Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0675 and Sama_0676 are separated by 309 nucleotides Sama_0676 and Sama_0677 are separated by 112 nucleotides
Sama_0675: Sama_0675 - AcrB/AcrD/AcrF family transporter (RefSeq), at 831,444 to 834,530
_0675
Sama_0676: Sama_0676 - hypothetical protein (RefSeq), at 834,840 to 835,175
_0676
Sama_0677: Sama_0677 - U32 family peptidase (RefSeq), at 835,288 to 837,207
_0677
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 834.059 kb on + strand, within Sama_0675 at 834.060 kb on - strand, within Sama_0675 at 834.060 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.087 kb on - strand, within Sama_0675 at 834.099 kb on - strand, within Sama_0675 at 834.099 kb on - strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.164 kb on - strand, within Sama_0675 at 834.186 kb on - strand, within Sama_0675 at 834.227 kb on + strand at 834.227 kb on + strand at 834.227 kb on + strand at 834.228 kb on - strand at 834.228 kb on - strand at 834.238 kb on + strand at 834.238 kb on + strand at 834.309 kb on - strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.332 kb on - strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.374 kb on + strand at 834.468 kb on + strand at 834.468 kb on + strand at 834.468 kb on + strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.487 kb on + strand at 834.487 kb on + strand at 834.488 kb on - strand at 834.488 kb on - strand at 834.502 kb on - strand at 834.531 kb on + strand at 834.531 kb on + strand at 834.531 kb on + strand at 834.532 kb on - strand at 834.532 kb on - strand at 834.544 kb on + strand at 834.545 kb on - strand at 834.581 kb on + strand at 834.611 kb on + strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.757 kb on + strand at 834.757 kb on + strand at 834.757 kb on + strand at 834.758 kb on - strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.840 kb on - strand at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.950 kb on + strand, within Sama_0676 at 834.951 kb on - strand, within Sama_0676 at 834.969 kb on + strand, within Sama_0676 at 835.027 kb on - strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.041 kb on - strand, within Sama_0676 at 835.065 kb on + strand, within Sama_0676 at 835.065 kb on + strand, within Sama_0676 at 835.066 kb on - strand, within Sama_0676 at 835.066 kb on - strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.130 kb on - strand, within Sama_0676 at 835.146 kb on + strand at 835.147 kb on - strand at 835.147 kb on - strand at 835.147 kb on - strand at 835.165 kb on + strand at 835.198 kb on + strand at 835.198 kb on + strand at 835.199 kb on - strand at 835.199 kb on - strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.228 kb on + strand at 835.228 kb on + strand at 835.228 kb on + strand at 835.293 kb on + strand at 835.294 kb on - strand at 835.294 kb on - strand at 835.314 kb on + strand at 835.314 kb on + strand at 835.369 kb on - strand at 835.371 kb on + strand