Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0715 and Sama_0716 are separated by 75 nucleotides Sama_0716 and Sama_0717 are separated by 85 nucleotides Sama_0717 and Sama_0718 are separated by 284 nucleotides
Sama_0715: Sama_0715 - hypothetical protein (RefSeq), at 879,449 to 879,919
_0715
Sama_0716: Sama_0716 - hypothetical protein (RefSeq), at 879,995 to 880,399
_0716
Sama_0717: Sama_0717 - hypothetical protein (RefSeq), at 880,485 to 882,251
_0717
Sama_0718: Sama_0718 - hypothetical protein (RefSeq), at 882,536 to 883,927
_0718
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.551 kb on - strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.568 kb on - strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.676 kb on - strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.684 kb on - strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.847 kb on + strand, within Sama_0715 at 879.896 kb on + strand at 879.896 kb on + strand at 879.896 kb on + strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.918 kb on - strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.933 kb on + strand at 879.947 kb on + strand at 879.950 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.008 kb on - strand at 880.202 kb on + strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.233 kb on - strand, within Sama_0716 at 880.262 kb on + strand, within Sama_0716 at 880.263 kb on - strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.276 kb on - strand, within Sama_0716 at 880.318 kb on + strand, within Sama_0716 at 880.319 kb on - strand, within Sama_0716 at 880.380 kb on + strand at 880.381 kb on - strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.392 kb on - strand at 880.392 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.440 kb on - strand at 880.445 kb on + strand at 880.445 kb on + strand at 880.446 kb on - strand at 880.446 kb on - strand at 880.471 kb on + strand at 880.472 kb on - strand at 880.472 kb on - strand at 880.500 kb on + strand at 880.528 kb on + strand at 880.528 kb on + strand at 880.529 kb on - strand at 880.571 kb on + strand at 880.572 kb on - strand at 880.667 kb on - strand, within Sama_0717 at 880.667 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717 at 880.985 kb on + strand, within Sama_0717 at 880.986 kb on - strand, within Sama_0717 at 880.986 kb on - strand, within Sama_0717 at 881.048 kb on + strand, within Sama_0717 at 881.095 kb on - strand, within Sama_0717 at 881.159 kb on + strand, within Sama_0717 at 881.160 kb on - strand, within Sama_0717 at 881.160 kb on - strand, within Sama_0717 at 881.160 kb on - strand, within Sama_0717 at 881.233 kb on + strand, within Sama_0717 at 881.233 kb on + strand, within Sama_0717 at 881.234 kb on - strand, within Sama_0717 at 881.303 kb on - strand, within Sama_0717 at 881.340 kb on + strand, within Sama_0717 at 881.340 kb on + strand, within Sama_0717 at 881.340 kb on + strand, within Sama_0717 at 881.340 kb on + strand, within Sama_0717 at 881.340 kb on + strand, within Sama_0717 at 881.341 kb on - strand, within Sama_0717 at 881.341 kb on - strand, within Sama_0717 at 881.341 kb on - strand, within Sama_0717 at 881.341 kb on - strand, within Sama_0717 at 881.342 kb on + strand, within Sama_0717 at 881.342 kb on + strand, within Sama_0717 at 881.343 kb on - strand, within Sama_0717 at 881.343 kb on - strand, within Sama_0717 at 881.343 kb on - strand, within Sama_0717 at 881.343 kb on - strand, within Sama_0717 at 881.670 kb on + strand, within Sama_0717 at 881.670 kb on + strand, within Sama_0717 at 881.670 kb on + strand, within Sama_0717 at 881.670 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.682 kb on + strand, within Sama_0717 at 881.683 kb on - strand, within Sama_0717 at 881.683 kb on - strand, within Sama_0717 at 881.683 kb on - strand, within Sama_0717 at 881.683 kb on - strand, within Sama_0717 at 881.768 kb on + strand, within Sama_0717 at 881.768 kb on + strand, within Sama_0717 at 881.769 kb on - strand, within Sama_0717 at 881.769 kb on - strand, within Sama_0717 at 881.802 kb on + strand, within Sama_0717 at 881.814 kb on + strand, within Sama_0717 at 881.814 kb on + strand, within Sama_0717 at 881.833 kb on + strand, within Sama_0717 at 881.833 kb on + strand, within Sama_0717 at 881.833 kb on + strand, within Sama_0717 at 881.833 kb on + strand, within Sama_0717 at 881.834 kb on - strand, within Sama_0717 at 881.834 kb on - strand, within Sama_0717 at 881.834 kb on - strand, within Sama_0717 at 881.834 kb on - strand, within Sama_0717 at 881.834 kb on - strand, within Sama_0717 at 881.890 kb on + strand, within Sama_0717 at 881.947 kb on - strand, within Sama_0717 at 881.973 kb on - strand, within Sama_0717 at 881.990 kb on - strand, within Sama_0717 at 882.012 kb on + strand, within Sama_0717 at 882.013 kb on - strand, within Sama_0717 at 882.013 kb on - strand, within Sama_0717 at 882.013 kb on - strand, within Sama_0717 at 882.114 kb on + strand at 882.115 kb on - strand at 882.115 kb on - strand at 882.161 kb on + strand at 882.161 kb on + strand at 882.161 kb on + strand at 882.162 kb on - strand at 882.162 kb on - strand at 882.196 kb on + strand at 882.196 kb on + strand at 882.196 kb on + strand at 882.197 kb on - strand at 882.197 kb on - strand at 882.197 kb on - strand at 882.202 kb on - strand at 882.253 kb on - strand at 882.263 kb on + strand at 882.264 kb on - strand at 882.273 kb on + strand at 882.305 kb on - strand at 882.350 kb on + strand at 882.350 kb on + strand at 882.351 kb on - strand at 882.354 kb on + strand at 882.366 kb on + strand at 882.366 kb on + strand at 882.366 kb on + strand at 882.367 kb on - strand at 882.447 kb on + strand at 882.447 kb on + strand at 882.466 kb on - strand at 882.486 kb on + strand at 882.486 kb on + strand at 882.486 kb on + strand at 882.487 kb on - strand at 882.487 kb on - strand at 882.487 kb on - strand at 882.511 kb on - strand at 882.520 kb on + strand at 882.521 kb on - strand at 882.521 kb on - strand at 882.535 kb on + strand at 882.536 kb on - strand at 882.536 kb on - strand at 882.565 kb on + strand at 882.565 kb on + strand at 882.565 kb on + strand at 882.566 kb on - strand at 882.618 kb on - strand at 882.739 kb on + strand, within Sama_0718 at 882.867 kb on + strand, within Sama_0718 at 882.904 kb on + strand, within Sama_0718 at 882.905 kb on - strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.989 kb on + strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 882.990 kb on - strand, within Sama_0718 at 883.004 kb on - strand, within Sama_0718 at 883.011 kb on - strand, within Sama_0718 at 883.040 kb on + strand, within Sama_0718 at 883.089 kb on + strand, within Sama_0718 at 883.090 kb on - strand, within Sama_0718 at 883.183 kb on - strand, within Sama_0718 at 883.220 kb on - strand, within Sama_0718
