Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0512 and Sama_0513 are separated by 202 nucleotides Sama_0513 and Sama_0514 are separated by 11 nucleotides
Sama_0512: Sama_0512 - ATP-dependent RNA helicase DeaD (RefSeq), at 628,459 to 630,372
_0512
Sama_0513: Sama_0513 - peptidase M28 (RefSeq), at 630,575 to 631,600
_0513
Sama_0514: Sama_0514 - excinuclease ABC, A subunit (RefSeq), at 631,612 to 634,440
_0514
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 629.613 kb on + strand, within Sama_0512 at 629.631 kb on + strand, within Sama_0512 at 629.663 kb on - strand, within Sama_0512 at 629.989 kb on + strand, within Sama_0512 at 629.990 kb on - strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.044 kb on + strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.048 kb on + strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.055 kb on + strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.109 kb on + strand, within Sama_0512 at 630.214 kb on - strand at 630.385 kb on - strand at 630.416 kb on + strand at 630.614 kb on + strand at 630.614 kb on + strand at 630.615 kb on - strand at 630.621 kb on + strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.623 kb on + strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.674 kb on - strand at 630.691 kb on - strand, within Sama_0513 at 630.691 kb on - strand, within Sama_0513 at 630.717 kb on + strand, within Sama_0513 at 630.739 kb on + strand, within Sama_0513 at 630.751 kb on - strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.898 kb on - strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.907 kb on - strand, within Sama_0513 at 630.932 kb on - strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.171 kb on - strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513 at 631.613 kb on + strand at 631.614 kb on - strand at 631.633 kb on + strand at 631.669 kb on + strand at 631.786 kb on + strand at 631.786 kb on + strand at 631.786 kb on + strand at 631.786 kb on + strand at 631.786 kb on + strand at 631.787 kb on - strand at 631.787 kb on - strand at 631.787 kb on - strand at 631.787 kb on - strand at 631.787 kb on - strand at 631.787 kb on - strand at 631.819 kb on + strand at 631.819 kb on + strand at 631.819 kb on + strand at 631.819 kb on + strand at 631.820 kb on - strand at 631.820 kb on - strand at 631.840 kb on - strand at 631.840 kb on - strand at 631.878 kb on + strand at 631.879 kb on - strand at 631.879 kb on - strand at 631.879 kb on - strand at 631.879 kb on - strand at 631.879 kb on - strand at 631.880 kb on + strand at 631.880 kb on + strand at 631.880 kb on + strand at 631.880 kb on + strand at 631.881 kb on - strand at 631.881 kb on - strand at 631.881 kb on - strand at 631.881 kb on - strand at 631.881 kb on - strand at 631.927 kb on + strand, within Sama_0514 at 631.982 kb on + strand, within Sama_0514 at 631.982 kb on + strand, within Sama_0514 at 631.982 kb on + strand, within Sama_0514 at 631.982 kb on + strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 