Strain Fitness in Shewanella amazonensis SB2B around Sama_0599

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0597 and Sama_0598 are separated by 217 nucleotidesSama_0598 and Sama_0599 are separated by 122 nucleotidesSama_0599 and Sama_0600 are separated by 137 nucleotides Sama_0597: Sama_0597 - hypothetical protein (RefSeq), at 747,954 to 748,385 _0597 Sama_0598: Sama_0598 - inorganic pyrophosphatase (RefSeq), at 748,603 to 749,136 _0598 Sama_0599: Sama_0599 - fructose-1,6-bisphosphatase (RefSeq), at 749,259 to 750,221 _0599 Sama_0600: Sama_0600 - dipeptidyl peptidase IV (RefSeq), at 750,359 to 752,665 _0600 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 748.260 kb on + strand, within Sama_0597at 748.261 kb on - strand, within Sama_0597at 748.263 kb on - strand, within Sama_0597at 748.263 kb on - strand, within Sama_0597at 748.304 kb on + strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.307 kb on + strand, within Sama_0597at 748.308 kb on - strand, within Sama_0597at 748.344 kb on + strandat 748.344 kb on + strandat 748.345 kb on - strandat 748.381 kb on + strandat 748.382 kb on - strandat 748.382 kb on - strandat 748.389 kb on + strandat 748.502 kb on + strandat 748.502 kb on + strandat 748.543 kb on + strandat 748.604 kb on + strandat 748.605 kb on - strandat 748.605 kb on - strandat 749.191 kb on - strandat 749.194 kb on - strandat 749.194 kb on - strandat 749.194 kb on - strandat 749.194 kb on - strandat 749.194 kb on - strandat 749.194 kb on - strandat 749.196 kb on - strandat 749.248 kb on + strandat 749.248 kb on + strandat 749.680 kb on - strand, within Sama_0599at 750.197 kb on + strandat 750.266 kb on - strandat 750.328 kb on + strandat 750.328 kb on + strandat 750.329 kb on - strandat 750.329 kb on - strandat 750.329 kb on - strandat 750.329 kb on - strandat 750.369 kb on + strandat 750.369 kb on + strandat 750.369 kb on + strandat 750.370 kb on - strandat 750.373 kb on + strandat 750.374 kb on - strandat 750.374 kb on - strandat 750.384 kb on + strandat 750.384 kb on + strandat 750.398 kb on + strandat 750.398 kb on + strandat 750.398 kb on + strandat 750.398 kb on + strandat 750.398 kb on + strandat 750.399 kb on - strandat 750.399 kb on - strandat 750.456 kb on + strandat 750.456 kb on + strandat 750.457 kb on - strandat 750.481 kb on + strandat 750.482 kb on - strandat 750.482 kb on - strandat 750.542 kb on + strandat 750.542 kb on + strandat 750.542 kb on + strandat 750.542 kb on + strandat 750.542 kb on + strandat 750.542 kb on + strandat 750.543 kb on - strandat 750.648 kb on - strand, within Sama_0600at 750.648 kb on - strand, within Sama_0600at 750.684 kb on + strand, within Sama_0600at 750.684 kb on + strand, within Sama_0600at 750.684 kb on + strand, within Sama_0600at 750.684 kb on + strand, within Sama_0600at 750.685 kb on - strand, within Sama_0600at 750.685 kb on - strand, within