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 879,551 - Sama_0715 0.22 +1.1 879,567 + Sama_0715 0.25 -0.8 879,567 + Sama_0715 0.25 -0.5 879,568 - Sama_0715 0.25 -1.0 879,635 + Sama_0715 0.39 -0.4 879,635 + Sama_0715 0.39 +1.0 879,635 + Sama_0715 0.39 +0.4 879,635 + Sama_0715 0.39 -1.1 879,635 + Sama_0715 0.39 +1.1 879,635 + Sama_0715 0.39 -1.5 879,635 + Sama_0715 0.39 -0.1 879,635 + Sama_0715 0.39 -1.9 879,635 + Sama_0715 0.39 +1.5 879,635 + Sama_0715 0.39 +0.2 879,635 + Sama_0715 0.39 -1.2 879,635 + Sama_0715 0.39 -1.0 879,636 - Sama_0715 0.40 +0.5 879,636 - Sama_0715 0.40 -1.1 879,636 - Sama_0715 0.40 +0.1 879,636 - Sama_0715 0.40 -1.1 879,636 - Sama_0715 0.40 -1.2 879,636 - Sama_0715 0.40 -0.2 879,636 - Sama_0715 0.40 -1.0 879,675 + Sama_0715 0.48 -0.2 879,675 + Sama_0715 0.48 -0.7 879,676 - Sama_0715 0.48 -0.2 879,683 + Sama_0715 0.50 -0.8 879,683 + Sama_0715 0.50 +0.1 879,684 - Sama_0715 0.50 -1.8 879,759 + Sama_0715 0.66 +0.1 879,759 + Sama_0715 0.66 -0.6 879,760 - Sama_0715 0.66 -0.3 879,760 - Sama_0715 0.66 -1.0 879,809 + Sama_0715 0.76 +0.1 879,809 + Sama_0715 0.76 -0.5 879,810 - Sama_0715 0.77 -0.6 879,810 - Sama_0715 0.77 -2.0 879,847 + Sama_0715 0.85 +0.7 879,896 + -0.8 879,896 + +0.3 879,896 + -1.5 879,897 - -1.3 879,897 - -2.2 879,897 - -0.5 879,902 + -1.0 879,902 + -0.4 879,903 - -0.5 879,903 - -0.0 879,903 - -0.6 879,918 - -0.9 879,931 + -0.0 879,932 - -1.1 879,932 - +0.3 879,933 + -1.4 879,947 + -0.0 879,950 + -0.7 880,007 + -0.0 880,007 + -0.0 880,007 + +0.0 880,007 + +0.2 880,008 - +0.7 880,202 + Sama_0716 0.51 -1.5 880,203 - Sama_0716 0.51 -0.7 880,203 - Sama_0716 0.51 +0.0 880,232 + Sama_0716 0.59 -0.5 880,232 + Sama_0716 0.59 +0.2 880,232 + Sama_0716 0.59 +1.7 880,232 + Sama_0716 0.59 -0.5 880,233 - Sama_0716 0.59 +1.0 880,262 + Sama_0716 0.66 +0.1 880,263 - Sama_0716 0.66 -0.0 880,275 + Sama_0716 0.69 +0.1 880,275 + Sama_0716 0.69 +1.5 880,275 + Sama_0716 0.69 -0.1 880,275 + Sama_0716 0.69 -1.4 880,276 - Sama_0716 0.69 +0.3 880,318 + Sama_0716 0.80 +0.9 880,319 - Sama_0716 0.80 +0.1 880,380 + -0.2 880,381 - -1.0 880,391 + -0.6 880,391 + -0.7 880,391 + +0.8 880,391 + -1.5 880,392 - +1.5 880,392 - +1.0 880,422 - -1.2 880,422 - +0.4 880,422 - -0.7 880,440 - -0.2 880,445 + -0.2 880,445 + -1.1 880,446 - +0.8 880,446 - +0.5 880,471 + -2.0 880,472 - -0.6 880,472 - -0.8 880,500 + -2.4 880,528 + -1.2 880,528 + -1.5 880,529 - +0.4 880,571 + -0.8 880,572 - +0.3 880,667 - Sama_0717 0.10 -0.5 880,667 - Sama_0717 0.10 -0.3 880,768 - Sama_0717 0.16 -1.0 880,768 - Sama_0717 0.16 -1.6 880,985 + Sama_0717 0.28 -1.5 880,986 - Sama_0717 0.28 -0.8 880,986 - Sama_0717 0.28 -1.6 881,048 + Sama_0717 0.32 +0.5 881,095 - Sama_0717 0.35 +0.7 881,159 + Sama_0717 0.38 +1.1 881,160 - Sama_0717 0.38 +0.2 881,160 - Sama_0717 0.38 -0.6 881,160 - Sama_0717 0.38 -0.7 881,233 + Sama_0717 0.42 +0.4 881,233 + Sama_0717 0.42 +0.5 881,234 - Sama_0717 0.42 +1.3 881,303 - Sama_0717 0.46 -1.3 881,340 + Sama_0717 0.48 +1.1 881,340 + Sama_0717 0.48 +0.0 881,340 + Sama_0717 0.48 +0.8 881,340 + Sama_0717 0.48 +1.8 881,340 + Sama_0717 0.48 +2.5 881,341 - Sama_0717 0.48 +0.3 881,341 - Sama_0717 0.48 +0.5 881,341 - Sama_0717 0.48 +0.8 881,341 - Sama_0717 0.48 +0.1 881,342 + Sama_0717 0.49 -0.8 881,342 + Sama_0717 0.49 -0.6 881,343 - Sama_0717 0.49 +0.4 881,343 - Sama_0717 0.49 -1.3 881,343 - Sama_0717 0.49 +0.3 881,343 - Sama_0717 0.49 +1.5 881,670 + Sama_0717 0.67 -0.5 881,670 + Sama_0717 0.67 -1.1 881,670 + Sama_0717 0.67 -1.2 881,670 + Sama_0717 0.67 -1.3 881,682 + Sama_0717 0.68 +0.8 881,682 + Sama_0717 0.68 -1.1 881,682 + Sama_0717 0.68 -0.5 881,682 + Sama_0717 0.68 +0.3 881,682 + Sama_0717 0.68 -0.3 881,682 + Sama_0717 0.68 +1.5 881,682 + Sama_0717 0.68 -1.7 881,683 - Sama_0717 0.68 +0.5 881,683 - Sama_0717 0.68 +0.1 881,683 - Sama_0717 0.68 +0.5 881,683 - Sama_0717 0.68 -1.8 881,768 + Sama_0717 0.73 -0.8 881,768 + Sama_0717 0.73 +0.4 881,769 - Sama_0717 0.73 +0.8 881,769 - Sama_0717 0.73 -0.9 881,802 + Sama_0717 0.75 -0.6 881,814 + Sama_0717 0.75 -1.4 881,814 + Sama_0717 0.75 -1.6 881,833 + Sama_0717 0.76 -0.5 881,833 + Sama_0717 0.76 +0.8 881,833 + Sama_0717 0.76 +0.1 881,833 + Sama_0717 0.76 +1.5 881,834 - Sama_0717 0.76 +0.3 881,834 - Sama_0717 0.76 +1.3 881,834 - Sama_0717 0.76 -1.5 881,834 - Sama_0717 0.76 -1.4 881,834 - Sama_0717 0.76 -1.0 881,890 + Sama_0717 0.80 +0.5 881,947 - Sama_0717 0.83 +0.1 881,973 - Sama_0717 0.84 -1.1 881,990 - Sama_0717 0.85 -0.9 882,012 + Sama_0717 0.86 -1.5 882,013 - Sama_0717 0.86 +0.5 882,013 - Sama_0717 0.86 +1.5 882,013 - Sama_0717 0.86 -0.9 882,114 + -0.5 882,115 - -0.0 882,115 - +2.5 882,161 + -0.0 882,161 + +1.5 882,161 + -0.9 882,162 - +0.3 882,162 - -0.0 882,196 + -0.2 882,196 + -1.1 882,196 + -1.0 882,197 - +0.1 882,197 - -0.8 882,197 - -1.2 882,202 - +0.3 882,253 - -0.0 882,263 + -0.9 882,264 - +0.3 882,273 + +0.5 882,305 - -0.3 882,350 + -1.1 882,350 + +2.3 882,351 - -0.3 882,354 + +0.2 882,366 + -2.8 882,366 + +0.0 882,366 + +2.0 882,367 - -0.6 882,447 + +0.5 882,447 + +1.0 882,466 - +0.8 882,486 + +1.1 882,486 + -0.3 882,486 + +1.1 882,487 - -0.7 882,487 - +0.5 882,487 - +0.7 882,511 - -0.3 882,520 + -0.9 882,521 - -1.4 882,521 - +0.5 882,535 + -0.2 882,536 - +0.4 882,536 - -0.3 882,565 + -0.0 882,565 + +0.2 882,565 + -0.6 882,566 - -0.0 882,618 - -0.5 882,739 + Sama_0718 0.15 -1.9 882,867 + Sama_0718 0.24 -0.6 882,904 + Sama_0718 0.26 -0.8 882,905 - Sama_0718 0.27 +1.0 882,989 + Sama_0718 0.33 +1.1 882,989 + Sama_0718 0.33 -0.5 882,989 + Sama_0718 0.33 -1.0 882,989 + Sama_0718 0.33 +0.5 882,989 + Sama_0718 0.33 +0.8 882,989 + Sama_0718 0.33 -0.8 882,989 + Sama_0718 0.33 -0.6 882,989 + Sama_0718 0.33 +0.8 882,989 + Sama_0718 0.33 +1.1 882,989 + Sama_0718 0.33 -0.7 882,990 - Sama_0718 0.33 +1.5 882,990 - Sama_0718 0.33 -1.5 882,990 - Sama_0718 0.33 +0.8 882,990 - Sama_0718 0.33 -0.7 882,990 - Sama_0718 0.33 +0.7 882,990 - Sama_0718 0.33 +0.1 882,990 - Sama_0718 0.33 -0.3 882,990 - Sama_0718 0.33 -0.6 882,990 - Sama_0718 0.33 +1.8 882,990 - Sama_0718 0.33 +0.3 882,990 - Sama_0718 0.33 +0.5 883,004 - Sama_0718 0.34 -0.2 883,011 - Sama_0718 0.34 +0.5 883,040 + Sama_0718 0.36 -0.7 883,089 + Sama_0718 0.40 -1.2 883,090 - Sama_0718 0.40 +0.8 883,183 - Sama_0718 0.46 -0.0 883,220 - Sama_0718 0.49 +0.3
Or see this region's nucleotide sequence