631.983 kb on - strand, within Sama_0514 at 632.102 kb on + strand, within Sama_0514 at 632.102 kb on + strand, within Sama_0514 at 632.103 kb on - strand, within Sama_0514 at 632.103 kb on - strand, within Sama_0514 at 632.103 kb on - strand, within Sama_0514 at 632.129 kb on + strand, within Sama_0514 at 632.130 kb on - strand, within Sama_0514 at 632.130 kb on - strand, within Sama_0514 at 632.130 kb on - strand, within Sama_0514 at 632.142 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.162 kb on + strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.163 kb on - strand, within Sama_0514 at 632.188 kb on + strand, within Sama_0514 at 632.188 kb on + strand, within Sama_0514 at 632.188 kb on + strand, within Sama_0514 at 632.189 kb on - strand, within Sama_0514 at 632.189 kb on - strand, within Sama_0514 at 632.189 kb on - strand, within Sama_0514 at 632.189 kb on - strand, within Sama_0514 at 632.196 kb on + strand, within Sama_0514 at 632.196 kb on + strand, within Sama_0514 at 632.196 kb on + strand, within Sama_0514 at 632.196 kb on + strand, within Sama_0514 at 632.196 kb on + strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.197 kb on - strand, within Sama_0514 at 632.242 kb on - strand, within Sama_0514 at 632.330 kb on + strand, within Sama_0514 at 632.330 kb on + strand, within Sama_0514 at 632.330 kb on + strand, within Sama_0514 at 632.331 kb on - strand, within Sama_0514 at 632.331 kb on - strand, within Sama_0514 at 632.331 kb on - strand, within Sama_0514 at 632.331 kb on - strand, within Sama_0514 at 632.334 kb on + strand, within Sama_0514 at 632.334 kb on + strand, within Sama_0514 at 632.334 kb on + strand, within Sama_0514 at 632.335 kb on - strand, within Sama_0514 at 632.423 kb on + strand, within Sama_0514 at 632.423 kb on + strand, within Sama_0514 at 632.423 kb on + strand, within Sama_0514 at 632.423 kb on + strand, within Sama_0514 at 632.423 kb on + strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.424 kb on - strand, within Sama_0514 at 632.535 kb on + strand, within Sama_0514 at 632.535 kb on + strand, within Sama_0514 at 632.535 kb on + strand, within Sama_0514 at 632.539 kb on + strand, within Sama_0514 at 632.539 kb on + strand, within Sama_0514 at 632.539 kb on + strand, within Sama_0514 at 632.539 kb on + strand, within Sama_0514 at 632.540 kb on - strand, within Sama_0514 at 632.578 kb on - strand, within Sama_0514 at 632.578 kb on - strand, within Sama_0514 at 632.580 kb on + strand, within Sama_0514 at 632.580 kb on + strand, within Sama_0514 at 632.580 kb on + strand, within Sama_0514 at 632.580 kb on + strand, within Sama_0514 at 632.580 kb on + strand, within Sama_0514 at 632.581 kb on - strand, within Sama_0514
