
963,368 - Sama_0781 0.19 +0.5
963,368 - Sama_0781 0.19 +0.2
963,368 - Sama_0781 0.19 +0.5
963,368 - Sama_0781 0.19 +1.5
963,368 - Sama_0781 0.19 -0.2
963,368 - Sama_0781 0.19 +0.5
963,368 - Sama_0781 0.19 +0.2
963,368 - Sama_0781 0.19 +0.1
963,368 - Sama_0781 0.19 +0.9
963,370 - Sama_0781 0.19 +2.1
963,385 + Sama_0781 0.21 +0.1
963,547 + Sama_0781 0.44 -1.6
963,547 + Sama_0781 0.44 +1.1
963,547 + Sama_0781 0.44 +0.9
963,547 + Sama_0781 0.44 -1.1
963,547 + Sama_0781 0.44 -0.1
963,547 + Sama_0781 0.44 -2.0
963,548 - Sama_0781 0.44 -0.5
963,548 - Sama_0781 0.44 +0.2
963,548 - Sama_0781 0.44 +0.2
963,548 - Sama_0781 0.44 -1.6
963,548 - Sama_0781 0.44 +0.5
963,548 - Sama_0781 0.44 +2.3
963,548 - Sama_0781 0.44 +0.7
963,548 - Sama_0781 0.44 -1.1
963,548 - Sama_0781 0.44 +1.3
963,548 - Sama_0781 0.44 +0.6
963,548 - Sama_0781 0.44 -1.8
963,548 - Sama_0781 0.44 +0.5
963,548 - Sama_0781 0.44 -0.8
963,549 + Sama_0781 0.44 -0.6
963,549 + Sama_0781 0.44 -1.0
963,549 + Sama_0781 0.44 -0.2
963,549 + Sama_0781 0.44 -0.2
963,550 - Sama_0781 0.44 -1.2
963,551 + Sama_0781 0.44 -1.0
963,551 + Sama_0781 0.44 -1.0
963,551 + Sama_0781 0.44 -0.8
963,552 - Sama_0781 0.44 -0.5
963,583 + Sama_0781 0.49 -1.1
963,584 - Sama_0781 0.49 -0.3
963,611 + Sama_0781 0.53 -0.0
963,611 + Sama_0781 0.53 -0.1
963,611 + Sama_0781 0.53 -0.4
963,611 + Sama_0781 0.53 +3.1
963,612 - Sama_0781 0.53 +2.2
963,612 - Sama_0781 0.53 -0.6
963,612 - Sama_0781 0.53 -0.1
963,612 - Sama_0781 0.53 +3.4
963,638 + Sama_0781 0.56 +2.6
963,655 + Sama_0781 0.59 -0.6
963,655 + Sama_0781 0.59 +2.6
963,708 + Sama_0781 0.66 -1.3
963,761 + Sama_0781 0.74 -0.3
963,761 + Sama_0781 0.74 -0.8
963,762 - Sama_0781 0.74 +2.1
963,762 - Sama_0781 0.74 -0.5
963,812 + Sama_0781 0.81 -1.8
963,813 - Sama_0781 0.81 +0.8
963,900 + +0.2
963,901 - -0.8
963,901 - -0.6
963,902 + -0.9
963,902 + +0.4
963,903 - -0.4
963,903 - -1.4
963,942 - +0.1
963,942 - -0.2
963,942 - +0.8
964,052 - +0.4
964,056 + -0.3
964,056 + +0.5
964,057 - -1.4

Or see this region's nucleotide sequence