Sama_0600at 750.685 kb on - strand, within Sama_0600at 750.685 kb on - strand, within Sama_0600at 750.685 kb on - strand, within Sama_0600at 750.768 kb on - strand, within Sama_0600at 750.780 kb on + strand, within Sama_0600at 750.780 kb on + strand, within Sama_0600at 750.780 kb on + strand, within Sama_0600at 750.781 kb on - strand, within Sama_0600at 750.781 kb on - strand, within Sama_0600at 750.781 kb on - strand, within Sama_0600at 750.781 kb on - strand, within Sama_0600at 750.781 kb on - strand, within Sama_0600at 750.788 kb on + strand, within Sama_0600at 750.789 kb on - strand, within Sama_0600at 750.816 kb on + strand, within Sama_0600at 750.816 kb on + strand, within Sama_0600at 750.816 kb on + strand, within Sama_0600at 750.817 kb on - strand, within Sama_0600at 750.817 kb on - strand, within Sama_0600at 750.820 kb on + strand, within Sama_0600at 750.821 kb on - strand, within Sama_0600at 750.842 kb on + strand, within Sama_0600at 750.842 kb on + strand, within Sama_0600at 750.842 kb on + strand, within Sama_0600at 750.843 kb on - strand, within Sama_0600at 750.845 kb on + strand, within Sama_0600at 750.845 kb on + strand, within Sama_0600at 750.845 kb on + strand, within Sama_0600at 750.846 kb on - strand, within Sama_0600at 750.846 kb on - strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.932 kb on + strand, within Sama_0600at 750.933 kb on - strand, within Sama_0600at 750.933 kb on - strand, within Sama_0600at 750.933 kb on - strand, within Sama_0600at 750.944 kb on - strand, within Sama_0600at 750.947 kb on - strand, within Sama_0600at 750.962 kb on + strand, within Sama_0600at 750.969 kb on - strand, within Sama_0600at 751.025 kb on - strand, within Sama_0600at 751.080 kb on - strand, within Sama_0600at 751.115 kb on - strand, within Sama_0600at 751.163 kb on + strand, within Sama_0600at 751.163 kb on + strand, within Sama_0600at 751.177 kb on + strand, within Sama_0600at 751.177 kb on + strand, within Sama_0600at 751.177 kb on + strand, within Sama_0600at 751.177 kb on + strand, within Sama_0600at 751.178 kb on - strand, within Sama_0600at 751.178 kb on - strand, within Sama_0600at 751.178 kb on - strand, within Sama_0600at 751.178 kb on - strand, within Sama_0600at 751.184 kb on - strand, within Sama_0600at 751.184 kb on - strand, within Sama_0600

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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748,260 + Sama_0597 0.71 +1.2
748,261 - Sama_0597 0.71 -1.2
748,263 - Sama_0597 0.72 +1.2
748,263 - Sama_0597 0.72 -0.2
748,304 + Sama_0597 0.81 -0.2
748,305 - Sama_0597 0.81 -0.9
748,305 - Sama_0597 0.81 -0.4
748,305 - Sama_0597 0.81 +0.4
748,305 - Sama_0597 0.81 -1.8
748,305 - Sama_0597 0.81 +0.0
748,307 + Sama_0597 0.82 -1.7
748,308 - Sama_0597 0.82 -0.5
748,344 + +0.2
748,344 + -1.3
748,345 - -0.6
748,381 + +0.6
748,382 - -0.5
748,382 - +2.2
748,389 + +0.9
