Strain Fitness in Shewanella amazonensis SB2B around Sama_0671

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0670 and Sama_0671 are separated by 62 nucleotidesSama_0671 and Sama_0672 are separated by 286 nucleotides Sama_0670: Sama_0670 - melanin biosynthesis protein TyrA, putative (RefSeq), at 826,433 to 827,368 _0670 Sama_0671: Sama_0671 - arginine repressor (RefSeq), at 827,431 to 827,895 _0671 Sama_0672: Sama_0672 - malate dehydrogenase (RefSeq), at 828,182 to 829,117 _0672 Position (kb) 827 828Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.432 kb on + strandat 826.432 kb on + strandat 826.432 kb on + strandat 826.433 kb on - strandat 826.438 kb on + strandat 826.447 kb on + strandat 826.470 kb on + strandat 826.471 kb on - strandat 826.568 kb on + strand, within Sama_0670at 826.569 kb on - strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.592 kb on + strand, within Sama_0670at 826.592 kb on + strand, within Sama_0670at 826.593 kb on - strand, within Sama_0670at 826.609 kb on + strand, within Sama_0670at 826.610 kb on - strand, within Sama_0670at 826.610 kb on - strand, within Sama_0670at 826.637 kb on + strand, within Sama_0670at 826.638 kb on - strand, within Sama_0670at 826.738 kb on - strand, within Sama_0670at 826.738 kb on - strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.771 kb on - strand, within Sama_0670at 826.771 kb on - strand, within Sama_0670at 826.852 kb on + strand, within Sama_0670at 826.852 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.977 kb on + strand, within Sama_0670at 826.994 kb on - strand, within Sama_0670at 827.058 kb on + strand, within Sama_0670at 827.058 kb on + strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.065 kb on + strand, within Sama_0670at 827.072 kb on + strand, within Sama_0670at 827.072 kb on + strand, within Sama_0670at 827.073 kb on - strand, within Sama_0670at 827.138 kb on - strand, within Sama_0670at 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.346 kb on - strandat 827.346 kb on - strandat 827.349 kb on + strandat 827.433 kb on - strandat 827.442 kb on - strandat 827.442 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.457 kb on + strandat 827.458 kb on - strandat 827.491 kb on - strand, within Sama_0671at 827.533 kb on - strand, within Sama_0671at 827.579 kb on - strand, within Sama_0671at 827.582 kb on - strand, within Sama_0671at 827.582 kb on - strand, within Sama_0671at 827.605 kb on - strand, within Sama_0671at 827.605 kb on - strand, within Sama_0671at 827.615 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.703 kb on - strand, within Sama_0671at 827.703 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.749 kb on - strand, within Sama_0671at 827.749 kb on - strand, within Sama_0671at 827.782 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.896 kb on - strandat 828.066 kb on + strandat 828.067 kb on - strandat 828.094 kb on + strandat 