at 835.371 kb on + strand at 835.372 kb on - strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.448 kb on - strand at 835.448 kb on - strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.534 kb on + strand, within Sama_0677 at 835.535 kb on - strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.654 kb on - strand, within Sama_0677 at 835.654 kb on - strand, within Sama_0677 at 835.842 kb on + strand, within Sama_0677 at 835.843 kb on - strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.885 kb on - strand, within Sama_0677 at 835.885 kb on - strand, within Sama_0677 at 835.897 kb on + strand, within Sama_0677 at 835.897 kb on + strand, within Sama_0677 at 835.898 kb on - strand, within Sama_0677 at 835.898 kb on - strand, within Sama_0677 at 835.899 kb on + strand, within Sama_0677 at 835.900 kb on - strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.948 kb on - strand, within Sama_0677 at 835.965 kb on + strand, within Sama_0677 at 836.061 kb on + strand, within Sama_0677 at 836.105 kb on - strand, within Sama_0677 at 836.109 kb on - strand, within Sama_0677
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 834,059 + Sama_0675 0.85 -1.0 834,060 - Sama_0675 0.85 -0.3 834,060 - Sama_0675 0.85 +0.1 834,077 - Sama_0675 0.85 +0.1 834,077 - Sama_0675 0.85 +0.1 834,077 - Sama_0675 0.85 -0.1 834,077 - Sama_0675 0.85 +1.5 834,087 - Sama_0675 0.86 -0.8 834,099 - Sama_0675 0.86 +1.1 834,099 - Sama_0675 0.86 +1.1 834,143 + Sama_0675 0.87 -0.1 834,143 + Sama_0675 0.87 -0.2 834,143 + Sama_0675 0.87 -0.7 834,164 - Sama_0675 0.88 -0.6 834,186 - Sama_0675 0.89 -1.4 834,227 + +1.3 834,227 + +0.6 834,227 + +0.9 834,228 - +0.1 834,228 - -0.2 834,238 + +0.6 834,238 + -1.0 834,309 - -0.7 834,331 + -1.9 834,331 + -0.8 834,331 + -1.0 834,331 + -1.9 834,332 - -0.2 834,335 + +1.6 834,335 + -0.1 834,335 + -0.3 834,335 + -0.6 834,335 + -0.8 834,335 + -1.3 834,335 + +0.1 834,335 + -1.2 834,336 - +1.1 834,336 - -1.2 834,336 - +1.1 834,336 - -0.2 834,336 - -0.9 834,336 - -0.4 834,336 - -0.4 834,336 - +0.5 834,374 + -2.3 834,468 + -0.1 834,468 + +1.1 834,468 + -0.9 834,469 - -0.3 834,469 - +0.0 834,469 - -0.6 834,469 - +0.1 834,487 + -0.5 834,487 + -0.9 834,488 - +0.1 834,488 - +0.3 834,502 - -0.3 834,531 + -1.9 834,531 + -0.0 834,531 + -1.9 834,532 - -0.9 834,532 - +0.3 834,544 + -0.8 834,545 - +1.3 834,581 + +0.1 834,611 + +0.2 834,679 - +0.7 834,679 - +1.1 834,679 - +1.9 834,679 - -0.8 834,757 + -1.2 834,757 + -0.8 834,757 + -1.3 834,758 - +0.0 834,831 + +1.3 834,831 + -1.3 834,831 + +0.2 834,831 + +0.7 834,831 + -0.9 834,831 + -0.2 834,832 - -0.0 834,832 - +0.4 834,832 - -1.9 834,832 - -2.0 834,832 - +0.1 834,840 - +0.3 834,902 + Sama_0676 0.18 -2.3 834,902 + Sama_0676 0.18 -1.6 834,902 + Sama_0676 0.18 +0.1 834,902 + Sama_0676 0.18 +1.1 834,902 + Sama_0676 0.18 -1.7 834,903 - Sama_0676 0.19 -0.7 834,903 - Sama_0676 0.19 -1.9 834,903 - Sama_0676 0.19 -0.2 834,950 + Sama_0676 0.33 +0.6 834,951 - Sama_0676 0.33 -1.7 834,969 + Sama_0676 0.38 -0.4 835,027 - Sama_0676 0.56 -1.0 835,040 + Sama_0676 0.60 +0.6 835,040 + Sama_0676 0.60 -0.7 835,040 + Sama_0676 0.60 -1.2 835,041 - Sama_0676 0.60 +0.8 835,065 + Sama_0676 0.67 -2.0 835,065 + Sama_0676 0.67 -0.2 835,066 - Sama_0676 0.67 -0.0 835,066 - Sama_0676 0.67 -0.6 835,087 + Sama_0676 0.74 +0.6 835,087 + Sama_0676 0.74 -0.1 835,087 + Sama_0676 0.74 +0.3 835,087 + Sama_0676 0.74 -1.3 835,088 - Sama_0676 0.74 -0.5 835,088 - Sama_0676 0.74 +1.3 835,088 - Sama_0676 0.74 +0.6 835,088 - Sama_0676 0.74 +0.5 835,088 - Sama_0676 0.74 +0.8 835,088 - Sama_0676 0.74 -0.9 835,088 - Sama_0676 0.74 +1.8 835,130 - Sama_0676 0.86 -0.2 835,146 + -1.1 835,147 - -1.2 835,147 - -0.3 835,147 - -0.3 835,165 + +0.1 835,198 + -0.7 835,198 + +0.1 835,199 - -0.2 835,199 - +1.3 835,226 + -0.1 835,226 + -0.8 835,226 + +0.1 835,226 + -0.1 835,226 + -1.2 835,226 + -1.3 835,227 - -1.2 835,227 - -0.0 835,227 - +0.2 835,227 - -0.4 835,228 + -1.0 835,228 + -0.2 835,228 + +0.2 835,293 + -0.2 835,294 - -1.6 835,294 - -0.9 835,314 + -1.3 835,314 + +1.7 835,369 - -0.9 835,371 + +1.1 835,371 + +0.6 835,372 - +0.0 835,447 + -2.4 835,447 + +0.3 835,447 + -0.6 835,447 + +0.3 835,447 + +1.6 835,448 - -1.4 835,448 - +3.1 835,451 + +2.1 835,451 + -0.2 835,451 + -0.3 835,451 + +0.0 835,451 + -0.0 835,451 + +0.3 835,452 - -1.6 835,452 - -1.3 835,452 - +0.8 835,452 - -1.0 835,452 - -2.0 835,534 + Sama_0677 0.13 +0.3 835,535 - Sama_0677 0.13 +0.1 835,618 + Sama_0677 0.17 -0.2 835,618 + Sama_0677 0.17 +1.6 835,618 + Sama_0677 0.17 +1.3 835,618 + Sama_0677 0.17 -0.4 835,619 - Sama_0677 0.17 +0.1 835,619 - Sama_0677 0.17 +1.3 835,619 - Sama_0677 0.17 +1.4 835,619 - Sama_0677 0.17 -1.4 835,619 - Sama_0677 0.17 -2.3 835,619 - Sama_0677 0.17 +1.6 835,619 - Sama_0677 0.17 -0.9 835,654 - Sama_0677 0.19 -1.9 835,654 - Sama_0677 0.19 +1.8 835,842 + Sama_0677 0.29 +2.7 835,843 - Sama_0677 0.29 -0.7 835,882 + Sama_0677 0.31 -0.8 835,882 + Sama_0677 0.31 +0.9 835,882 + Sama_0677 0.31 +1.3 835,882 + Sama_0677 0.31 +0.8 835,882 + Sama_0677 0.31 -0.6 835,882 + Sama_0677 0.31 +2.1 835,882 + Sama_0677 0.31 -0.4 835,882 + Sama_0677 0.31 +0.1 835,882 + Sama_0677 0.31 -0.8 835,882 + Sama_0677 0.31 -1.0 835,882 + Sama_0677 0.31 +1.4 835,882 + Sama_0677 0.31 +0.6 835,882 + Sama_0677 0.31 -1.2 835,883 - Sama_0677 0.31 -2.5 835,883 - Sama_0677 0.31 -0.4 835,883 - Sama_0677 0.31 -2.4 835,883 - Sama_0677 0.31 -1.0 835,883 - Sama_0677 0.31 -1.4 835,883 - Sama_0677 0.31 -0.9 835,885 - Sama_0677 0.31 +1.3 835,885 - Sama_0677 0.31 -3.0 835,897 + Sama_0677 0.32 -1.6 835,897 + Sama_0677 0.32 +1.8 835,898 - Sama_0677 0.32 -0.2 835,898 - Sama_0677 0.32 -1.1 835,899 + Sama_0677 0.32 -0.4 835,900 - Sama_0677 0.32 -0.2 835,947 + Sama_0677 0.34 +1.0 835,947 + Sama_0677 0.34 -1.2 835,947 + Sama_0677 0.34 -1.3 835,948 - Sama_0677 0.34 -0.2 835,965 + Sama_0677 0.35 -0.4 836,061 + Sama_0677 0.40 +0.6 836,105 - Sama_0677 0.43 +0.4 836,109 - Sama_0677 0.43 +0.6
Or see this region's nucleotide sequence