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 629,613 + Sama_0512 0.60 -0.6 629,631 + Sama_0512 0.61 +0.5 629,663 - Sama_0512 0.63 -1.1 629,989 + Sama_0512 0.80 +0.1 629,990 - Sama_0512 0.80 +1.2 630,026 + Sama_0512 0.82 +0.3 630,026 + Sama_0512 0.82 +0.5 630,026 + Sama_0512 0.82 +0.8 630,027 - Sama_0512 0.82 -1.0 630,027 - Sama_0512 0.82 +1.5 630,044 + Sama_0512 0.83 +0.1 630,045 - Sama_0512 0.83 -0.3 630,045 - Sama_0512 0.83 +0.8 630,045 - Sama_0512 0.83 -0.5 630,045 - Sama_0512 0.83 -0.8 630,048 + Sama_0512 0.83 +1.1 630,049 - Sama_0512 0.83 -0.6 630,049 - Sama_0512 0.83 -0.5 630,055 + Sama_0512 0.83 +0.5 630,056 - Sama_0512 0.83 -0.5 630,056 - Sama_0512 0.83 +1.4 630,109 + Sama_0512 0.86 -0.0 630,214 - +0.1 630,385 - -1.0 630,416 + -0.5 630,614 + -1.9 630,614 + +1.1 630,615 - +1.5 630,621 + -0.3 630,622 - +0.3 630,622 - -0.2 630,622 - +0.2 630,623 + -0.5 630,633 - -2.1 630,633 - -0.3 630,633 - +1.5 630,633 - -0.1 630,633 - -0.8 630,674 - -0.8 630,691 - Sama_0513 0.11 -1.2 630,691 - Sama_0513 0.11 -0.5 630,717 + Sama_0513 0.14 -1.3 630,739 + Sama_0513 0.16 -0.7 630,751 - Sama_0513 0.17 -0.0 630,771 + Sama_0513 0.19 -1.3 630,771 + Sama_0513 0.19 -1.5 630,772 - Sama_0513 0.19 +1.3 630,772 - Sama_0513 0.19 -0.5 630,772 - Sama_0513 0.19 -0.5 630,897 + Sama_0513 0.31 -0.2 630,897 + Sama_0513 0.31 -1.0 630,897 + Sama_0513 0.31 -1.6 630,897 + Sama_0513 0.31 -1.7 630,897 + Sama_0513 0.31 -1.6 630,897 + Sama_0513 0.31 -2.1 630,898 - Sama_0513 0.31 +0.3 630,906 + Sama_0513 0.32 -1.7 630,906 + Sama_0513 0.32 -0.2 630,907 - Sama_0513 0.32 +1.4 630,932 - Sama_0513 0.35 -0.0 630,959 + Sama_0513 0.37 -1.7 630,959 + Sama_0513 0.37 -1.6 630,960 - Sama_0513 0.38 +0.1 630,960 - Sama_0513 0.38 +0.9 630,960 - Sama_0513 0.38 +0.8 630,960 - Sama_0513 0.38 -1.9 630,960 - Sama_0513 0.38 +0.0 631,003 - Sama_0513 0.42 -1.3 631,003 - Sama_0513 0.42 -0.8 631,171 - Sama_0513 0.58 -1.8 631,181 + Sama_0513 0.59 -0.6 631,181 + Sama_0513 0.59 -0.5 631,181 + Sama_0513 0.59 +0.1 631,181 + Sama_0513 0.59 -2.4 631,182 - Sama_0513 0.59 +0.7 631,182 - Sama_0513 0.59 -0.8 631,226 + Sama_0513 0.63 -0.2 631,226 + Sama_0513 0.63 -0.5 631,226 + Sama_0513 0.63 -0.5 631,226 + Sama_0513 0.63 +0.8 631,226 + Sama_0513 0.63 -1.6 631,226 + Sama_0513 0.63 -0.8 631,226 + Sama_0513 0.63 -1.9 631,226 + Sama_0513 0.63 +1.1 631,227 - Sama_0513 0.64 -1.0 631,227 - Sama_0513 0.64 -0.9 631,613 + -1.3 631,614 - +1.0 631,633 + -1.9 631,669 + +0.1 631,786 + -0.5 631,786 + +1.1 631,786 + +1.8 631,786 + -0.6 631,786 + -1.1 631,787 - +0.5 631,787 - -0.7 631,787 - -1.4 631,787 - -0.3 631,787 - -0.3 631,787 - -0.5 631,819 + +0.5 631,819 + -0.2 631,819 + -0.2 631,819 + -1.1 631,820 - -1.2 631,820 - +1.1 631,840 - -0.6 631,840 - +0.8 631,878 + -0.5 631,879 - -0.7 631,879 - -1.1 631,879 - -0.5 631,879 - -0.2 631,879 - -1.7 631,880 + +0.1 631,880 + -1.6 631,880 + -0.5 631,880 + -0.6 631,881 - -1.6 631,881 - +0.1 631,881 - +1.3 631,881 - -0.3 631,881 - +0.1 631,927 + Sama_0514 0.11 +0.2 631,982 + Sama_0514 0.13 -0.8 631,982 + Sama_0514 0.13 -1.6 631,982 + Sama_0514 0.13 +0.0 631,982 + Sama_0514 0.13 +0.1 631,983 - Sama_0514 0.13 -0.0 631,983 - Sama_0514 0.13 +1.0 631,983 - Sama_0514 0.13 -1.1 631,983 - Sama_0514 0.13 -1.5 631,983 - Sama_0514 0.13 +0.2 631,983 - Sama_0514 0.13 +4.1 632,102 + Sama_0514 0.17 +2.1 632,102 + Sama_0514 0.17 +0.5 632,103 - Sama_0514 0.17 +0.3 632,103 - Sama_0514 0.17 +1.1 632,103 - Sama_0514 0.17 -0.6 632,129 + Sama_0514 0.18 +0.1 632,130 - Sama_0514 0.18 -0.6 632,130 - Sama_0514 0.18 -2.5 632,130 - Sama_0514 0.18 -0.8 632,142 + Sama_0514 0.19 -1.4 632,162 + Sama_0514 0.19 -1.3 632,162 + Sama_0514 0.19 +0.3 632,162 + Sama_0514 0.19 -1.2 632,162 + Sama_0514 0.19 +0.1 632,162 + Sama_0514 0.19 +0.3 632,162 + Sama_0514 0.19 -1.2 632,162 + Sama_0514 0.19 -2.2 632,162 + Sama_0514 0.19 -1.5 632,162 + Sama_0514 0.19 +0.4 632,162 + Sama_0514 0.19 +0.4 632,162 + Sama_0514 0.19 -0.0 632,162 + Sama_0514 0.19 +1.1 632,162 + Sama_0514 0.19 +0.5 632,162 + Sama_0514 0.19 -0.5 632,162 + Sama_0514 0.19 -0.2 632,163 - Sama_0514 0.19 +1.3 632,163 - Sama_0514 0.19 -1.9 632,163 - Sama_0514 0.19 +0.9 632,163 - Sama_0514 0.19 -0.8 632,163 - Sama_0514 0.19 -1.5 632,163 - Sama_0514 0.19 +0.1 632,163 - Sama_0514 0.19 -0.2 632,163 - Sama_0514 0.19 +0.3 632,163 - Sama_0514 0.19 -1.6 632,163 - Sama_0514 0.19 +0.1 632,163 - Sama_0514 0.19 -0.5 632,163 - Sama_0514 0.19 +0.0 632,163 - Sama_0514 0.19 +0.8 632,163 - Sama_0514 0.19 -0.0 632,163 - Sama_0514 0.19 -0.6 632,163 - Sama_0514 0.19 -0.7 632,163 - Sama_0514 0.19 -0.0 632,188 + Sama_0514 0.20 +1.7 632,188 + Sama_0514 0.20 -1.3 632,188 + Sama_0514 0.20 +0.1 632,189 - Sama_0514 0.20 +0.9 632,189 - Sama_0514 0.20 -0.7 632,189 - Sama_0514 0.20 -0.6 632,189 - Sama_0514 0.20 -0.1 632,196 + Sama_0514 0.21 +0.9 632,196 + Sama_0514 0.21 -1.0 632,196 + Sama_0514 0.21 +0.8 632,196 + Sama_0514 0.21 -0.2 632,196 + Sama_0514 0.21 -0.2 632,197 - Sama_0514 0.21 +0.1 632,197 - Sama_0514 0.21 -0.8 632,197 - Sama_0514 0.21 -0.3 632,197 - Sama_0514 0.21 -0.7 632,197 - Sama_0514 0.21 -1.3 632,197 - Sama_0514 0.21 -0.7 632,197 - Sama_0514 0.21 +1.2 632,242 - Sama_0514 0.22 -1.6 632,330 + Sama_0514 0.25 +3.1 632,330 + Sama_0514 0.25 -0.2 632,330 + Sama_0514 0.25 -0.8 632,331 - Sama_0514 0.25 -0.3 632,331 - Sama_0514 0.25 -1.4 632,331 - Sama_0514 0.25 +1.8 632,331 - Sama_0514 0.25 -2.5 632,334 + Sama_0514 0.26 +1.0 632,334 + Sama_0514 0.26 +1.5 632,334 + Sama_0514 0.26 -1.6 632,335 - Sama_0514 0.26 -1.9 632,423 + Sama_0514 0.29 +0.3 632,423 + Sama_0514 0.29 -1.6 632,423 + Sama_0514 0.29 +0.3 632,423 + Sama_0514 0.29 +0.5 632,423 + Sama_0514 0.29 -0.6 632,424 - Sama_0514 0.29 +0.8 632,424 - Sama_0514 0.29 +0.8 632,424 - Sama_0514 0.29 -0.3 632,424 - Sama_0514 0.29 +0.4 632,424 - Sama_0514 0.29 +0.5 632,424 - Sama_0514 0.29 +2.5 632,424 - Sama_0514 0.29 +3.1 632,424 - Sama_0514 0.29 -0.5 632,535 + Sama_0514 0.33 -0.1 632,535 + Sama_0514 0.33 +1.1 632,535 + Sama_0514 0.33 +0.8 632,539 + Sama_0514 0.33 -0.0 632,539 + Sama_0514 0.33 +0.1 632,539 + Sama_0514 0.33 -0.3 632,539 + Sama_0514 0.33 +0.4 632,540 - Sama_0514 0.33 -1.3 632,578 - Sama_0514 0.34 -1.2 632,578 - Sama_0514 0.34 +0.1 632,580 + Sama_0514 0.34 +0.5 632,580 + Sama_0514 0.34 -0.4 632,580 + Sama_0514 0.34 -2.0 632,580 + Sama_0514 0.34 -0.9 632,580 + Sama_0514 0.34 -0.0 632,581 - Sama_0514 0.34 +1.5
Or see this region's nucleotide sequence