828.120 kb on + strandat 828.120 kb on + strandat 828.120 kb on + strandat 828.121 kb on - strandat 828.147 kb on - strandat 828.165 kb on + strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.234 kb on + strandat 828.235 kb on - strandat 828.235 kb on - strandat 828.278 kb on + strand, within Sama_0672at 828.278 kb on + strand, within Sama_0672at 828.433 kb on + strand, within Sama_0672at 828.433 kb on + strand, within Sama_0672at 828.440 kb on - strand, within Sama_0672at 828.469 kb on + strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.527 kb on - strand, within Sama_0672at 828.527 kb on - strand, within Sama_0672at 828.593 kb on + strand, within Sama_0672at 828.593 kb on + strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.664 kb on + strand, within Sama_0672at 828.665 kb on - strand, within Sama_0672at 828.665 kb on - strand, within Sama_0672at 828.678 kb on + strand, within Sama_0672at 828.678 kb on + strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.693 kb on + strand, within Sama_0672at 828.693 kb on + strand, within Sama_0672at 828.756 kb on + strand, within Sama_0672at 828.757 kb on - strand, within Sama_0672at 828.757 kb on - strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.860 kb on - strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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826,431 - -0.5
826,431 - -0.2
826,431 - -0.7
826,431 - -0.5
826,431 - -1.3
826,432 + -0.0
826,432 + -0.5
826,432 + +0.3
826,433 - -1.3
826,438 + +0.7
826,447 + +0.2
826,470 + -1.2
826,471 - +0.3
826,568 + Sama_0670 0.14 +1.6
826,569 - Sama_0670 0.15 +0.6
826,574 + Sama_0670 0.15 -0.9
826,574 + Sama_0670 0.15 -0.4
826,574 + Sama_0670 0.15 +0.3
826,592 + Sama_0670 0.17 +0.2
826,592 + Sama_0670 0.17 -0.7
826,593 - Sama_0670 0.17 -0.2
826,609 + Sama_0670 0.19 -0.8
826,610 - Sama_0670 0.19 +1.6
826,610 - Sama_0670 0.19 -0.3
826,637 + Sama_0670 0.22 +0.3
826,638 - Sama_0670 0.22 +0.6
826,738 - Sama_0670 0.33 +2.6
826,738 - Sama_0670 0.33 -0.3
826,770 + Sama_0670 0.36 +0.3
826,770 + Sama_0670 0.36 -1.1
826,770 + Sama_0670 0.36 -0.0
826,770 + Sama_0670 0.36 +0.2
826,770 + Sama_0670 0.36 +2.6
826,771 - Sama_0670 0.36 -0.3
826,771 - Sama_0670 0.36 -0.7
826,852 + Sama_0670 0.45 +1.4
826,852 + Sama_0670 0.45 +1.2
826,967 + Sama_0670 0.57 -1.1
826,967 + Sama_0670 0.57 +0.6
826,967 + Sama_0670 0.57 -0.4
826,968 - Sama_0670 0.57 +0.3
826,968 - Sama_0670 0.57 -0.7
826,968 - Sama_0670 0.57 -0.8
826,968 - Sama_0670 0.57 +0.6
826,968 - Sama_0670 0.57 -0.9
826,968 - Sama_0670 0.57 -1.2
826,968 - Sama_0670 0.57 -0.9
826,968 - Sama_0670 0.57 +1.6
826,977 + Sama_0670 0.58 -0.9
826,994 - Sama_0670 0.60 +0.8
827,058 + Sama_0670 0.67 +1.6
827,058 + Sama_0670 0.67 -0.2
827,059 - Sama_0670 0.67 +0.8
827,059 - Sama_0670 0.67 -0.3
827,059 - Sama_0670 0.67 +0.8
827,065 + Sama_0670 0.68 +0.3
827,072 + Sama_0670 0.68 -0.4
827,072 + Sama_0670 0.68 -0.8