748,502 + -0.5
748,502 + -0.5
748,543 + -1.3
748,604 + -0.3
748,605 - -1.6
748,605 - -0.8
749,191 - +1.9
749,194 - +2.2
749,194 - +0.2
749,194 - +1.9
749,194 - -1.0
749,194 - +0.7
749,194 - -1.1
749,196 - +0.0
749,248 + +0.2
749,248 + +0.8
749,680 - Sama_0599 0.44 +1.2
750,197 + -0.1
750,266 - -0.2
750,328 + -0.1
750,328 + -0.9
750,329 - -0.1
750,329 - -0.5
750,329 - +3.2
750,329 - -2.1
750,369 + -0.4
750,369 + -1.4
750,369 + -0.1
750,370 - -0.6
750,373 + +1.6
750,374 - -2.0
750,374 - -1.1
750,384 + -0.4
750,384 + -1.3
750,398 + +0.6
750,398 + +0.7
750,398 + -1.0
750,398 + +2.8
750,398 + +1.2
750,399 - -2.0
750,399 - +0.0
750,456 + +0.0
750,456 + +0.0
750,457 - +0.6
750,481 + -0.5
750,482 - +0.3
750,482 - -0.3
750,542 + +1.2
750,542 + -0.9
750,542 + +1.2
750,542 + +0.6
750,542 + -0.2
750,542 + -1.2
750,543 - -1.0
750,648 - Sama_0600 0.13 +1.4
750,648 - Sama_0600 0.13 -1.1
750,684 + Sama_0600 0.14 -0.7
750,684 + Sama_0600 0.14 +0.4
750,684 + Sama_0600 0.14 +0.1
750,684 + Sama_0600 0.14 -0.6
750,685 - Sama_0600 0.14 +0.0
750,685 - Sama_0600 0.14 -1.1
750,685 - Sama_0600 0.14 -0.1
750,685 - Sama_0600 0.14 -1.1
750,685 - Sama_0600 0.14 -0.4
750,768 - Sama_0600 0.18 +0.4
750,780 + Sama_0600 0.18 -0.3
750,780 + Sama_0600 0.18 -2.2
750,780 + Sama_0600 0.18 +1.2
750,781 - Sama_0600 0.18 -0.5
750,781 - Sama_0600 0.18 -0.9
750,781 - Sama_0600 0.18 +0.5
750,781 - Sama_0600 0.18 -0.5
750,781 - Sama_0600 0.18 -0.3
750,788 + Sama_0600 0.19 -0.6
750,789 - Sama_0600 0.19 -0.3
750,816 + Sama_0600 0.20 +1.2
750,816 + Sama_0600 0.20 +1.3
750,816 + Sama_0600 0.20 +0.4
750,817 - Sama_0600 0.20 +1.3
750,817 - Sama_0600 0.20 +0.4
750,820 + Sama_0600 0.20 +1.8
750,821 - Sama_0600 0.20 -0.8
750,842 + Sama_0600 0.21 +0.0
750,842 + Sama_0600 0.21 +1.2
750,842 + Sama_0600 0.21 -1.7
750,843 - Sama_0600 0.21 +0.2
750,845 + Sama_0600 0.21 -2.0
750,845 + Sama_0600 0.21 +0.5
750,845 + Sama_0600 0.21 +0.6
750,846 - Sama_0600 0.21 -0.9
750,846 - Sama_0600 0.21 -1.4
750,932 + Sama_0600 0.25 +0.1
750,932 + Sama_0600 0.25 -0.6
750,932 + Sama_0600 0.25 -2.6
750,932 + Sama_0600 0.25 +0.9
750,932 + Sama_0600 0.25 -1.8
750,932 + Sama_0600 0.25 +0.0
750,932 + Sama_0600 0.25 +0.0
750,933 - Sama_0600 0.25 +0.4
750,933 - Sama_0600 0.25 -0.3
750,933 - Sama_0600 0.25 +0.3
750,944 - Sama_0600 0.25 -0.3
750,947 - Sama_0600 0.25 -0.7
750,962 + Sama_0600 0.26 -0.7
750,969 - Sama_0600 0.26 -1.1
751,025 - Sama_0600 0.29 +0.7
751,080 - Sama_0600 0.31 +0.7
751,115 - Sama_0600 0.33 -0.3
751,163 + Sama_0600 0.35 +0.4
751,163 + Sama_0600 0.35 -0.6
751,177 + Sama_0600 0.35 -1.5
751,177 + Sama_0600 0.35 -0.6
751,177 + Sama_0600 0.35 -2.0
751,177 + Sama_0600 0.35 -0.8
751,178 - Sama_0600 0.36 -1.3
751,178 - Sama_0600 0.36 +0.6
751,178 - Sama_0600 0.36 +1.1
751,178 - Sama_0600 0.36 -0.6
751,184 - Sama_0600 0.36 -0.5
751,184 - Sama_0600 0.36 +1.7

Or see this region's nucleotide sequence