827,073 - Sama_0670 0.68 -0.2
827,138 - Sama_0670 0.75 -0.3
827,345 + -0.2
827,345 + -0.0
827,345 + +1.0
827,345 + -0.4
827,346 - -0.0
827,346 - +0.5
827,349 + +0.2
827,433 - -0.2
827,442 - +1.6
827,442 - -1.4
827,446 - +1.2
827,446 - +1.9
827,446 - +1.3
827,446 - +0.6
827,457 + +0.2
827,458 - -1.7
827,491 - Sama_0671 0.13 -1.1
827,533 - Sama_0671 0.22 -1.1
827,579 - Sama_0671 0.32 -0.2
827,582 - Sama_0671 0.32 -1.8
827,582 - Sama_0671 0.32 -0.7
827,605 - Sama_0671 0.37 -1.2
827,605 - Sama_0671 0.37 +0.3
827,615 - Sama_0671 0.40 +1.6
827,629 - Sama_0671 0.43 +1.7
827,629 - Sama_0671 0.43 +0.6
827,629 - Sama_0671 0.43 -0.5
827,703 - Sama_0671 0.58 -0.0
827,703 - Sama_0671 0.58 +0.3
827,735 - Sama_0671 0.65 -0.0
827,735 - Sama_0671 0.65 -0.7
827,735 - Sama_0671 0.65 -0.5
827,735 - Sama_0671 0.65 +0.3
827,749 - Sama_0671 0.68 +0.8
827,749 - Sama_0671 0.68 -1.2
827,782 - Sama_0671 0.75 -1.6
827,812 - Sama_0671 0.82 +0.8
827,812 - Sama_0671 0.82 -0.5
827,812 - Sama_0671 0.82 -1.2
827,812 - Sama_0671 0.82 -1.0
827,896 - -0.7
828,066 + -0.5
828,067 - -0.3
828,094 + +0.2
828,120 + +2.4
828,120 + +1.2
828,120 + -0.3
828,121 - +5.4
828,147 - +5.6
828,165 + +1.0
828,166 - +5.8
828,166 - +5.8
828,166 - +5.9
828,166 - +6.8
828,167 + +3.0
828,167 + +3.7
828,167 + +3.9
828,167 + +2.9
828,167 + +3.2
828,168 - +5.5
828,168 - +5.7
828,168 - +6.0
828,168 - +5.8
828,168 - +5.3
828,168 - +5.3
828,177 + +5.3
828,177 + +5.5
828,177 + +5.6
828,177 + +5.2
828,177 + +4.6
828,178 - +5.8
828,178 - +5.4
828,178 - +6.0
828,178 - +5.5
828,178 - +5.7
828,178 - +5.6
828,178 - +5.7
828,178 - +4.4
828,178 - +5.8
828,234 + +5.2
828,235 - +6.2
828,235 - +5.7
828,278 + Sama_0672 0.10 +5.1
828,278 + Sama_0672 0.10 +5.0
828,433 + Sama_0672 0.27 +6.5
828,433 + Sama_0672 0.27 +6.6
828,440 - Sama_0672 0.28 +4.2
828,469 + Sama_0672 0.31 +4.8
828,470 - Sama_0672 0.31 +6.6
828,470 - Sama_0672 0.31 +5.8
828,470 - Sama_0672 0.31 +7.3
828,470 - Sama_0672 0.31 +6.6
828,527 - Sama_0672 0.37 +6.1
828,527 - Sama_0672 0.37 +5.3
828,593 + Sama_0672 0.44 +5.0
828,593 + Sama_0672 0.44 +5.8
828,594 - Sama_0672 0.44 +5.8
828,594 - Sama_0672 0.44 +6.4
828,594 - Sama_0672 0.44 +5.3
828,594 - Sama_0672 0.44 +5.8
828,594 - Sama_0672 0.44 +6.3
828,664 + Sama_0672 0.51 +6.0
828,665 - Sama_0672 0.52 +6.0
828,665 - Sama_0672 0.52 +6.5
828,678 + Sama_0672 0.53 +6.3
828,678 + Sama_0672 0.53 +5.5
828,679 - Sama_0672 0.53 +4.9
828,679 - Sama_0672 0.53 +6.4
828,679 - Sama_0672 0.53 +4.8
828,693 + Sama_0672 0.55 +6.4
828,693 + Sama_0672 0.55 +5.7
828,756 + Sama_0672 0.61 +6.7
828,757 - Sama_0672 0.61 +6.4
828,757 - Sama_0672 0.61 +6.3
828,859 + Sama_0672 0.72 +6.4
828,859 + Sama_0672 0.72 +5.9
828,859 + Sama_0672 0.72 +6.1
828,859 + Sama_0672 0.72 +6.0
828,860 - Sama_0672 0.72 +6.2
828,886 + Sama_0672 0.75 +5.9
828,886 + Sama_0672 0.75 +5.5
828,886 + Sama_0672 0.75 +6.1
828,886 + Sama_0672 0.75 +6.1

Or see this region's nucleotide sequence